Wall clock time and date at job start Sat Apr 11 2020 00:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35615 * 117.00077 * 2 1 4 4 C 1.39140 * 119.87990 * 0.23599 * 3 2 1 5 5 C 1.36429 * 120.43518 * 180.27895 * 4 3 2 6 6 C 1.40907 * 120.18773 * 359.76202 * 5 4 3 7 7 C 1.41242 * 120.11700 * 179.97438 * 6 5 4 8 8 H 1.08000 * 119.99948 * 330.11766 * 7 6 5 9 9 C 1.39859 * 120.00056 * 150.10853 * 7 6 5 10 10 N 1.30888 * 120.00452 * 161.66515 * 9 7 6 11 11 Si 1.86806 * 119.99753 * 341.66806 * 9 7 6 12 12 H 1.48500 * 109.47028 * 95.41277 * 11 9 7 13 13 H 1.48504 * 109.47042 * 215.40890 * 11 9 7 14 14 H 1.48494 * 109.47112 * 335.41372 * 11 9 7 15 15 C 1.40611 * 119.76486 * 359.97438 * 6 5 4 16 16 C 1.38594 * 119.57278 * 359.97438 * 15 6 5 17 17 C 1.48317 * 120.09960 * 180.02562 * 16 15 6 18 18 C 1.39417 * 120.09949 * 65.00106 * 17 16 15 19 19 C 1.37981 * 120.00638 * 179.97438 * 18 17 16 20 20 C 1.38411 * 120.21128 * 0.29491 * 19 18 17 21 21 Cl 1.73604 * 119.90069 * 179.70760 * 20 19 18 22 22 C 1.38799 * 120.19533 * 359.44625 * 20 19 18 23 23 O 1.35991 * 120.00182 * 180.27783 * 22 20 19 24 24 C 1.38686 * 119.98972 * 0.53305 * 22 20 19 25 25 F 1.35105 * 120.10557 * 179.72314 * 24 22 20 26 26 H 1.09002 * 109.47122 * 299.99623 * 1 2 3 27 27 H 1.08997 * 109.47119 * 60.00177 * 1 2 3 28 28 H 1.09001 * 109.46807 * 180.02562 * 1 2 3 29 29 H 1.08000 * 119.78550 * 359.97438 * 4 3 2 30 30 H 1.08000 * 119.90280 * 179.74306 * 5 4 3 31 31 H 0.97004 * 120.00528 * 180.02562 * 10 9 7 32 32 H 1.08002 * 120.21863 * 180.02562 * 15 6 5 33 33 H 1.07997 * 119.99514 * 359.97181 * 18 17 16 34 34 H 1.08004 * 119.89478 * 180.02562 * 19 18 17 35 35 H 0.96700 * 113.99891 * 270.25237 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2083 0.0000 4 6 1.2845 2.3737 0.0050 5 6 1.8920 3.5952 -0.0007 6 6 3.2981 3.6872 -0.0066 7 6 3.9255 4.9526 -0.0130 8 1 3.4369 5.7952 -0.4797 9 6 5.1793 5.1145 0.5851 10 7 5.9190 6.1515 0.2842 11 14 5.7984 3.8505 1.8134 12 1 6.6620 2.8642 1.1160 13 1 6.5830 4.5333 2.8734 14 1 4.6423 3.1494 2.4273 15 6 4.0743 2.5148 -0.0061 16 6 3.4469 1.2790 0.0008 17 6 4.2543 0.0348 0.0020 18 6 5.0668 -0.2703 1.0930 19 6 5.8167 -1.4285 1.0923 20 6 5.7703 -2.2876 0.0081 21 17 6.7230 -3.7389 0.0125 22 6 4.9603 -1.9950 -1.0803 23 8 4.9134 -2.8446 -2.1411 24 6 4.2028 -0.8333 -1.0882 25 9 3.4177 -0.5433 -2.1489 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 0.2063 2.3109 0.0084 30 1 1.2935 4.4942 -0.0010 31 1 6.7888 6.2636 0.6987 32 1 5.1525 2.5767 -0.0102 33 1 5.1093 0.3999 1.9387 34 1 6.4452 -1.6634 1.9386 35 1 5.5700 -2.6559 -2.8255 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244632091.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:39:47 Heat of formation + Delta-G solvation = -85.463626 kcal Electronic energy + Delta-G solvation = -24629.800798 eV Core-core repulsion = 20726.583054 eV Total energy + Delta-G solvation = -3903.217744 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 322.056 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -48.54806 -39.72266 -38.95767 -37.01536 -36.62095 -36.32742 -33.49011 -31.97067 -30.01898 -29.72350 -28.48798 -27.00085 -24.62249 -23.33957 -22.68968 -21.27439 -20.36211 -18.46117 -17.53687 -17.38555 -17.26539 -16.67687 -15.84342 -15.47770 -15.08748 -15.02607 -14.94148 -14.62251 -14.19366 -13.54492 -13.45808 -13.22608 -12.98753 -12.90713 -12.63230 -12.41019 -12.04415 -11.85847 -11.57265 -11.22448 -11.17468 -11.08702 -10.86523 -10.77533 -10.39614 -10.26295 -10.04848 -9.68548 -9.20157 -8.69447 -8.59484 -7.87362 -7.30401 -6.99532 -4.48334 0.92439 1.08932 1.98428 2.27699 2.48486 3.01177 3.11628 3.21347 3.41002 3.87956 3.90080 4.06804 4.32331 4.47513 4.89876 4.90688 5.10993 5.23594 5.43374 5.47919 5.55638 5.68045 5.83261 5.84336 5.90684 6.07080 6.15189 6.34127 6.41635 6.57362 6.66713 6.80064 7.01297 7.19895 7.36482 7.45692 7.60888 7.77131 8.17214 8.28222 8.54127 8.71883 10.03544 Molecular weight = 322.06amu Principal moments of inertia in cm(-1) A = 0.012480 B = 0.005363 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.084290 B = 5220.176650 C = 6692.869751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.324 6.324 3 C 0.024 3.976 4 C -0.159 4.159 5 C -0.160 4.160 6 C 0.070 3.930 7 C -0.448 4.448 8 H 0.092 0.908 9 C 0.084 3.916 10 N -0.809 5.809 11 Si 0.897 3.103 12 H -0.266 1.266 13 H -0.288 1.288 14 H -0.242 1.242 15 C -0.188 4.188 16 C -0.055 4.055 17 C -0.021 4.021 18 C -0.082 4.082 19 C -0.109 4.109 20 C -0.047 4.047 21 Cl -0.058 7.058 22 C 0.076 3.924 23 O -0.477 6.477 24 C 0.109 3.891 25 F -0.116 7.116 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.084 0.916 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.285 0.715 32 H 0.112 0.888 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.445 -13.500 0.907 13.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.239 6.239 3 C -0.020 4.020 4 C -0.178 4.178 5 C -0.180 4.180 6 C 0.067 3.933 7 C -0.477 4.477 8 H 0.110 0.890 9 C -0.134 4.134 10 N -0.434 5.434 11 Si 0.723 3.277 12 H -0.192 1.192 13 H -0.215 1.215 14 H -0.165 1.165 15 C -0.207 4.207 16 C -0.055 4.055 17 C -0.022 4.022 18 C -0.100 4.100 19 C -0.127 4.127 20 C -0.075 4.075 21 Cl -0.029 7.029 22 C 0.029 3.971 23 O -0.287 6.287 24 C 0.089 3.911 25 F -0.094 7.094 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.103 0.897 29 H 0.125 0.875 30 H 0.125 0.875 31 H 0.095 0.905 32 H 0.129 0.871 33 H 0.160 0.840 34 H 0.160 0.840 35 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -0.554 -13.861 1.168 13.921 hybrid contribution 0.461 -0.065 0.013 0.466 sum -0.093 -13.926 1.181 13.976 Atomic orbital electron populations 1.22772 0.80393 1.02200 1.00486 1.85873 1.19567 1.27806 1.90611 1.18423 0.90324 0.83573 1.09658 1.20513 0.98055 0.92609 1.06615 1.20760 0.94562 0.95588 1.07044 1.17593 0.91515 0.92733 0.91421 1.19346 1.00832 0.95502 1.32026 0.89035 1.26094 0.95177 0.95824 0.96299 1.69714 1.09877 1.28007 1.35766 0.86518 0.80089 0.80643 0.80421 1.19217 1.21530 1.16522 1.20902 0.98317 0.90445 1.11046 1.17425 0.89048 0.90874 1.08189 1.18965 0.96518 0.94461 0.92229 1.21171 0.94833 0.96186 0.97856 1.20907 1.00630 0.93689 0.97511 1.21018 0.98042 0.91397 0.97018 1.98353 1.70331 1.35762 1.98480 1.17902 0.98867 0.90263 0.90081 1.84901 1.60403 1.52823 1.30525 1.17860 0.93958 0.93223 0.86096 1.91523 1.71488 1.92986 1.53390 0.93675 0.93608 0.89721 0.87497 0.87467 0.90462 0.87082 0.83999 0.84017 0.75444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 9.80 101.05 0.99 1.52 16 2 O -0.32 -6.20 9.61 -18.54 -0.18 -6.37 16 3 C 0.02 0.50 6.51 -38.44 -0.25 0.25 16 4 C -0.16 -3.21 8.95 -39.90 -0.36 -3.56 16 5 C -0.16 -3.51 9.72 -39.22 -0.38 -3.90 16 6 C 0.07 1.70 5.10 -106.85 -0.55 1.15 16 7 C -0.45 -11.62 9.55 -37.83 -0.36 -11.98 16 8 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 9 C 0.08 2.14 5.40 -17.35 -0.09 2.04 16 10 N -0.81 -20.98 13.93 55.54 0.77 -20.21 16 11 Si 0.90 19.55 24.52 -169.99 -4.17 15.38 16 12 H -0.27 -5.56 6.70 56.52 0.38 -5.18 16 13 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 14 H -0.24 -5.28 6.87 56.52 0.39 -4.89 16 15 C -0.19 -4.34 6.84 -38.56 -0.26 -4.61 16 16 C -0.05 -1.18 5.01 -104.81 -0.53 -1.70 16 17 C -0.02 -0.39 4.94 -104.86 -0.52 -0.91 16 18 C -0.08 -1.34 9.73 -39.24 -0.38 -1.72 16 19 C -0.11 -1.49 9.81 -39.61 -0.39 -1.88 16 20 C -0.05 -0.67 6.33 -39.31 -0.25 -0.92 16 21 Cl -0.06 -0.71 28.49 -51.86 -1.48 -2.18 16 22 C 0.08 1.17 6.70 -39.21 -0.26 0.91 16 23 O -0.48 -6.51 12.81 -19.71 -0.25 -6.76 16 24 C 0.11 1.97 6.94 -38.96 -0.27 1.70 16 25 F -0.12 -2.26 16.45 2.25 0.04 -2.22 16 26 H 0.04 0.60 7.64 -51.93 -0.40 0.20 16 27 H 0.05 0.62 7.66 -51.93 -0.40 0.22 16 28 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.11 1.82 6.26 -52.49 -0.33 1.50 16 30 H 0.11 2.18 8.06 -52.49 -0.42 1.76 16 31 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 32 H 0.11 2.57 4.74 -52.49 -0.25 2.32 16 33 H 0.14 2.19 8.06 -52.49 -0.42 1.77 16 34 H 0.14 1.53 8.06 -52.48 -0.42 1.11 16 35 H 0.39 3.54 9.06 45.56 0.41 3.95 16 LS Contribution 321.85 15.07 4.85 4.85 Total: -1.00 -28.54 321.85 -6.52 -35.06 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -2.24 Total: 6.05 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: -3.86 Total: -23.59 kcal Atomic # 7 Polarization: -20.98 SS G_CDS: 0.77 Total: -20.21 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -0.43 Total: -13.14 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.04 Total: -2.22 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.17 Total: 15.38 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.48 Total: -2.18 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.54 -6.52 -35.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244632091.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.404 kcal (2) G-P(sol) polarization free energy of solvation -28.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds