Wall clock time and date at job start Sat Apr 11 2020 00:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81392 * 1 3 3 C 1.76200 * 102.99930 * 2 1 4 4 C 1.39052 * 119.99104 * 359.97438 * 3 2 1 5 5 C 1.38175 * 120.20101 * 180.02562 * 4 3 2 6 6 C 1.38274 * 120.18235 * 0.23615 * 5 4 3 7 7 F 1.35105 * 120.00907 * 179.72457 * 6 5 4 8 8 C 1.39604 * 119.98578 * 359.51105 * 6 5 4 9 9 C 1.48259 * 120.10460 * 180.25221 * 8 6 5 10 10 C 1.39308 * 120.13534 * 245.25879 * 9 8 6 11 11 C 1.37975 * 119.96536 * 180.02562 * 10 9 8 12 12 C 1.38672 * 120.24748 * 359.97438 * 11 10 9 13 13 F 1.35099 * 119.86323 * 179.97438 * 12 11 10 14 14 C 1.38338 * 120.27400 * 0.02562 * 12 11 10 15 15 C 1.38700 * 120.02532 * 359.71498 * 14 12 11 16 16 O 1.35667 * 120.12529 * 180.27720 * 15 14 12 17 17 C 1.34820 * 116.99884 * 354.40760 * 16 15 14 18 18 H 1.08001 * 119.99731 * 5.05810 * 17 16 15 19 19 C 1.38646 * 120.00134 * 185.06176 * 17 16 15 20 20 N 1.31555 * 119.99813 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99867 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46940 * 59.99726 * 21 19 17 23 23 H 1.48494 * 109.46818 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47031 * 300.00091 * 21 19 17 25 25 C 1.38691 * 119.99474 * 180.02562 * 3 2 1 26 26 H 1.09000 * 109.47345 * 60.00494 * 1 2 3 27 27 H 1.09004 * 109.47053 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47798 * 300.00166 * 1 2 3 29 29 H 1.07999 * 119.89967 * 0.02562 * 4 3 2 30 30 H 1.07998 * 119.90952 * 179.97438 * 5 4 3 31 31 H 1.07989 * 120.01675 * 0.02562 * 10 9 8 32 32 H 1.08002 * 119.87364 * 180.02562 * 11 10 9 33 33 H 1.08000 * 119.98502 * 179.97438 * 14 12 11 34 34 H 0.97001 * 119.99467 * 179.97438 * 20 19 17 35 35 H 1.07999 * 120.09330 * 359.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1931 2.6650 -0.0005 5 6 1.4990 4.0125 -0.0011 6 6 2.8185 4.4258 -0.0060 7 9 3.1136 5.7442 -0.0121 8 6 3.8458 3.4805 -0.0001 9 6 5.2615 3.9208 0.0002 10 6 6.0809 3.6422 -1.0914 11 6 7.3980 4.0531 -1.0871 12 6 7.9107 4.7439 0.0005 13 9 9.2017 5.1421 -0.0033 14 6 7.1060 5.0259 1.0899 15 6 5.7789 4.6229 1.0953 16 8 4.9864 4.9034 2.1601 17 6 5.5773 5.4736 3.2294 18 1 6.6172 5.7614 3.1822 19 6 4.8500 5.6906 4.3896 20 7 3.5831 5.3405 4.4470 21 14 5.6689 6.4801 5.8714 22 1 6.1658 7.8298 5.5016 23 1 4.6836 6.6001 6.9759 24 1 6.8084 5.6374 6.3146 25 6 3.5366 2.1222 -0.0005 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3635 0.5139 0.8900 29 1 0.1609 2.3473 -0.0005 30 1 0.7053 4.7449 -0.0019 31 1 5.6854 3.1049 -1.9405 32 1 8.0318 3.8367 -1.9344 33 1 7.5103 5.5638 1.9347 34 1 3.0744 5.4921 5.2589 35 1 4.3276 1.3869 -0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245746712.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:40:40 Heat of formation + Delta-G solvation = -82.884827 kcal Electronic energy + Delta-G solvation = -24150.506286 eV Core-core repulsion = 20261.816863 eV Total energy + Delta-G solvation = -3888.689423 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 322.058 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.91171 -49.77926 -41.04467 -39.62775 -38.03767 -34.38122 -33.62676 -31.67051 -31.11074 -30.30711 -29.08427 -27.43178 -24.61831 -23.96776 -23.40813 -22.39633 -20.14516 -19.44924 -18.67575 -18.24100 -17.52047 -17.21882 -16.99365 -16.62375 -16.53903 -16.37431 -16.00224 -15.71083 -15.42403 -15.24506 -15.03571 -14.76803 -14.60145 -14.28460 -14.12292 -13.72480 -13.64821 -13.43355 -13.33731 -13.02682 -12.79900 -12.40388 -12.38432 -12.19088 -12.11510 -11.53348 -11.21708 -10.85750 -10.48429 -10.17257 -9.67051 -9.08081 -8.52784 -8.28820 -6.21187 -0.13911 0.11707 0.34806 0.49654 0.57968 1.31984 1.41848 1.47131 1.50354 2.11974 2.41738 2.62082 3.01321 3.18557 3.37783 3.39332 3.60707 3.77735 3.94931 4.03465 4.16704 4.29583 4.33262 4.35186 4.40791 4.65674 4.76999 4.82395 4.89083 4.97210 5.03203 5.11106 5.19211 5.21171 5.21913 5.32949 5.48996 5.80640 5.91558 5.98696 6.89970 7.63360 8.67576 Molecular weight = 322.06amu Principal moments of inertia in cm(-1) A = 0.010051 B = 0.005150 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2785.161167 B = 5435.821089 C = 7160.748135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.132 6.132 3 C -0.101 4.101 4 C -0.103 4.103 5 C -0.137 4.137 6 C 0.087 3.913 7 F -0.151 7.151 8 C -0.044 4.044 9 C -0.155 4.155 10 C -0.018 4.018 11 C -0.220 4.220 12 C 0.142 3.858 13 F -0.144 7.144 14 C -0.287 4.287 15 C 0.162 3.838 16 O -0.194 6.194 17 C -0.423 4.423 18 H 0.098 0.902 19 C -0.009 4.009 20 N -0.903 5.903 21 Si 1.013 2.987 22 H -0.260 1.260 23 H -0.268 1.268 24 H -0.258 1.258 25 C -0.071 4.071 26 H 0.100 0.900 27 H 0.130 0.870 28 H 0.089 0.911 29 H 0.166 0.834 30 H 0.154 0.846 31 H 0.167 0.833 32 H 0.166 0.834 33 H 0.129 0.871 34 H 0.274 0.726 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.850 -8.710 -10.461 14.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.109 5.891 3 C -0.213 4.213 4 C -0.126 4.126 5 C -0.158 4.158 6 C 0.065 3.935 7 F -0.130 7.130 8 C -0.047 4.047 9 C -0.156 4.156 10 C -0.036 4.036 11 C -0.239 4.239 12 C 0.123 3.877 13 F -0.122 7.122 14 C -0.307 4.307 15 C 0.108 3.892 16 O -0.098 6.098 17 C -0.498 4.498 18 H 0.115 0.885 19 C -0.209 4.209 20 N -0.539 5.539 21 Si 0.832 3.168 22 H -0.184 1.184 23 H -0.192 1.192 24 H -0.183 1.183 25 C -0.094 4.094 26 H 0.119 0.881 27 H 0.148 0.852 28 H 0.108 0.892 29 H 0.183 0.817 30 H 0.172 0.828 31 H 0.185 0.815 32 H 0.183 0.817 33 H 0.147 0.853 34 H 0.083 0.917 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.590 -9.738 -10.258 14.871 hybrid contribution 0.029 2.302 1.125 2.563 sum -4.561 -7.436 -9.133 12.630 Atomic orbital electron populations 1.23835 0.91358 1.08804 1.06748 1.85440 1.10164 1.00711 1.92737 1.21769 0.95885 0.98393 1.05301 1.21288 0.99857 0.90902 1.00590 1.21184 0.94050 0.97977 1.02550 1.18192 0.94511 0.77269 1.03514 1.91443 1.94474 1.33264 1.93828 1.18544 0.91368 0.92959 1.01810 1.18076 0.93924 1.07797 0.95823 1.20996 0.91560 0.95408 0.95647 1.20959 0.97174 1.06373 0.99421 1.17621 0.77866 0.96995 0.95238 1.91437 1.35013 1.88931 1.96848 1.21022 0.95032 1.12844 1.01844 1.19480 0.89291 0.91642 0.88743 1.83981 1.35101 1.69258 1.21493 1.21763 0.97592 1.40307 0.90186 0.88479 1.26471 0.96213 0.97307 1.00943 1.70169 1.08885 1.45285 1.29516 0.84738 0.77949 0.78757 0.75385 1.18428 1.19210 1.18260 1.20760 0.95630 0.93400 0.99592 0.88120 0.85179 0.89211 0.81672 0.82836 0.81534 0.81664 0.85332 0.91652 0.84014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.14 113.37 1.04 -0.85 16 2 S -0.13 -3.03 22.56 -56.49 -1.27 -4.30 16 3 C -0.10 -3.00 6.10 22.57 0.14 -2.86 16 4 C -0.10 -2.85 9.36 22.45 0.21 -2.64 16 5 C -0.14 -4.56 10.01 22.26 0.22 -4.34 16 6 C 0.09 3.59 6.96 22.61 0.16 3.75 16 7 F -0.15 -7.15 16.66 44.97 0.75 -6.40 16 8 C -0.04 -1.78 4.94 -20.03 -0.10 -1.88 16 9 C -0.15 -6.50 5.02 -19.93 -0.10 -6.60 16 10 C -0.02 -0.60 9.73 22.46 0.22 -0.38 16 11 C -0.22 -7.00 10.01 22.31 0.22 -6.78 16 12 C 0.14 5.45 7.29 22.40 0.16 5.61 16 13 F -0.14 -5.20 17.26 44.97 0.78 -4.42 16 14 C -0.29 -13.15 9.14 22.40 0.20 -12.95 16 15 C 0.16 8.07 6.45 22.81 0.15 8.22 16 16 O -0.19 -11.43 8.96 -21.72 -0.19 -11.63 16 17 C -0.42 -24.52 9.49 67.92 0.64 -23.88 16 18 H 0.10 5.27 5.21 -2.91 -0.02 5.25 16 19 C -0.01 -0.53 5.49 84.83 0.47 -0.06 16 20 N -0.90 -54.15 13.67 21.61 0.30 -53.85 16 21 Si 1.01 42.81 29.55 68.60 2.03 44.84 16 22 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 23 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 24 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 25 C -0.07 -2.43 9.47 22.63 0.21 -2.21 16 26 H 0.10 1.08 7.74 -2.39 -0.02 1.06 16 27 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.09 1.20 7.74 -2.39 -0.02 1.19 16 29 H 0.17 3.18 5.86 -2.91 -0.02 3.17 16 30 H 0.15 4.32 8.06 -2.91 -0.02 4.30 16 31 H 0.17 4.10 8.06 -2.92 -0.02 4.08 16 32 H 0.17 3.92 8.06 -2.91 -0.02 3.90 16 33 H 0.13 6.07 5.64 -2.91 -0.02 6.05 16 34 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 35 H 0.14 4.48 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -71.51 329.44 7.38 -64.13 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 1.15 Total: 19.48 kcal Atomic # 6 Polarization: -51.69 SS G_CDS: 3.85 Total: -47.84 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: 0.30 Total: -53.85 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: -0.19 Total: -11.63 kcal Atomic # 9 Polarization: -12.35 SS G_CDS: 1.53 Total: -10.82 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Atomic # 16 Polarization: -3.03 SS G_CDS: -1.27 Total: -4.30 kcal Total: -71.51 7.38 -64.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245746712.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.750 kcal (2) G-P(sol) polarization free energy of solvation -71.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds