Wall clock time and date at job start Sat Apr 11 2020 00:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42897 * 109.46818 * 2 1 4 4 C 1.35955 * 116.99993 * 179.97438 * 3 2 1 5 5 C 1.38657 * 120.06324 * 0.02562 * 4 3 2 6 6 C 1.38183 * 119.97055 * 180.02562 * 5 4 3 7 7 C 1.38266 * 120.09350 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.93392 * 179.97438 * 7 6 5 9 9 N 1.46906 * 109.46817 * 83.40847 * 8 7 6 10 10 C 1.46900 * 110.99624 * 192.26631 * 9 8 7 11 11 C 1.50705 * 109.46980 * 178.14381 * 10 9 8 12 12 H 1.07997 * 120.00037 * 5.08168 * 11 10 9 13 13 C 1.37879 * 119.99970 * 185.08246 * 11 10 9 14 14 N 1.31509 * 120.00001 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99627 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47480 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47064 * 120.00282 * 15 13 11 18 18 H 1.48501 * 109.47098 * 239.99789 * 15 13 11 19 19 C 1.46894 * 111.00053 * 68.31200 * 9 8 7 20 20 C 1.54263 * 110.03059 * 218.66146 * 19 9 8 21 21 C 1.54970 * 104.16110 * 217.13375 * 20 19 9 22 22 C 1.54890 * 102.77468 * 37.89013 * 21 20 19 23 23 C 1.53873 * 110.03638 * 101.44468 * 19 9 8 24 24 C 1.38254 * 120.12525 * 0.25555 * 7 6 5 25 25 C 1.38330 * 120.03314 * 359.48610 * 24 7 6 26 26 F 1.35096 * 120.05253 * 180.23845 * 25 24 7 27 27 H 1.08998 * 109.47355 * 299.99114 * 1 2 3 28 28 H 1.09000 * 109.47160 * 60.00126 * 1 2 3 29 29 H 1.09008 * 109.46853 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46884 * 240.00665 * 2 1 3 31 31 H 1.08994 * 109.47446 * 120.00151 * 2 1 3 32 32 H 1.07998 * 120.01368 * 0.02562 * 5 4 3 33 33 H 1.08000 * 119.95454 * 179.97438 * 6 5 4 34 34 H 1.09004 * 109.47360 * 323.40998 * 8 7 6 35 35 H 1.08997 * 109.47006 * 203.40228 * 8 7 6 36 36 H 1.08998 * 109.47401 * 298.14077 * 10 9 8 37 37 H 1.08997 * 109.47768 * 58.14450 * 10 9 8 38 38 H 0.96999 * 119.99740 * 180.02562 * 14 13 11 39 39 H 1.09004 * 110.01933 * 340.05423 * 19 9 8 40 40 H 1.08997 * 110.48959 * 335.78294 * 20 19 9 41 41 H 1.09006 * 110.48732 * 98.42920 * 20 19 9 42 42 H 1.09000 * 110.72290 * 279.58098 * 21 20 19 43 43 H 1.08997 * 110.92301 * 156.29179 * 21 20 19 44 44 H 1.09004 * 110.48986 * 203.40560 * 22 21 20 45 45 H 1.09001 * 110.60444 * 80.81385 * 22 21 20 46 46 H 1.09003 * 110.03416 * 238.57409 * 23 19 9 47 47 H 1.09004 * 110.02828 * 359.97438 * 23 19 9 48 48 H 1.08005 * 119.98316 * 179.74457 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3541 1.5255 0.0005 5 6 4.2000 0.4268 0.0005 6 6 5.5696 0.6102 0.0016 7 6 6.0980 1.8879 0.0033 8 6 7.5922 2.0837 0.0050 9 7 8.0998 1.9908 -1.3704 10 6 9.5649 1.8851 -1.3848 11 6 10.0446 1.7461 -2.8067 12 1 9.3417 1.8195 -3.6233 13 6 11.3809 1.5253 -3.0650 14 7 12.2368 1.4355 -2.0705 15 14 11.9753 1.3524 -4.8274 16 1 10.8234 1.4912 -5.7543 17 1 12.9749 2.4113 -5.1189 18 1 12.6004 0.0178 -5.0103 19 6 7.6463 3.1316 -2.1771 20 6 7.2973 2.6636 -3.6050 21 6 7.7716 3.8272 -4.5119 22 6 9.0816 4.2855 -3.8241 23 6 8.7800 4.1627 -2.3162 24 6 5.2582 2.9861 0.0091 25 6 3.8863 2.8086 0.0027 26 9 3.0654 3.8815 0.0036 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.7886 -0.5717 -0.0003 33 1 6.2282 -0.2457 0.0020 34 1 8.0591 1.3122 0.6175 35 1 7.8295 3.0656 0.4143 36 1 9.9983 2.7815 -0.9412 37 1 9.8719 1.0109 -0.8108 38 1 13.1769 1.2806 -2.2523 39 1 6.7756 3.5944 -1.7125 40 1 7.8349 1.7471 -3.8482 41 1 6.2222 2.5145 -3.7055 42 1 7.0377 4.6331 -4.5208 43 1 7.9696 3.4757 -5.5245 44 1 9.3080 5.3194 -4.0848 45 1 9.9093 3.6330 -4.1019 46 1 8.4592 5.1261 -1.9198 47 1 9.6666 3.8168 -1.7847 48 1 5.6735 3.9831 0.0146 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237957351.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:38:45 Heat of formation + Delta-G solvation = -41.415553 kcal Electronic energy + Delta-G solvation = -28080.016618 eV Core-core repulsion = 24243.217722 eV Total energy + Delta-G solvation = -3836.798895 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.185 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -48.66619 -40.12089 -38.95413 -37.51868 -34.30269 -32.73557 -32.03766 -30.71356 -30.03430 -28.03894 -27.12973 -26.71045 -24.44277 -23.81773 -22.10422 -22.00560 -21.00359 -19.88599 -18.51638 -18.06702 -16.88197 -16.67497 -16.45168 -16.34308 -15.35597 -15.16221 -15.06085 -14.82750 -14.39240 -14.19062 -13.90343 -13.77669 -13.25398 -13.15776 -12.99674 -12.85743 -12.53875 -12.21478 -11.95505 -11.84433 -11.79786 -11.34357 -11.18507 -11.02556 -10.96313 -10.83235 -10.69838 -10.58613 -10.44198 -10.25415 -10.12129 -9.96506 -9.48703 -9.24758 -8.84214 -8.73976 -8.37663 -8.02116 -7.17274 -6.03493 -4.00058 1.22777 1.33642 2.96993 3.28533 3.37812 3.40676 3.64159 4.27337 4.42082 4.63078 4.66008 4.78050 4.96050 4.97208 5.05243 5.14791 5.27421 5.32186 5.37196 5.47653 5.50811 5.52025 5.59944 5.74654 5.77264 5.85551 5.98422 6.09554 6.13268 6.21393 6.25508 6.31452 6.38598 6.44581 6.57494 6.66859 6.71208 6.73435 6.74699 6.85551 6.98449 7.02930 7.28608 7.33836 7.39212 7.58693 7.91853 8.08270 8.22440 8.55148 9.06861 9.60935 11.08139 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.019079 B = 0.003273 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.210285 B = 8553.192652 C = 8850.938239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.313 6.313 4 C 0.087 3.913 5 C -0.183 4.183 6 C -0.065 4.065 7 C -0.066 4.066 8 C 0.090 3.910 9 N -0.525 5.525 10 C 0.186 3.814 11 C -0.504 4.504 12 H 0.085 0.915 13 C 0.056 3.944 14 N -0.899 5.899 15 Si 0.883 3.117 16 H -0.270 1.270 17 H -0.285 1.285 18 H -0.286 1.286 19 C 0.093 3.907 20 C -0.110 4.110 21 C -0.124 4.124 22 C -0.115 4.115 23 C -0.159 4.159 24 C -0.113 4.113 25 C 0.064 3.936 26 F -0.138 7.138 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.080 0.920 35 H 0.034 0.966 36 H 0.001 0.999 37 H 0.032 0.968 38 H 0.259 0.741 39 H 0.054 0.946 40 H 0.093 0.907 41 H 0.042 0.958 42 H 0.049 0.951 43 H 0.054 0.946 44 H 0.038 0.962 45 H 0.090 0.910 46 H 0.031 0.969 47 H 0.111 0.889 48 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.292 -1.039 4.449 17.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.228 6.228 4 C 0.041 3.959 5 C -0.202 4.202 6 C -0.084 4.084 7 C -0.067 4.067 8 C -0.038 4.038 9 N -0.249 5.249 10 C 0.062 3.938 11 C -0.542 4.542 12 H 0.102 0.898 13 C -0.145 4.145 14 N -0.539 5.539 15 Si 0.711 3.289 16 H -0.194 1.194 17 H -0.212 1.212 18 H -0.212 1.212 19 C -0.016 4.016 20 C -0.148 4.148 21 C -0.162 4.162 22 C -0.153 4.153 23 C -0.197 4.197 24 C -0.132 4.132 25 C 0.045 3.955 26 F -0.117 7.117 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.151 0.849 33 H 0.153 0.847 34 H 0.099 0.901 35 H 0.052 0.948 36 H 0.018 0.982 37 H 0.050 0.950 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.112 0.888 41 H 0.061 0.939 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.057 0.943 45 H 0.108 0.892 46 H 0.050 0.950 47 H 0.129 0.871 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -17.476 -1.324 4.287 18.042 hybrid contribution 0.696 0.622 -0.608 1.114 sum -16.779 -0.702 3.679 17.192 Atomic orbital electron populations 1.21770 0.92768 1.02779 1.03545 1.22796 0.95836 0.81942 1.01547 1.86098 1.18272 1.29329 1.89058 1.18885 0.83120 0.92909 1.00997 1.21103 0.94113 0.97376 1.07584 1.20926 0.93736 0.97470 0.96244 1.19756 0.96262 0.91965 0.98741 1.21020 0.89177 1.00398 0.93215 1.62475 1.14689 1.40519 1.07214 1.19952 0.79931 0.95728 0.98181 1.21615 0.92812 1.47155 0.92623 0.89766 1.24930 0.97011 0.95909 0.96642 1.69955 1.02925 1.50475 1.30556 0.86669 0.78995 0.77667 0.85555 1.19430 1.21169 1.21180 1.22103 0.95519 0.89717 0.94231 1.22570 0.98700 0.99511 0.93977 1.22462 0.97559 0.97827 0.98391 1.22400 0.98361 0.99337 0.95158 1.22955 1.01935 0.96688 0.98109 1.20951 0.90108 1.00556 1.01572 1.16898 0.87807 0.80832 1.09990 1.91467 1.72075 1.53664 1.94475 0.91565 0.91500 0.90350 0.91839 0.91957 0.84877 0.84721 0.90123 0.94752 0.98204 0.94981 0.93135 0.92811 0.88847 0.93918 0.93233 0.92736 0.94304 0.89152 0.95007 0.87133 0.84488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 10.28 37.16 0.38 -0.67 16 2 C 0.05 0.48 5.46 37.16 0.20 0.68 16 3 O -0.31 -4.10 10.00 -19.60 -0.20 -4.29 16 4 C 0.09 1.21 6.69 -39.17 -0.26 0.94 16 5 C -0.18 -2.27 9.04 -39.45 -0.36 -2.62 16 6 C -0.07 -0.88 9.72 -39.59 -0.38 -1.27 16 7 C -0.07 -0.99 4.94 -104.61 -0.52 -1.50 16 8 C 0.09 1.50 5.03 -4.97 -0.03 1.47 16 9 N -0.53 -10.36 4.41 -228.18 -1.01 -11.37 16 10 C 0.19 4.40 4.20 -4.97 -0.02 4.37 16 11 C -0.50 -12.67 5.49 -34.44 -0.19 -12.86 16 12 H 0.08 2.08 3.18 -52.49 -0.17 1.91 16 13 C 0.06 1.48 5.42 -17.82 -0.10 1.38 16 14 N -0.90 -25.30 13.29 55.43 0.74 -24.56 16 15 Si 0.88 20.70 28.96 -169.99 -4.92 15.78 16 16 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 19 C 0.09 1.75 2.72 -66.60 -0.18 1.57 16 20 C -0.11 -2.05 5.86 -25.03 -0.15 -2.20 16 21 C -0.12 -2.18 6.85 -24.69 -0.17 -2.35 16 22 C -0.12 -2.21 6.12 -25.07 -0.15 -2.37 16 23 C -0.16 -3.12 5.62 -25.61 -0.14 -3.26 16 24 C -0.11 -1.64 8.21 -39.54 -0.32 -1.96 16 25 C 0.06 0.97 7.31 -39.30 -0.29 0.68 16 26 F -0.14 -2.17 17.11 2.25 0.04 -2.14 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16 30 H 0.06 0.52 7.66 -51.93 -0.40 0.12 16 31 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 32 H 0.13 1.29 6.30 -52.49 -0.33 0.96 16 33 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 34 H 0.08 1.31 7.98 -51.93 -0.41 0.89 16 35 H 0.03 0.56 7.99 -51.93 -0.41 0.15 16 36 H 0.00 0.02 5.83 -51.93 -0.30 -0.28 16 37 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 38 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 39 H 0.05 0.95 5.32 -51.93 -0.28 0.67 16 40 H 0.09 1.97 5.67 -51.93 -0.29 1.67 16 41 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.09 1.98 5.33 -51.93 -0.28 1.70 16 46 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.11 2.50 3.94 -51.93 -0.20 2.29 16 48 H 0.14 1.88 7.59 -52.48 -0.40 1.48 16 LS Contribution 368.10 15.07 5.55 5.55 Total: -1.00 -28.09 368.10 -9.71 -37.80 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -7.23 Total: 3.19 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: -2.67 Total: -19.96 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: -0.27 Total: -35.93 kcal Atomic # 8 Polarization: -4.10 SS G_CDS: -0.20 Total: -4.29 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.14 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.92 Total: 15.78 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.09 -9.71 -37.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237957351.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.614 kcal (2) G-P(sol) polarization free energy of solvation -28.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds