Wall clock time and date at job start Sat Apr 11 2020 00:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50697 * 120.00429 * 2 1 4 4 N 1.46498 * 109.47669 * 124.99806 * 3 2 1 5 5 C 1.46492 * 120.00289 * 274.91380 * 4 3 2 6 6 C 1.50693 * 109.47242 * 269.99983 * 5 4 3 7 7 C 1.30998 * 120.00700 * 124.99700 * 6 5 4 8 8 C 1.34780 * 119.99864 * 94.91190 * 4 3 2 9 9 O 1.21280 * 119.99893 * 174.85247 * 8 4 3 10 10 C 1.50701 * 120.00068 * 354.85098 * 8 4 3 11 11 H 1.08998 * 109.47241 * 330.68926 * 10 8 4 12 12 C 1.52996 * 109.47135 * 90.69039 * 10 8 4 13 13 N 1.46898 * 109.47079 * 210.69346 * 10 8 4 14 14 C 1.46959 * 111.00016 * 179.05956 * 13 10 8 15 15 C 1.53052 * 109.38323 * 176.82161 * 14 13 10 16 16 N 1.46952 * 109.36668 * 58.38471 * 15 14 13 17 17 C 1.46904 * 111.00139 * 176.81235 * 16 15 14 18 18 C 1.50693 * 109.47282 * 190.00015 * 17 16 15 19 19 H 1.08001 * 120.00171 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00304 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99800 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00428 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46933 * 59.99913 * 22 20 18 24 24 H 1.48493 * 109.47427 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46930 * 300.00150 * 22 20 18 26 26 C 1.46956 * 110.88308 * 300.68126 * 16 15 14 27 27 C 1.46951 * 111.02322 * 55.24084 * 13 10 8 28 28 H 1.08000 * 120.00140 * 180.02562 * 1 2 3 29 29 H 1.08003 * 119.99623 * 0.02562 * 1 2 3 30 30 H 1.08003 * 120.00081 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.47072 * 4.99900 * 3 2 1 32 32 H 1.09003 * 109.46942 * 244.99811 * 3 2 1 33 33 H 1.09006 * 109.46924 * 29.99921 * 5 4 3 34 34 H 1.09007 * 109.47499 * 149.99525 * 5 4 3 35 35 H 1.08004 * 120.00319 * 304.99802 * 6 5 4 36 36 H 1.08008 * 119.99449 * 0.02562 * 7 6 5 37 37 H 1.07995 * 120.01215 * 179.97438 * 7 6 5 38 38 H 1.08997 * 109.47134 * 65.40690 * 12 10 8 39 39 H 1.09007 * 109.47156 * 185.40928 * 12 10 8 40 40 H 1.08998 * 109.47202 * 305.40447 * 12 10 8 41 41 H 1.08995 * 109.49193 * 56.84043 * 14 13 10 42 42 H 1.09004 * 109.48688 * 296.79129 * 14 13 10 43 43 H 1.09000 * 109.49018 * 178.35448 * 15 14 13 44 44 H 1.09000 * 109.48485 * 298.41884 * 15 14 13 45 45 H 1.08997 * 109.47073 * 310.00575 * 17 16 15 46 46 H 1.08999 * 109.47013 * 70.00224 * 17 16 15 47 47 H 0.96998 * 120.00392 * 179.97438 * 21 20 18 48 48 H 1.08995 * 109.49162 * 179.28570 * 26 16 15 49 49 H 1.08997 * 109.49003 * 299.35694 * 26 16 15 50 50 H 1.09000 * 109.46910 * 63.20356 * 27 13 10 51 51 H 1.09000 * 109.50839 * 303.16094 * 27 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5291 1.7640 2.4518 6 6 2.7163 3.2530 2.5877 7 6 1.6986 4.0152 2.9029 8 6 4.2772 0.9590 0.9575 9 8 5.0696 1.0694 1.8691 10 6 4.7278 0.4049 -0.3695 11 1 3.8918 -0.0974 -0.8562 12 6 5.2231 1.5478 -1.2578 13 7 5.8180 -0.5558 -0.1543 14 6 6.2688 -1.1348 -1.4276 15 6 7.4544 -2.0677 -1.1699 16 7 7.0496 -3.1218 -0.2293 17 6 8.1398 -4.0828 -0.0145 18 6 7.6182 -5.2712 0.7513 19 1 6.5805 -5.3091 1.0484 20 6 8.4656 -6.3102 1.0728 21 7 9.7291 -6.2643 0.7106 22 14 7.8189 -7.7837 2.0214 23 1 6.7325 -8.4339 1.2455 24 1 8.9209 -8.7550 2.2387 25 1 7.2891 -7.3338 3.3337 26 6 6.5993 -2.5429 1.0441 27 6 5.4137 -1.6099 0.7864 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9354 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3587 2.1316 0.0895 32 1 2.6213 1.4024 -0.9314 33 1 1.4728 1.5189 2.5633 34 1 3.1040 1.2534 3.2244 35 1 3.6896 3.6920 2.4252 36 1 0.7253 3.5762 3.0658 37 1 1.8327 5.0823 3.0008 38 1 6.1176 1.9885 -0.8178 39 1 5.4585 1.1615 -2.2496 40 1 4.4459 2.3078 -1.3391 41 1 6.5751 -0.3354 -2.1023 42 1 5.4533 -1.6996 -1.8792 43 1 7.7717 -2.5207 -2.1092 44 1 8.2799 -1.4975 -0.7437 45 1 8.5279 -4.4132 -0.9779 46 1 8.9378 -3.6057 0.5544 47 1 10.3254 -6.9951 0.9371 48 1 6.2931 -3.3422 1.7189 49 1 7.4150 -1.9781 1.4954 50 1 4.5883 -2.1802 0.3602 51 1 5.0962 -1.1573 1.7258 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611175201.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:38:35 Heat of formation + Delta-G solvation = 32.281115 kcal Electronic energy + Delta-G solvation = -28292.902907 eV Core-core repulsion = 24615.052795 eV Total energy + Delta-G solvation = -3677.850112 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 3.12 seconds Orbital eigenvalues (eV) -40.59271 -38.47429 -36.70092 -35.45546 -34.56324 -32.86060 -32.51685 -31.04554 -30.35229 -27.54433 -27.27849 -26.19613 -25.01029 -23.26824 -22.48397 -21.36376 -20.49948 -20.43019 -19.18701 -18.94817 -17.30228 -16.97932 -16.25297 -15.87147 -15.60945 -15.24366 -14.85081 -14.61411 -14.47778 -14.20754 -13.92239 -13.75941 -13.55968 -13.47429 -13.30987 -13.03503 -12.63897 -12.48241 -12.23056 -12.03816 -11.93222 -11.80922 -11.69471 -11.51291 -11.48799 -11.10791 -10.83136 -10.68332 -10.62867 -10.39826 -10.21908 -10.00283 -9.81539 -9.69499 -9.49175 -9.14512 -8.96093 -8.39557 -8.09940 -7.17322 -5.98549 -3.99831 1.69641 1.92726 2.53352 2.94501 3.36110 3.39761 3.42718 3.98985 4.26322 4.45719 4.51170 4.63087 4.66357 4.79692 4.91415 4.95280 4.96907 5.05105 5.15994 5.22788 5.29051 5.36952 5.44444 5.50293 5.53772 5.55844 5.60554 5.62243 5.77150 5.86342 5.92196 6.00530 6.03778 6.16309 6.22149 6.25290 6.27482 6.33645 6.47503 6.49320 6.65458 6.78637 7.03100 7.20100 7.28181 7.39720 7.43501 7.84003 8.11649 8.13849 8.25945 8.60396 9.07298 9.64025 11.12362 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.016199 B = 0.002898 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.114718 B = 9660.642753 C =10050.678120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.178 4.178 3 C 0.134 3.866 4 N -0.612 5.612 5 C 0.142 3.858 6 C -0.161 4.161 7 C -0.187 4.187 8 C 0.521 3.479 9 O -0.508 6.508 10 C 0.065 3.935 11 H 0.059 0.941 12 C -0.141 4.141 13 N -0.517 5.517 14 C 0.061 3.939 15 C 0.057 3.943 16 N -0.539 5.539 17 C 0.194 3.806 18 C -0.507 4.507 19 H 0.061 0.939 20 C 0.055 3.945 21 N -0.899 5.899 22 Si 0.898 3.102 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 C 0.071 3.929 27 C 0.056 3.944 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.112 0.888 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.111 0.889 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.074 0.926 42 H 0.039 0.961 43 H 0.073 0.927 44 H 0.032 0.968 45 H 0.029 0.971 46 H -0.008 1.008 47 H 0.261 0.739 48 H 0.085 0.915 49 H 0.031 0.969 50 H 0.033 0.967 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.921 19.950 -3.197 27.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.197 4.197 3 C 0.012 3.988 4 N -0.346 5.346 5 C 0.020 3.980 6 C -0.181 4.181 7 C -0.225 4.225 8 C 0.309 3.691 9 O -0.381 6.381 10 C -0.047 4.047 11 H 0.076 0.924 12 C -0.199 4.199 13 N -0.243 5.243 14 C -0.067 4.067 15 C -0.072 4.072 16 N -0.265 5.265 17 C 0.069 3.931 18 C -0.546 4.546 19 H 0.080 0.920 20 C -0.146 4.146 21 N -0.538 5.538 22 Si 0.725 3.275 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.203 1.203 26 C -0.057 4.057 27 C -0.071 4.071 28 H 0.119 0.881 29 H 0.116 0.884 30 H 0.130 0.870 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.110 0.890 35 H 0.129 0.871 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.057 0.943 43 H 0.091 0.909 44 H 0.050 0.950 45 H 0.048 0.952 46 H 0.010 0.990 47 H 0.071 0.929 48 H 0.103 0.897 49 H 0.049 0.951 50 H 0.051 0.949 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.271 19.886 -2.683 27.138 hybrid contribution -0.343 -0.890 0.474 1.065 sum -18.613 18.996 -2.209 26.687 Atomic orbital electron populations 1.23894 0.95684 1.02146 0.99525 1.23414 0.96445 0.99084 1.00731 1.20757 0.92621 0.95629 0.89843 1.48010 1.09622 1.67029 1.09942 1.20528 1.00120 0.92114 0.85196 1.23359 0.99491 0.95964 0.99256 1.23843 0.98010 0.99735 1.00926 1.20645 0.81177 0.77216 0.90091 1.90724 1.51951 1.52401 1.43047 1.21635 0.94412 0.95563 0.93079 0.92361 1.21805 1.02266 0.96514 0.99316 1.62016 1.33898 1.16163 1.12206 1.22242 0.97928 0.96561 0.89945 1.22051 0.94971 0.92469 0.97719 1.62308 1.39784 1.13909 1.10459 1.19686 0.87163 0.89574 0.96674 1.21116 0.96137 1.02612 1.34691 0.92042 1.24986 0.94829 0.98506 0.96282 1.69950 1.04126 1.32799 1.46962 0.86568 0.78297 0.82241 0.80348 1.20234 1.21364 1.20269 1.21927 0.95327 0.95787 0.92681 1.22321 0.97726 0.91311 0.95768 0.88090 0.88433 0.86960 0.89886 0.89064 0.90156 0.88964 0.87130 0.88557 0.88366 0.90714 0.91088 0.92167 0.90755 0.94297 0.90913 0.94987 0.95244 0.99032 0.92898 0.89664 0.95072 0.94868 0.90644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.10 14.32 29.02 0.42 -0.68 16 2 C -0.18 -1.35 9.46 -36.03 -0.34 -1.69 16 3 C 0.13 0.98 5.44 -5.20 -0.03 0.95 16 4 N -0.61 -6.14 2.44 -176.44 -0.43 -6.57 16 5 C 0.14 1.33 5.83 -5.20 -0.03 1.30 16 6 C -0.16 -1.41 9.84 -36.03 -0.35 -1.77 16 7 C -0.19 -1.28 14.32 29.02 0.42 -0.87 16 8 C 0.52 6.93 5.66 -10.98 -0.06 6.87 16 9 O -0.51 -8.82 15.05 5.56 0.08 -8.74 16 10 C 0.06 0.80 1.62 -68.87 -0.11 0.69 16 11 H 0.06 0.65 6.36 -51.93 -0.33 0.32 16 12 C -0.14 -1.41 8.56 37.16 0.32 -1.09 16 13 N -0.52 -8.20 4.34 -227.88 -0.99 -9.19 16 14 C 0.06 0.93 5.33 -3.77 -0.02 0.91 16 15 C 0.06 1.07 5.61 -3.77 -0.02 1.05 16 16 N -0.54 -12.15 4.70 -235.92 -1.11 -13.26 16 17 C 0.19 5.22 4.72 -4.98 -0.02 5.20 16 18 C -0.51 -14.55 8.47 -34.44 -0.29 -14.85 16 19 H 0.06 1.74 7.13 -52.49 -0.37 1.37 16 20 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 21 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 22 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 26 C 0.07 1.52 5.43 -3.77 -0.02 1.50 16 27 C 0.06 1.00 5.23 -3.77 -0.02 0.98 16 28 H 0.10 0.61 8.06 -52.49 -0.42 0.18 16 29 H 0.10 0.47 7.84 -52.48 -0.41 0.06 16 30 H 0.11 1.03 7.99 -52.48 -0.42 0.61 16 31 H 0.08 0.47 7.76 -51.93 -0.40 0.07 16 32 H 0.09 0.60 5.39 -51.93 -0.28 0.32 16 33 H 0.08 0.60 7.72 -51.93 -0.40 0.19 16 34 H 0.09 1.04 7.50 -51.93 -0.39 0.65 16 35 H 0.11 1.13 8.06 -52.48 -0.42 0.71 16 36 H 0.10 0.54 7.84 -52.48 -0.41 0.13 16 37 H 0.10 0.59 8.06 -52.49 -0.42 0.17 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.07 0.62 6.65 -51.92 -0.35 0.28 16 40 H 0.06 0.47 7.24 -51.93 -0.38 0.09 16 41 H 0.07 0.94 6.29 -51.93 -0.33 0.62 16 42 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.07 1.31 8.07 -51.93 -0.42 0.89 16 44 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.03 0.84 8.03 -51.93 -0.42 0.42 16 46 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 47 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 48 H 0.09 1.92 6.79 -51.93 -0.35 1.57 16 49 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 50 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 51 H 0.08 1.36 6.04 -51.93 -0.31 1.05 16 LS Contribution 401.90 15.07 6.06 6.06 Total: -1.00 -33.01 401.90 -9.85 -42.86 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -8.91 Total: -1.68 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -0.27 Total: 0.00 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: -1.79 Total: -55.50 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.08 Total: -8.74 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.01 -9.85 -42.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611175201.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.146 kcal (2) G-P(sol) polarization free energy of solvation -33.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.12 seconds