Wall clock time and date at job start Sat Apr 11 2020 00:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35615 * 117.00077 * 2 1 4 4 C 1.39140 * 119.87990 * 0.23599 * 3 2 1 5 5 C 1.36429 * 120.43518 * 180.27895 * 4 3 2 6 6 C 1.40907 * 120.18773 * 359.76202 * 5 4 3 7 7 C 1.41242 * 120.11700 * 179.97438 * 6 5 4 8 8 H 1.08000 * 119.99948 * 330.11766 * 7 6 5 9 9 C 1.39859 * 120.00056 * 150.10853 * 7 6 5 10 10 N 1.30888 * 120.00452 * 161.66515 * 9 7 6 11 11 Si 1.86806 * 119.99753 * 341.66806 * 9 7 6 12 12 H 1.48500 * 109.47028 * 95.41277 * 11 9 7 13 13 H 1.48504 * 109.47042 * 215.40890 * 11 9 7 14 14 H 1.48494 * 109.47112 * 335.41372 * 11 9 7 15 15 C 1.40611 * 119.76486 * 359.97438 * 6 5 4 16 16 C 1.38594 * 119.57278 * 359.97438 * 15 6 5 17 17 C 1.48317 * 120.09960 * 180.02562 * 16 15 6 18 18 C 1.39417 * 120.09949 * 65.00106 * 17 16 15 19 19 C 1.37981 * 120.00638 * 179.97438 * 18 17 16 20 20 C 1.38411 * 120.21128 * 0.29491 * 19 18 17 21 21 Cl 1.73604 * 119.90069 * 179.70760 * 20 19 18 22 22 C 1.38799 * 120.19533 * 359.44625 * 20 19 18 23 23 O 1.35991 * 120.00182 * 180.27783 * 22 20 19 24 24 C 1.38686 * 119.98972 * 0.53305 * 22 20 19 25 25 F 1.35105 * 120.10557 * 179.72314 * 24 22 20 26 26 H 1.09002 * 109.47122 * 299.99623 * 1 2 3 27 27 H 1.08997 * 109.47119 * 60.00177 * 1 2 3 28 28 H 1.09001 * 109.46807 * 180.02562 * 1 2 3 29 29 H 1.08000 * 119.78550 * 359.97438 * 4 3 2 30 30 H 1.08000 * 119.90280 * 179.74306 * 5 4 3 31 31 H 0.97004 * 120.00528 * 180.02562 * 10 9 7 32 32 H 1.08002 * 120.21863 * 180.02562 * 15 6 5 33 33 H 1.07997 * 119.99514 * 359.97181 * 18 17 16 34 34 H 1.08004 * 119.89478 * 180.02562 * 19 18 17 35 35 H 0.96700 * 113.99891 * 270.25237 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2083 0.0000 4 6 1.2845 2.3737 0.0050 5 6 1.8920 3.5952 -0.0007 6 6 3.2981 3.6872 -0.0066 7 6 3.9255 4.9526 -0.0130 8 1 3.4369 5.7952 -0.4797 9 6 5.1793 5.1145 0.5851 10 7 5.9190 6.1515 0.2842 11 14 5.7984 3.8505 1.8134 12 1 6.6620 2.8642 1.1160 13 1 6.5830 4.5333 2.8734 14 1 4.6423 3.1494 2.4273 15 6 4.0743 2.5148 -0.0061 16 6 3.4469 1.2790 0.0008 17 6 4.2543 0.0348 0.0020 18 6 5.0668 -0.2703 1.0930 19 6 5.8167 -1.4285 1.0923 20 6 5.7703 -2.2876 0.0081 21 17 6.7230 -3.7389 0.0125 22 6 4.9603 -1.9950 -1.0803 23 8 4.9134 -2.8446 -2.1411 24 6 4.2028 -0.8333 -1.0882 25 9 3.4177 -0.5433 -2.1489 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 0.2063 2.3109 0.0084 30 1 1.2935 4.4942 -0.0010 31 1 6.7888 6.2636 0.6987 32 1 5.1525 2.5767 -0.0102 33 1 5.1093 0.3999 1.9387 34 1 6.4452 -1.6634 1.9386 35 1 5.5700 -2.6559 -2.8255 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244632091.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:39:45 Heat of formation + Delta-G solvation = -102.982786 kcal Electronic energy + Delta-G solvation = -24630.560486 eV Core-core repulsion = 20726.583054 eV Total energy + Delta-G solvation = -3903.977432 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 322.056 amu Computer time = 2.46 seconds Orbital eigenvalues (eV) -49.93559 -41.08878 -40.33516 -38.41445 -37.85159 -37.52723 -35.28680 -33.42320 -31.75224 -30.94919 -29.86995 -28.35387 -26.34913 -24.72545 -23.90731 -22.87332 -21.91979 -19.76859 -19.23079 -18.78455 -18.60857 -17.95861 -17.17753 -17.14785 -16.56839 -16.37512 -16.25912 -16.02687 -15.52493 -15.00408 -14.90033 -14.78090 -14.60625 -14.25714 -13.98881 -13.80636 -13.51141 -13.17389 -12.98433 -12.73548 -12.53013 -12.41457 -12.26020 -12.04453 -11.98222 -11.78910 -11.66950 -11.34366 -10.96732 -10.01578 -9.83375 -9.45222 -9.00064 -8.86063 -6.39981 -0.31403 -0.11534 0.61462 0.74894 0.89742 1.26016 1.38738 1.49064 2.13238 2.19547 2.52292 2.66764 2.76137 3.26225 3.37975 3.54565 3.75482 3.95218 4.11699 4.25497 4.34755 4.46731 4.51923 4.59043 4.68642 4.74621 4.80771 4.87567 4.90530 5.05625 5.14614 5.29732 5.44316 5.47898 5.66129 5.81990 6.03252 6.29237 6.51718 6.55435 6.78409 6.87456 8.22751 Molecular weight = 322.06amu Principal moments of inertia in cm(-1) A = 0.012480 B = 0.005363 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.084290 B = 5220.176650 C = 6692.869751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.335 6.335 3 C 0.036 3.964 4 C -0.158 4.158 5 C -0.168 4.168 6 C 0.049 3.951 7 C -0.483 4.483 8 H 0.058 0.942 9 C 0.047 3.953 10 N -0.854 5.854 11 Si 0.947 3.053 12 H -0.252 1.252 13 H -0.277 1.277 14 H -0.245 1.245 15 C -0.192 4.192 16 C -0.065 4.065 17 C -0.047 4.047 18 C -0.090 4.090 19 C -0.091 4.091 20 C -0.046 4.046 21 Cl -0.034 7.034 22 C 0.085 3.915 23 O -0.482 6.482 24 C 0.085 3.915 25 F -0.133 7.133 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.113 0.887 29 H 0.142 0.858 30 H 0.115 0.885 31 H 0.292 0.708 32 H 0.107 0.893 33 H 0.148 0.852 34 H 0.178 0.822 35 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.462 -17.081 1.967 17.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.250 6.250 3 C -0.009 4.009 4 C -0.177 4.177 5 C -0.187 4.187 6 C 0.047 3.953 7 C -0.513 4.513 8 H 0.076 0.924 9 C -0.166 4.166 10 N -0.481 5.481 11 Si 0.770 3.230 12 H -0.177 1.177 13 H -0.204 1.204 14 H -0.168 1.168 15 C -0.212 4.212 16 C -0.065 4.065 17 C -0.048 4.048 18 C -0.108 4.108 19 C -0.109 4.109 20 C -0.073 4.073 21 Cl -0.005 7.005 22 C 0.038 3.962 23 O -0.295 6.295 24 C 0.065 3.935 25 F -0.111 7.111 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.131 0.869 29 H 0.160 0.840 30 H 0.133 0.867 31 H 0.102 0.898 32 H 0.124 0.876 33 H 0.166 0.834 34 H 0.195 0.805 35 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -0.577 -17.457 2.207 17.605 hybrid contribution 0.296 0.757 -0.406 0.909 sum -0.281 -16.700 1.801 16.799 Atomic orbital electron populations 1.23153 0.77720 1.04578 1.01529 1.85882 1.22310 1.26704 1.90124 1.18701 0.90615 0.84530 1.07007 1.20830 0.99895 0.91548 1.05397 1.20955 0.93974 0.96939 1.06830 1.17719 0.92713 0.92427 0.92442 1.19312 1.02066 0.95559 1.34398 0.92364 1.26761 0.95037 0.97500 0.97343 1.69753 1.10776 1.29939 1.37597 0.85759 0.79731 0.78898 0.78651 1.17684 1.20369 1.16780 1.20908 0.98158 0.90877 1.11230 1.17686 0.90014 0.91530 1.07311 1.18960 0.97930 0.94011 0.93888 1.21302 0.94827 0.97334 0.97327 1.21235 0.99445 0.92099 0.98113 1.21128 0.97557 0.92155 0.96470 1.98370 1.69482 1.34261 1.98399 1.17873 0.98065 0.89317 0.90926 1.84843 1.61570 1.52207 1.30846 1.18055 0.95165 0.94481 0.85819 1.91468 1.72215 1.93293 1.54120 0.92245 0.92797 0.86895 0.84044 0.86671 0.89778 0.87553 0.83432 0.80494 0.73020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 9.80 113.37 1.11 1.74 16 2 O -0.34 -12.05 9.61 -89.26 -0.86 -12.91 16 3 C 0.04 1.46 6.51 23.01 0.15 1.61 16 4 C -0.16 -6.14 8.95 22.06 0.20 -5.95 16 5 C -0.17 -7.42 9.72 22.50 0.22 -7.20 16 6 C 0.05 2.45 5.10 -21.31 -0.11 2.35 16 7 C -0.48 -26.55 9.55 23.40 0.22 -26.33 16 8 H 0.06 3.44 8.06 -2.91 -0.02 3.41 16 9 C 0.05 2.49 5.40 85.23 0.46 2.95 16 10 N -0.85 -46.40 13.93 21.81 0.30 -46.10 16 11 Si 0.95 40.68 24.52 68.60 1.68 42.36 16 12 H -0.25 -10.10 6.70 99.48 0.67 -9.43 16 13 H -0.28 -11.25 7.11 99.48 0.71 -10.54 16 14 H -0.24 -10.45 6.87 99.48 0.68 -9.77 16 15 C -0.19 -8.98 6.84 22.93 0.16 -8.83 16 16 C -0.06 -2.74 5.01 -19.98 -0.10 -2.84 16 17 C -0.05 -1.71 4.94 -20.02 -0.10 -1.81 16 18 C -0.09 -2.70 9.73 22.49 0.22 -2.48 16 19 C -0.09 -2.15 9.81 22.25 0.22 -1.94 16 20 C -0.05 -1.13 6.33 22.45 0.14 -0.99 16 21 Cl -0.03 -0.70 28.49 -2.72 -0.08 -0.78 16 22 C 0.09 2.44 6.70 22.51 0.15 2.59 16 23 O -0.48 -11.91 12.81 -93.45 -1.20 -13.10 16 24 C 0.08 2.96 6.94 22.67 0.16 3.12 16 25 F -0.13 -5.10 16.45 44.97 0.74 -4.36 16 26 H 0.06 1.35 7.64 -2.39 -0.02 1.33 16 27 H 0.05 1.29 7.66 -2.39 -0.02 1.27 16 28 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.14 4.42 6.26 -2.91 -0.02 4.40 16 30 H 0.12 4.78 8.06 -2.91 -0.02 4.76 16 31 H 0.29 14.28 8.30 -92.71 -0.77 13.51 16 32 H 0.11 4.97 4.74 -2.91 -0.01 4.96 16 33 H 0.15 4.21 8.06 -2.91 -0.02 4.18 16 34 H 0.18 2.93 8.06 -2.91 -0.02 2.91 16 35 H 0.41 6.37 9.06 -74.06 -0.67 5.70 16 Total: -1.00 -64.12 321.85 4.13 -59.99 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 0.43 Total: 18.90 kcal Atomic # 6 Polarization: -47.10 SS G_CDS: 3.10 Total: -44.00 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: 0.30 Total: -46.10 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -2.06 Total: -26.01 kcal Atomic # 9 Polarization: -5.10 SS G_CDS: 0.74 Total: -4.36 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 1.68 Total: 42.36 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -0.08 Total: -0.78 kcal Total: -64.12 4.13 -59.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244632091.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.992 kcal (2) G-P(sol) polarization free energy of solvation -64.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.46 seconds