Wall clock time and date at job start Sat Apr 11 2020 00:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42897 * 109.46818 * 2 1 4 4 C 1.35955 * 116.99993 * 179.97438 * 3 2 1 5 5 C 1.38657 * 120.06324 * 0.02562 * 4 3 2 6 6 C 1.38183 * 119.97055 * 180.02562 * 5 4 3 7 7 C 1.38266 * 120.09350 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.93392 * 179.97438 * 7 6 5 9 9 N 1.46906 * 109.46817 * 83.40847 * 8 7 6 10 10 C 1.46900 * 110.99624 * 192.26631 * 9 8 7 11 11 C 1.50705 * 109.46980 * 178.14381 * 10 9 8 12 12 H 1.07997 * 120.00037 * 5.08168 * 11 10 9 13 13 C 1.37879 * 119.99970 * 185.08246 * 11 10 9 14 14 N 1.31509 * 120.00001 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99627 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47480 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47064 * 120.00282 * 15 13 11 18 18 H 1.48501 * 109.47098 * 239.99789 * 15 13 11 19 19 C 1.46894 * 111.00053 * 68.31200 * 9 8 7 20 20 C 1.54263 * 110.03059 * 218.66146 * 19 9 8 21 21 C 1.54970 * 104.16110 * 217.13375 * 20 19 9 22 22 C 1.54890 * 102.77468 * 37.89013 * 21 20 19 23 23 C 1.53873 * 110.03638 * 101.44468 * 19 9 8 24 24 C 1.38254 * 120.12525 * 0.25555 * 7 6 5 25 25 C 1.38330 * 120.03314 * 359.48610 * 24 7 6 26 26 F 1.35096 * 120.05253 * 180.23845 * 25 24 7 27 27 H 1.08998 * 109.47355 * 299.99114 * 1 2 3 28 28 H 1.09000 * 109.47160 * 60.00126 * 1 2 3 29 29 H 1.09008 * 109.46853 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46884 * 240.00665 * 2 1 3 31 31 H 1.08994 * 109.47446 * 120.00151 * 2 1 3 32 32 H 1.07998 * 120.01368 * 0.02562 * 5 4 3 33 33 H 1.08000 * 119.95454 * 179.97438 * 6 5 4 34 34 H 1.09004 * 109.47360 * 323.40998 * 8 7 6 35 35 H 1.08997 * 109.47006 * 203.40228 * 8 7 6 36 36 H 1.08998 * 109.47401 * 298.14077 * 10 9 8 37 37 H 1.08997 * 109.47768 * 58.14450 * 10 9 8 38 38 H 0.96999 * 119.99740 * 180.02562 * 14 13 11 39 39 H 1.09004 * 110.01933 * 340.05423 * 19 9 8 40 40 H 1.08997 * 110.48959 * 335.78294 * 20 19 9 41 41 H 1.09006 * 110.48732 * 98.42920 * 20 19 9 42 42 H 1.09000 * 110.72290 * 279.58098 * 21 20 19 43 43 H 1.08997 * 110.92301 * 156.29179 * 21 20 19 44 44 H 1.09004 * 110.48986 * 203.40560 * 22 21 20 45 45 H 1.09001 * 110.60444 * 80.81385 * 22 21 20 46 46 H 1.09003 * 110.03416 * 238.57409 * 23 19 9 47 47 H 1.09004 * 110.02828 * 359.97438 * 23 19 9 48 48 H 1.08005 * 119.98316 * 179.74457 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3541 1.5255 0.0005 5 6 4.2000 0.4268 0.0005 6 6 5.5696 0.6102 0.0016 7 6 6.0980 1.8879 0.0033 8 6 7.5922 2.0837 0.0050 9 7 8.0998 1.9908 -1.3704 10 6 9.5649 1.8851 -1.3848 11 6 10.0446 1.7461 -2.8067 12 1 9.3417 1.8195 -3.6233 13 6 11.3809 1.5253 -3.0650 14 7 12.2368 1.4355 -2.0705 15 14 11.9753 1.3524 -4.8274 16 1 10.8234 1.4912 -5.7543 17 1 12.9749 2.4113 -5.1189 18 1 12.6004 0.0178 -5.0103 19 6 7.6463 3.1316 -2.1771 20 6 7.2973 2.6636 -3.6050 21 6 7.7716 3.8272 -4.5119 22 6 9.0816 4.2855 -3.8241 23 6 8.7800 4.1627 -2.3162 24 6 5.2582 2.9861 0.0091 25 6 3.8863 2.8086 0.0027 26 9 3.0654 3.8815 0.0036 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.7886 -0.5717 -0.0003 33 1 6.2282 -0.2457 0.0020 34 1 8.0591 1.3122 0.6175 35 1 7.8295 3.0656 0.4143 36 1 9.9983 2.7815 -0.9412 37 1 9.8719 1.0109 -0.8108 38 1 13.1769 1.2806 -2.2523 39 1 6.7756 3.5944 -1.7125 40 1 7.8349 1.7471 -3.8482 41 1 6.2222 2.5145 -3.7055 42 1 7.0377 4.6331 -4.5208 43 1 7.9696 3.4757 -5.5245 44 1 9.3080 5.3194 -4.0848 45 1 9.9093 3.6330 -4.1019 46 1 8.4592 5.1261 -1.9198 47 1 9.6666 3.8168 -1.7847 48 1 5.6735 3.9831 0.0146 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237957351.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:38:44 Heat of formation + Delta-G solvation = -55.615150 kcal Electronic energy + Delta-G solvation = -28080.632359 eV Core-core repulsion = 24243.217722 eV Total energy + Delta-G solvation = -3837.414636 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.185 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.82168 -41.19415 -40.36713 -38.64271 -35.77682 -34.61377 -32.88238 -31.84002 -31.20352 -29.61793 -28.84234 -28.10913 -25.69221 -24.96476 -23.72853 -23.06271 -22.13768 -21.37791 -19.81041 -19.30708 -18.59289 -17.76569 -17.65578 -17.33519 -16.92715 -16.68876 -16.31194 -16.15972 -15.83423 -15.45487 -15.24476 -14.89072 -14.60618 -14.40720 -14.15180 -14.03176 -13.67227 -13.45892 -13.36780 -12.99494 -12.89678 -12.81043 -12.76849 -12.53795 -12.31751 -12.27132 -12.06477 -11.93626 -11.71015 -11.67101 -11.60849 -11.53684 -11.22875 -10.91802 -10.59996 -10.34768 -9.89631 -9.12161 -8.80220 -8.07659 -6.07712 0.15456 0.23687 1.40777 1.44994 1.54291 2.11059 2.45196 2.55581 3.19771 3.27616 3.46226 3.70666 3.79972 3.98470 4.00399 4.06754 4.07273 4.22402 4.26455 4.32214 4.37869 4.44394 4.55052 4.65898 4.72829 4.81061 4.85145 4.88983 4.91953 4.94878 4.99353 5.03454 5.07858 5.15015 5.18703 5.23875 5.24944 5.25658 5.32639 5.39271 5.56570 5.62498 5.67964 5.75153 5.87501 5.96279 6.22772 6.33530 6.49912 6.78624 7.07661 7.56803 9.04831 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.019079 B = 0.003273 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.210285 B = 8553.192652 C = 8850.938239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.042 3.958 3 O -0.331 6.331 4 C 0.089 3.911 5 C -0.173 4.173 6 C -0.065 4.065 7 C -0.078 4.078 8 C 0.093 3.907 9 N -0.528 5.528 10 C 0.201 3.799 11 C -0.494 4.494 12 H 0.092 0.908 13 C 0.006 3.994 14 N -0.938 5.938 15 Si 0.937 3.063 16 H -0.258 1.258 17 H -0.287 1.287 18 H -0.288 1.288 19 C 0.094 3.906 20 C -0.108 4.108 21 C -0.116 4.116 22 C -0.118 4.118 23 C -0.158 4.158 24 C -0.111 4.111 25 C 0.044 3.956 26 F -0.147 7.147 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.103 0.897 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.164 0.836 33 H 0.143 0.857 34 H 0.079 0.921 35 H 0.035 0.965 36 H -0.018 1.018 37 H 0.002 0.998 38 H 0.257 0.743 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.058 0.942 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.056 0.944 45 H 0.060 0.940 46 H 0.049 0.951 47 H 0.076 0.924 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.676 -1.434 3.558 20.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.032 4.032 3 O -0.245 6.245 4 C 0.043 3.957 5 C -0.192 4.192 6 C -0.084 4.084 7 C -0.079 4.079 8 C -0.035 4.035 9 N -0.251 5.251 10 C 0.076 3.924 11 C -0.532 4.532 12 H 0.110 0.890 13 C -0.191 4.191 14 N -0.581 5.581 15 Si 0.764 3.236 16 H -0.182 1.182 17 H -0.213 1.213 18 H -0.214 1.214 19 C -0.015 4.015 20 C -0.146 4.146 21 C -0.154 4.154 22 C -0.155 4.155 23 C -0.196 4.196 24 C -0.130 4.130 25 C 0.024 3.976 26 F -0.126 7.126 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.122 0.878 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.182 0.818 33 H 0.161 0.839 34 H 0.097 0.903 35 H 0.053 0.947 36 H -0.001 1.001 37 H 0.020 0.980 38 H 0.066 0.934 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.092 0.908 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.067 0.933 47 H 0.095 0.905 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -19.892 -1.720 3.388 20.252 hybrid contribution 1.310 0.726 -0.262 1.520 sum -18.582 -0.993 3.127 18.870 Atomic orbital electron populations 1.21812 0.91440 1.04306 1.03067 1.23171 0.96979 0.80278 1.02792 1.86103 1.17674 1.32016 1.88745 1.19028 0.83916 0.92800 1.00004 1.21342 0.93260 0.98427 1.06138 1.21087 0.94575 0.97141 0.95565 1.19540 0.94800 0.92851 1.00709 1.20995 0.90629 1.00452 0.91425 1.62374 1.12012 1.41388 1.09350 1.19620 0.82450 0.93492 0.96845 1.21927 0.92759 1.44969 0.93524 0.89049 1.25619 0.97479 0.96279 0.99741 1.70080 1.03036 1.52526 1.32411 0.85803 0.78659 0.77158 0.81968 1.18192 1.21293 1.21447 1.22169 0.95647 0.89186 0.94465 1.22506 0.99307 0.98800 0.93978 1.22440 0.96882 0.97939 0.98165 1.22350 0.98397 0.99815 0.94973 1.22874 1.00792 0.97699 0.98233 1.20932 0.90077 1.00658 1.01381 1.17088 0.87915 0.81261 1.11321 1.91438 1.72273 1.54157 1.94683 0.91918 0.92125 0.87797 0.90768 0.90401 0.81835 0.83949 0.90256 0.94687 1.00102 0.97964 0.93433 0.91191 0.91472 0.92347 0.90810 0.92028 0.92543 0.92158 0.93250 0.90545 0.84106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 10.28 71.98 0.74 -0.95 16 2 C 0.04 0.63 5.46 71.98 0.39 1.02 16 3 O -0.33 -7.96 10.00 -93.04 -0.93 -8.89 16 4 C 0.09 2.29 6.69 22.53 0.15 2.44 16 5 C -0.17 -3.82 9.04 22.36 0.20 -3.62 16 6 C -0.07 -1.65 9.72 22.26 0.22 -1.43 16 7 C -0.08 -2.24 4.94 -19.85 -0.10 -2.34 16 8 C 0.09 3.08 5.03 85.56 0.43 3.51 16 9 N -0.53 -20.86 4.41 -875.82 -3.86 -24.73 16 10 C 0.20 9.81 4.20 85.56 0.36 10.17 16 11 C -0.49 -25.25 5.49 25.60 0.14 -25.11 16 12 H 0.09 4.51 3.18 -2.91 -0.01 4.50 16 13 C 0.01 0.30 5.42 84.66 0.46 0.76 16 14 N -0.94 -54.50 13.29 21.45 0.28 -54.22 16 15 Si 0.94 42.99 28.96 68.60 1.99 44.97 16 16 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 17 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 18 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 19 C 0.09 3.42 2.72 45.64 0.12 3.55 16 20 C -0.11 -3.84 5.86 31.70 0.19 -3.65 16 21 C -0.12 -3.78 6.85 31.91 0.22 -3.56 16 22 C -0.12 -4.38 6.12 31.67 0.19 -4.19 16 23 C -0.16 -6.10 5.62 31.32 0.18 -5.93 16 24 C -0.11 -3.11 8.21 22.30 0.18 -2.93 16 25 C 0.04 1.26 7.31 22.45 0.16 1.42 16 26 F -0.15 -4.49 17.11 44.97 0.77 -3.72 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.10 0.65 8.14 -2.38 -0.02 0.63 16 30 H 0.07 0.96 7.66 -2.39 -0.02 0.94 16 31 H 0.08 0.93 7.66 -2.39 -0.02 0.91 16 32 H 0.16 2.54 6.30 -2.91 -0.02 2.52 16 33 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 34 H 0.08 2.62 7.98 -2.39 -0.02 2.60 16 35 H 0.03 1.15 7.99 -2.39 -0.02 1.13 16 36 H -0.02 -0.95 5.83 -2.39 -0.01 -0.96 16 37 H 0.00 0.12 8.07 -2.39 -0.02 0.11 16 38 H 0.26 14.33 8.31 -92.71 -0.77 13.55 16 39 H 0.07 2.34 5.32 -2.38 -0.01 2.33 16 40 H 0.07 2.76 5.67 -2.39 -0.01 2.74 16 41 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 42 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 45 H 0.06 2.61 5.33 -2.39 -0.01 2.60 16 46 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.08 3.54 3.94 -2.38 -0.01 3.53 16 48 H 0.14 3.72 7.59 -2.91 -0.02 3.69 16 Total: -1.00 -61.34 368.10 3.45 -57.89 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.97 Total: 19.54 kcal Atomic # 6 Polarization: -35.07 SS G_CDS: 4.24 Total: -30.83 kcal Atomic # 7 Polarization: -75.37 SS G_CDS: -3.58 Total: -78.95 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: -0.93 Total: -8.89 kcal Atomic # 9 Polarization: -4.49 SS G_CDS: 0.77 Total: -3.72 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 1.99 Total: 44.97 kcal Total: -61.34 3.45 -57.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237957351.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.274 kcal (2) G-P(sol) polarization free energy of solvation -61.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds