Wall clock time and date at job start Sat Apr 11 2020 00:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81392 * 1 3 3 C 1.76200 * 102.99930 * 2 1 4 4 C 1.39052 * 119.99104 * 359.97438 * 3 2 1 5 5 C 1.38175 * 120.20101 * 180.02562 * 4 3 2 6 6 C 1.38274 * 120.18235 * 0.23615 * 5 4 3 7 7 F 1.35105 * 120.00907 * 179.72457 * 6 5 4 8 8 C 1.39604 * 119.98578 * 359.51105 * 6 5 4 9 9 C 1.48259 * 120.10460 * 180.25221 * 8 6 5 10 10 C 1.39308 * 120.13534 * 245.25879 * 9 8 6 11 11 C 1.37975 * 119.96536 * 180.02562 * 10 9 8 12 12 C 1.38672 * 120.24748 * 359.97438 * 11 10 9 13 13 F 1.35099 * 119.86323 * 179.97438 * 12 11 10 14 14 C 1.38338 * 120.27400 * 0.02562 * 12 11 10 15 15 C 1.38700 * 120.02532 * 359.71498 * 14 12 11 16 16 O 1.35667 * 120.12529 * 180.27720 * 15 14 12 17 17 C 1.34820 * 116.99884 * 354.40760 * 16 15 14 18 18 H 1.08001 * 119.99731 * 5.05810 * 17 16 15 19 19 C 1.38646 * 120.00134 * 185.06176 * 17 16 15 20 20 N 1.31555 * 119.99813 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99867 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46940 * 59.99726 * 21 19 17 23 23 H 1.48494 * 109.46818 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47031 * 300.00091 * 21 19 17 25 25 C 1.38691 * 119.99474 * 180.02562 * 3 2 1 26 26 H 1.09000 * 109.47345 * 60.00494 * 1 2 3 27 27 H 1.09004 * 109.47053 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47798 * 300.00166 * 1 2 3 29 29 H 1.07999 * 119.89967 * 0.02562 * 4 3 2 30 30 H 1.07998 * 119.90952 * 179.97438 * 5 4 3 31 31 H 1.07989 * 120.01675 * 0.02562 * 10 9 8 32 32 H 1.08002 * 119.87364 * 180.02562 * 11 10 9 33 33 H 1.08000 * 119.98502 * 179.97438 * 14 12 11 34 34 H 0.97001 * 119.99467 * 179.97438 * 20 19 17 35 35 H 1.07999 * 120.09330 * 359.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1931 2.6650 -0.0005 5 6 1.4990 4.0125 -0.0011 6 6 2.8185 4.4258 -0.0060 7 9 3.1136 5.7442 -0.0121 8 6 3.8458 3.4805 -0.0001 9 6 5.2615 3.9208 0.0002 10 6 6.0809 3.6422 -1.0914 11 6 7.3980 4.0531 -1.0871 12 6 7.9107 4.7439 0.0005 13 9 9.2017 5.1421 -0.0033 14 6 7.1060 5.0259 1.0899 15 6 5.7789 4.6229 1.0953 16 8 4.9864 4.9034 2.1601 17 6 5.5773 5.4736 3.2294 18 1 6.6172 5.7614 3.1822 19 6 4.8500 5.6906 4.3896 20 7 3.5831 5.3405 4.4470 21 14 5.6689 6.4801 5.8714 22 1 6.1658 7.8298 5.5016 23 1 4.6836 6.6001 6.9759 24 1 6.8084 5.6374 6.3146 25 6 3.5366 2.1222 -0.0005 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3635 0.5139 0.8900 29 1 0.1609 2.3473 -0.0005 30 1 0.7053 4.7449 -0.0019 31 1 5.6854 3.1049 -1.9405 32 1 8.0318 3.8367 -1.9344 33 1 7.5103 5.5638 1.9347 34 1 3.0744 5.4921 5.2589 35 1 4.3276 1.3869 -0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245746712.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:40:41 Heat of formation + Delta-G solvation = -67.642199 kcal Electronic energy + Delta-G solvation = -24149.845316 eV Core-core repulsion = 20261.816863 eV Total energy + Delta-G solvation = -3888.028453 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 322.058 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.35091 -48.21007 -39.41272 -38.19694 -36.36941 -32.49229 -32.16747 -30.36409 -29.57404 -29.23458 -27.79463 -25.51927 -23.18812 -22.54711 -21.80584 -20.90722 -18.34400 -17.87130 -17.19505 -16.91241 -16.06961 -15.58989 -15.32001 -15.14596 -15.02845 -14.80860 -14.66821 -14.30398 -13.83572 -13.79404 -13.60076 -13.38446 -13.29387 -12.91183 -12.80214 -12.52246 -12.23043 -12.11451 -11.79273 -11.54737 -11.23658 -10.83038 -10.81665 -10.69653 -10.54333 -10.22402 -9.68014 -9.20709 -8.96678 -8.77832 -8.09116 -7.42411 -7.16995 -6.58203 -4.17250 1.27678 1.46736 1.56100 1.88871 2.10389 2.44495 3.07742 3.08865 3.11348 3.78566 3.86010 4.23643 4.69828 4.79432 4.93358 4.95607 4.95674 4.97191 5.07948 5.14579 5.24402 5.50114 5.53460 5.63260 5.68590 5.94470 6.05176 6.11935 6.26253 6.38282 6.40952 6.57227 6.68544 6.78946 6.86856 6.97370 7.15656 7.23611 7.56777 7.83758 8.85481 9.48806 10.57554 Molecular weight = 322.06amu Principal moments of inertia in cm(-1) A = 0.010051 B = 0.005150 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2785.161167 B = 5435.821089 C = 7160.748135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 S -0.123 6.123 3 C -0.101 4.101 4 C -0.111 4.111 5 C -0.137 4.137 6 C 0.128 3.872 7 F -0.127 7.127 8 C -0.021 4.021 9 C -0.153 4.153 10 C -0.026 4.026 11 C -0.251 4.251 12 C 0.150 3.850 13 F -0.150 7.150 14 C -0.271 4.271 15 C 0.192 3.808 16 O -0.149 6.149 17 C -0.397 4.397 18 H 0.094 0.906 19 C 0.046 3.954 20 N -0.849 5.849 21 Si 0.942 3.058 22 H -0.268 1.268 23 H -0.276 1.276 24 H -0.268 1.268 25 C -0.060 4.060 26 H 0.082 0.918 27 H 0.105 0.895 28 H 0.084 0.916 29 H 0.127 0.873 30 H 0.135 0.865 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.142 0.858 34 H 0.273 0.727 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.493 -6.835 -8.738 11.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 S 0.118 5.882 3 C -0.214 4.214 4 C -0.134 4.134 5 C -0.157 4.157 6 C 0.107 3.893 7 F -0.105 7.105 8 C -0.024 4.024 9 C -0.154 4.154 10 C -0.044 4.044 11 C -0.271 4.271 12 C 0.130 3.870 13 F -0.129 7.129 14 C -0.291 4.291 15 C 0.135 3.865 16 O -0.050 6.050 17 C -0.473 4.473 18 H 0.112 0.888 19 C -0.160 4.160 20 N -0.481 5.481 21 Si 0.766 3.234 22 H -0.193 1.193 23 H -0.201 1.201 24 H -0.193 1.193 25 C -0.084 4.084 26 H 0.101 0.899 27 H 0.123 0.877 28 H 0.103 0.897 29 H 0.145 0.855 30 H 0.152 0.848 31 H 0.143 0.857 32 H 0.140 0.860 33 H 0.159 0.841 34 H 0.083 0.917 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.271 -7.840 -8.482 12.315 hybrid contribution -0.099 1.943 0.915 2.150 sum -4.369 -5.897 -7.567 10.542 Atomic orbital electron populations 1.23643 0.95200 1.06760 1.05657 1.85353 1.05969 1.03533 1.93343 1.21441 0.96371 0.96152 1.07394 1.20847 0.98086 0.92007 1.02509 1.20859 0.94900 0.96402 1.03544 1.17736 0.92803 0.78065 1.00711 1.91520 1.94151 1.31572 1.93242 1.18421 0.91889 0.91856 1.00225 1.17603 0.92658 1.09094 0.96088 1.20491 0.91927 0.96266 0.95711 1.20429 0.96985 1.09974 0.99680 1.17530 0.77754 0.96484 0.95203 1.91421 1.35627 1.88945 1.96889 1.20973 0.94915 1.12267 1.00948 1.18927 0.88562 0.90536 0.88436 1.83991 1.33910 1.66693 1.20414 1.21358 0.97081 1.39535 0.89310 0.88834 1.25315 0.95641 0.96893 0.98199 1.70038 1.07146 1.42411 1.28529 0.85764 0.78756 0.79562 0.79352 1.19286 1.20109 1.19277 1.20637 0.94218 0.94328 0.99172 0.89877 0.87678 0.89689 0.85532 0.84762 0.85666 0.85982 0.84070 0.91705 0.84799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.14 101.05 0.92 -0.35 16 2 S -0.12 -1.57 22.56 -107.50 -2.43 -4.00 16 3 C -0.10 -1.58 6.10 -39.11 -0.24 -1.82 16 4 C -0.11 -1.64 9.36 -39.30 -0.37 -2.01 16 5 C -0.14 -2.28 10.01 -39.59 -0.40 -2.68 16 6 C 0.13 2.57 6.96 -39.06 -0.27 2.30 16 7 F -0.13 -2.80 16.66 2.25 0.04 -2.77 16 8 C -0.02 -0.42 4.94 -104.87 -0.52 -0.94 16 9 C -0.15 -3.16 5.02 -104.72 -0.53 -3.69 16 10 C -0.03 -0.45 9.73 -39.28 -0.38 -0.83 16 11 C -0.25 -4.38 10.01 -39.52 -0.40 -4.78 16 12 C 0.15 2.94 7.29 -39.38 -0.29 2.65 16 13 F -0.15 -2.82 17.26 2.25 0.04 -2.78 16 14 C -0.27 -5.98 9.14 -39.37 -0.36 -6.34 16 15 C 0.19 4.57 6.45 -38.75 -0.25 4.32 16 16 O -0.15 -4.11 8.96 0.33 0.00 -4.10 16 17 C -0.40 -10.81 9.49 30.88 0.29 -10.52 16 18 H 0.09 2.37 5.21 -52.49 -0.27 2.10 16 19 C 0.05 1.23 5.49 -17.52 -0.10 1.13 16 20 N -0.85 -24.08 13.67 55.48 0.76 -23.32 16 21 Si 0.94 20.11 29.55 -169.99 -5.02 15.08 16 22 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 23 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 24 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 25 C -0.06 -1.05 9.47 -39.02 -0.37 -1.42 16 26 H 0.08 0.64 7.74 -51.92 -0.40 0.24 16 27 H 0.10 0.72 8.14 -51.92 -0.42 0.30 16 28 H 0.08 0.74 7.74 -51.92 -0.40 0.34 16 29 H 0.13 1.46 5.86 -52.49 -0.31 1.15 16 30 H 0.13 1.92 8.06 -52.49 -0.42 1.50 16 31 H 0.13 1.79 8.06 -52.49 -0.42 1.36 16 32 H 0.12 1.79 8.06 -52.49 -0.42 1.36 16 33 H 0.14 3.13 5.64 -52.49 -0.30 2.83 16 34 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.13 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 329.44 15.07 4.96 4.96 Total: -1.00 -30.03 329.44 -7.82 -37.85 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -2.93 Total: 4.04 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: -3.24 Total: -24.96 kcal Atomic # 7 Polarization: -24.08 SS G_CDS: 0.76 Total: -23.32 kcal Atomic # 8 Polarization: -4.11 SS G_CDS: 0.00 Total: -4.10 kcal Atomic # 9 Polarization: -5.63 SS G_CDS: 0.08 Total: -5.55 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.08 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.43 Total: -4.00 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.03 -7.82 -37.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245746712.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.797 kcal (2) G-P(sol) polarization free energy of solvation -30.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds