Wall clock time and date at job start Sat Apr 11 2020 00:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46505 * 109.46811 * 2 1 4 4 C 1.34777 * 119.99692 * 84.96326 * 3 2 1 5 5 O 1.21282 * 120.00338 * 5.09705 * 4 3 2 6 6 C 1.50707 * 119.99766 * 185.09797 * 4 3 2 7 7 H 1.08996 * 110.29753 * 36.68443 * 6 4 3 8 8 C 1.55321 * 110.33541 * 158.95593 * 6 4 3 9 9 C 1.53933 * 102.08462 * 141.07854 * 8 6 4 10 10 H 1.08996 * 111.53849 * 78.91614 * 9 8 6 11 11 C 1.52368 * 113.26676 * 204.92526 * 9 8 6 12 12 C 1.53630 * 107.59445 * 174.93485 * 11 9 8 13 13 C 1.52830 * 110.61473 * 303.58941 * 12 11 9 14 14 C 1.53642 * 110.64210 * 53.86585 * 13 12 11 15 15 N 1.45528 * 107.85796 * 302.86973 * 14 13 12 16 16 C 1.46336 * 117.21808 * 185.55466 * 15 14 13 17 17 C 1.46497 * 120.00156 * 264.95574 * 3 2 1 18 18 C 1.53944 * 113.74220 * 36.67731 * 17 3 2 19 19 N 1.47578 * 86.12313 * 222.04924 * 18 17 3 20 20 C 1.36926 * 134.49558 * 204.64382 * 19 18 17 21 21 H 1.08004 * 119.99936 * 179.97438 * 20 19 18 22 22 C 1.38806 * 120.00227 * 359.97438 * 20 19 18 23 23 N 1.31616 * 120.00069 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 120.00310 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46890 * 59.99949 * 24 22 20 26 26 H 1.48505 * 109.47253 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47097 * 299.99699 * 24 22 20 28 28 C 1.47583 * 91.01197 * 24.63833 * 19 18 17 29 29 H 1.08997 * 109.47022 * 294.29246 * 1 2 3 30 30 H 1.09007 * 109.46985 * 54.28416 * 1 2 3 31 31 H 1.08994 * 109.47279 * 174.28586 * 1 2 3 32 32 H 1.08998 * 109.46742 * 240.00469 * 2 1 3 33 33 H 1.08999 * 109.47163 * 120.00185 * 2 1 3 34 34 H 1.08996 * 110.91197 * 259.27502 * 8 6 4 35 35 H 1.08999 * 110.90852 * 22.88356 * 8 6 4 36 36 H 1.09002 * 109.83478 * 55.40945 * 11 9 8 37 37 H 1.09001 * 109.88235 * 294.48542 * 11 9 8 38 38 H 1.09003 * 109.25003 * 183.30535 * 12 11 9 39 39 H 1.08999 * 109.22120 * 63.86303 * 12 11 9 40 40 H 1.08998 * 109.24030 * 293.57007 * 13 12 11 41 41 H 1.08991 * 109.24364 * 174.16855 * 13 12 11 42 42 H 1.09006 * 109.78150 * 183.28234 * 14 13 12 43 43 H 1.08994 * 109.78276 * 62.46364 * 14 13 12 44 44 H 1.09002 * 110.15660 * 88.94738 * 16 15 14 45 45 H 1.09007 * 110.21211 * 327.22801 * 16 15 14 46 46 H 1.08998 * 112.94493 * 168.41601 * 17 3 2 47 47 H 1.09008 * 113.76856 * 336.35186 * 18 17 3 48 48 H 1.08997 * 113.77002 * 107.74528 * 18 17 3 49 49 H 0.97003 * 120.00435 * 180.02562 * 23 22 20 50 50 H 1.08995 * 113.77268 * 221.06049 * 28 19 18 51 51 H 1.09002 * 113.87098 * 89.67559 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1463 2.0507 1.1627 5 8 1.9462 1.4821 2.2151 6 6 2.5379 3.5060 1.1551 7 1 2.0801 4.0164 0.3078 8 6 2.1187 4.1848 2.4878 9 6 3.3112 5.1184 2.7630 10 1 3.2573 6.0247 2.1600 11 6 3.4834 5.4558 4.2389 12 6 4.7722 6.2800 4.3795 13 6 5.9646 5.5167 3.8040 14 6 5.6822 5.0814 2.3579 15 7 4.4695 4.2770 2.3627 16 6 4.0784 3.6482 1.1005 17 6 2.3676 2.0347 -1.2638 18 6 1.4456 1.6513 -2.4354 19 7 2.6754 1.5766 -3.2477 20 6 2.9521 1.6968 -4.5833 21 1 3.9683 1.5975 -4.9353 22 6 1.9266 1.9462 -5.4849 23 7 0.6882 2.0677 -5.0559 24 14 2.3041 2.1109 -7.3069 25 1 2.9179 0.8521 -7.8010 26 1 1.0462 2.3732 -8.0514 27 1 3.2482 3.2378 -7.5169 28 6 3.4873 1.3204 -2.0422 29 1 -0.3633 0.4228 0.9367 30 1 -0.3633 0.6000 -0.8344 31 1 -0.3633 -1.0225 -0.1023 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.1989 4.7556 2.3611 35 1 2.0107 3.4470 3.2829 36 1 3.5660 4.5379 4.8209 37 1 2.6313 6.0393 4.5876 38 1 4.9533 6.4868 5.4344 39 1 4.6560 7.2220 3.8435 40 1 6.1543 4.6338 4.4144 41 1 6.8445 6.1597 3.8204 42 1 6.5163 4.4892 1.9813 43 1 5.5395 5.9603 1.7293 44 1 4.5432 2.6665 1.0100 45 1 4.3677 4.2791 0.2600 46 1 2.5227 3.1085 -1.1583 47 1 0.9460 0.6913 -2.3053 48 1 0.7664 2.4480 -2.7388 49 1 -0.0285 2.2416 -5.6859 50 1 4.4383 1.8528 -2.0317 51 1 3.5889 0.2636 -1.7952 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950089574.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:42:52 Heat of formation + Delta-G solvation = 25.332607 kcal Electronic energy + Delta-G solvation = -28853.740709 eV Core-core repulsion = 25175.589287 eV Total energy + Delta-G solvation = -3678.151422 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 3.81 seconds Orbital eigenvalues (eV) -40.63512 -39.31936 -37.73648 -35.02857 -34.45237 -32.34574 -32.06691 -30.96752 -29.16634 -27.48799 -27.32131 -24.93289 -24.17314 -23.40495 -22.79988 -21.78707 -21.09880 -20.04501 -19.74020 -18.06525 -17.33034 -16.72567 -16.01520 -15.79844 -15.58580 -14.87238 -14.78913 -14.69405 -14.39286 -13.88582 -13.81422 -13.62624 -13.32371 -12.99478 -12.80223 -12.57332 -12.38400 -12.35684 -12.04301 -11.85519 -11.70051 -11.58102 -11.46935 -11.25986 -11.13835 -10.91679 -10.88707 -10.81419 -10.68500 -10.62578 -10.47460 -10.38172 -10.37184 -10.14019 -9.61817 -9.36393 -8.86723 -8.36510 -8.14694 -6.98553 -5.85696 -3.18883 2.88812 3.28963 3.35146 3.39988 3.40554 3.83322 4.37351 4.44381 4.49750 4.71445 4.75633 4.86552 4.94187 5.10126 5.14526 5.17196 5.25702 5.34165 5.35259 5.37756 5.43859 5.49849 5.52277 5.62724 5.66088 5.69481 5.71361 5.73437 5.79771 5.81412 5.86152 5.94502 5.95321 6.00070 6.02668 6.19245 6.20773 6.25394 6.31985 6.38408 6.44358 6.58291 6.87765 6.92640 7.10838 7.16431 7.17880 7.43408 7.83723 7.88390 8.51494 8.95467 9.61563 10.47871 11.31176 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.015472 B = 0.003370 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.261931 B = 8307.640392 C = 9448.073641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.113 3.887 3 N -0.595 5.595 4 C 0.526 3.474 5 O -0.546 6.546 6 C -0.120 4.120 7 H 0.099 0.901 8 C -0.101 4.101 9 C 0.067 3.933 10 H 0.054 0.946 11 C -0.105 4.105 12 C -0.120 4.120 13 C -0.114 4.114 14 C 0.060 3.940 15 N -0.533 5.533 16 C 0.069 3.931 17 C 0.079 3.921 18 C 0.156 3.844 19 N -0.606 5.606 20 C -0.225 4.225 21 H 0.081 0.919 22 C -0.005 4.005 23 N -0.920 5.920 24 Si 0.913 3.087 25 H -0.285 1.285 26 H -0.289 1.289 27 H -0.284 1.284 28 C 0.108 3.892 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.074 0.926 43 H 0.032 0.968 44 H 0.081 0.919 45 H 0.049 0.951 46 H 0.108 0.892 47 H 0.039 0.961 48 H 0.076 0.924 49 H 0.255 0.745 50 H 0.046 0.954 51 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.111 6.274 16.608 18.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.009 4.009 3 N -0.326 5.326 4 C 0.313 3.687 5 O -0.424 6.424 6 C -0.142 4.142 7 H 0.117 0.883 8 C -0.140 4.140 9 C -0.041 4.041 10 H 0.072 0.928 11 C -0.143 4.143 12 C -0.157 4.157 13 C -0.151 4.151 14 C -0.068 4.068 15 N -0.259 5.259 16 C -0.059 4.059 17 C -0.025 4.025 18 C 0.030 3.970 19 N -0.333 5.333 20 C -0.353 4.353 21 H 0.099 0.901 22 C -0.202 4.202 23 N -0.566 5.566 24 Si 0.743 3.257 25 H -0.211 1.211 26 H -0.215 1.215 27 H -0.210 1.210 28 C -0.019 4.019 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.115 0.885 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.051 0.949 44 H 0.099 0.901 45 H 0.067 0.933 46 H 0.126 0.874 47 H 0.056 0.944 48 H 0.094 0.906 49 H 0.065 0.935 50 H 0.064 0.936 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 5.060 5.629 17.122 18.720 hybrid contribution 0.089 0.587 -1.981 2.068 sum 5.149 6.215 15.141 17.158 Atomic orbital electron populations 1.22189 0.95972 1.02023 1.02426 1.21333 0.94411 0.82533 1.02625 1.48160 1.63993 1.13935 1.06561 1.20281 0.76530 0.88482 0.83380 1.90624 1.51291 1.69542 1.30934 1.22447 0.96912 0.94198 1.00622 0.88288 1.22384 0.96616 0.98286 0.96683 1.22586 0.90552 0.94495 0.96488 0.92832 1.21509 0.97019 1.00467 0.95266 1.21572 0.95077 0.98388 1.00695 1.21580 0.97532 1.00252 0.95780 1.21950 0.92714 0.95376 0.96807 1.62746 1.02728 1.31355 1.29034 1.22326 0.92827 1.00191 0.90526 1.24128 0.99444 0.97366 0.81573 1.22699 0.90821 0.99479 0.84033 1.45695 1.03325 1.82798 1.01444 1.18933 0.93627 1.42552 0.80168 0.90141 1.24786 0.95238 1.01998 0.98141 1.69792 0.98794 1.54556 1.33497 0.86189 0.76943 0.78005 0.84537 1.21132 1.21505 1.21010 1.22974 0.94804 0.97235 0.86873 0.92777 0.91480 0.92091 0.90103 0.90724 0.90933 0.88467 0.90628 0.91637 0.91990 0.92557 0.91200 0.91853 0.90777 0.94937 0.90082 0.93269 0.87401 0.94385 0.90587 0.93465 0.93575 0.94516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.48 9.88 37.16 0.37 -2.11 16 2 C 0.11 1.77 5.17 -4.04 -0.02 1.75 16 3 N -0.59 -9.62 2.70 -167.88 -0.45 -10.07 16 4 C 0.53 8.46 6.62 -10.98 -0.07 8.39 16 5 O -0.55 -10.15 15.20 5.56 0.08 -10.07 16 6 C -0.12 -1.61 2.44 -89.59 -0.22 -1.83 16 7 H 0.10 1.29 6.56 -51.93 -0.34 0.95 16 8 C -0.10 -1.24 6.07 -25.01 -0.15 -1.39 16 9 C 0.07 0.73 2.63 -66.57 -0.18 0.55 16 10 H 0.05 0.57 8.05 -51.93 -0.42 0.16 16 11 C -0.10 -0.99 5.68 -26.73 -0.15 -1.14 16 12 C -0.12 -0.99 5.94 -26.49 -0.16 -1.15 16 13 C -0.11 -0.99 6.06 -26.49 -0.16 -1.15 16 14 C 0.06 0.61 5.85 -4.23 -0.02 0.58 16 15 N -0.53 -6.41 4.65 -225.05 -1.05 -7.46 16 16 C 0.07 0.89 6.31 -3.18 -0.02 0.87 16 17 C 0.08 1.39 4.19 -70.13 -0.29 1.10 16 18 C 0.16 3.41 6.39 -2.98 -0.02 3.39 16 19 N -0.61 -14.69 3.70 -178.06 -0.66 -15.35 16 20 C -0.23 -6.07 10.70 -15.07 -0.16 -6.23 16 21 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 22 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 23 N -0.92 -26.20 11.38 55.49 0.63 -25.57 16 24 Si 0.91 21.47 29.55 -169.99 -5.02 16.45 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 28 C 0.11 2.10 8.44 -2.97 -0.03 2.07 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 1.08 6.54 -51.93 -0.34 0.74 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 1.30 6.17 -51.93 -0.32 0.97 16 33 H 0.07 1.16 7.51 -51.93 -0.39 0.77 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.10 1.38 6.80 -51.93 -0.35 1.02 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.03 0.33 8.04 -51.93 -0.42 -0.09 16 44 H 0.08 1.14 7.71 -51.93 -0.40 0.74 16 45 H 0.05 0.60 8.05 -51.92 -0.42 0.19 16 46 H 0.11 1.80 5.72 -51.93 -0.30 1.50 16 47 H 0.04 0.85 5.38 -51.92 -0.28 0.57 16 48 H 0.08 1.87 7.15 -51.93 -0.37 1.49 16 49 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 50 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 51 H 0.04 0.71 7.05 -51.93 -0.37 0.34 16 LS Contribution 382.81 15.07 5.77 5.77 Total: -1.00 -30.21 382.81 -10.99 -41.20 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -8.91 Total: 1.63 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: -1.38 Total: 3.48 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: -1.53 Total: -58.45 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.08 Total: -10.07 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.21 -10.99 -41.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950089574.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.529 kcal (2) G-P(sol) polarization free energy of solvation -30.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.81 seconds