Wall clock time and date at job start Sat Apr 11 2020 00:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42900 * 109.46921 * 2 1 4 4 C 1.35906 * 116.99887 * 180.02562 * 3 2 1 5 5 C 1.39057 * 119.94431 * 89.99811 * 4 3 2 6 6 F 1.35095 * 119.97547 * 359.97438 * 5 4 3 7 7 C 1.38022 * 120.04375 * 179.97438 * 5 4 3 8 8 C 1.39498 * 119.92305 * 0.02562 * 7 5 4 9 9 C 1.48215 * 120.05898 * 179.97438 * 8 7 5 10 10 C 1.40097 * 119.98873 * 5.00541 * 9 8 7 11 11 N 1.32155 * 120.29320 * 179.97438 * 10 9 8 12 12 C 1.31904 * 120.28704 * 0.02562 * 11 10 9 13 13 C 1.40813 * 119.97749 * 0.02562 * 12 11 10 14 14 C 1.41320 * 120.14440 * 180.02562 * 13 12 11 15 15 H 1.07995 * 119.99571 * 359.61676 * 14 13 12 16 16 C 1.40041 * 119.99960 * 179.62032 * 14 13 12 17 17 N 1.30731 * 120.00130 * 178.05540 * 16 14 13 18 18 Si 1.86807 * 120.00067 * 358.05990 * 16 14 13 19 19 H 1.48500 * 109.46968 * 180.02562 * 18 16 14 20 20 H 1.48500 * 109.46684 * 299.99695 * 18 16 14 21 21 H 1.48495 * 109.46988 * 59.99712 * 18 16 14 22 22 N 1.32554 * 119.99352 * 185.32164 * 9 8 7 23 23 C 1.39426 * 119.88632 * 0.27532 * 8 7 5 24 24 C 1.38024 * 119.94993 * 359.42423 * 23 8 7 25 25 Cl 1.73603 * 119.96020 * 180.29797 * 24 23 8 26 26 H 1.09005 * 109.47029 * 60.00207 * 1 2 3 27 27 H 1.08998 * 109.46746 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46740 * 299.99920 * 1 2 3 29 29 H 1.09005 * 109.47368 * 240.00336 * 2 1 3 30 30 H 1.08999 * 109.47407 * 119.99966 * 2 1 3 31 31 H 1.07999 * 120.04208 * 180.02562 * 7 5 4 32 32 H 1.07999 * 119.85452 * 0.02562 * 10 9 8 33 33 H 1.08004 * 120.00969 * 180.02562 * 12 11 10 34 34 H 0.97002 * 119.99668 * 354.90133 * 17 16 14 35 35 H 1.07998 * 120.02807 * 179.72274 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5254 -0.0005 5 6 4.0413 1.6165 -1.2058 6 9 3.3696 1.5274 -2.3745 7 6 5.4096 1.7979 -1.2087 8 6 6.1020 1.8892 -0.0012 9 6 7.5714 2.0834 -0.0008 10 6 8.2520 2.2804 -1.2094 11 7 9.5620 2.4547 -1.2160 12 6 10.2402 2.4442 -0.0848 13 6 9.5681 2.2461 1.1367 14 6 10.2912 2.2348 2.3508 15 1 11.3624 2.3721 2.3426 16 6 9.6187 2.0455 3.5645 17 7 10.2919 1.9970 4.6842 18 14 7.7598 1.8622 3.5837 19 1 7.2953 1.6750 4.9817 20 1 7.1361 3.0839 3.0147 21 1 7.3704 0.6826 2.7700 22 7 8.2420 2.0645 1.1424 23 6 5.4103 1.7912 1.2055 24 6 4.0413 1.6160 1.2027 25 17 3.1788 1.5016 2.7049 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8935 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 5.9435 1.8690 -2.1448 32 1 7.7036 2.2906 -2.1397 33 1 11.3106 2.5875 -0.0954 34 1 11.2616 2.0177 4.6683 35 1 5.9447 1.8571 2.1416 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245822697.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:40:54 Heat of formation + Delta-G solvation = -37.614221 kcal Electronic energy + Delta-G solvation = -24128.404248 eV Core-core repulsion = 20259.554161 eV Total energy + Delta-G solvation = -3868.850087 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 322.063 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.98807 -40.18609 -39.41391 -37.62473 -36.51014 -34.44986 -33.18026 -32.22888 -31.25040 -30.58987 -28.67757 -26.16062 -24.29678 -23.44973 -23.04852 -21.98906 -21.05855 -18.78577 -18.48215 -17.35855 -17.21686 -16.31533 -16.00495 -15.94321 -15.44780 -15.21659 -14.88795 -14.49013 -14.10250 -13.87863 -13.77549 -13.26190 -13.08405 -12.93641 -12.74037 -12.50043 -12.13814 -11.86479 -11.64353 -11.49147 -11.41997 -11.30254 -11.14813 -11.04689 -10.12631 -10.03563 -9.90126 -9.63839 -9.32065 -9.00122 -8.80280 -7.99064 -7.93011 -7.44469 -5.15700 0.49499 0.94258 1.94975 2.06101 2.35715 3.17037 3.30411 3.40252 3.55444 3.71331 4.01007 4.10446 4.38206 4.45561 4.72337 4.90002 4.92405 5.03249 5.09025 5.14447 5.20541 5.37652 5.42270 5.50370 5.63190 5.66774 5.77170 5.85443 5.90301 6.05683 6.27242 6.39485 6.48049 6.61423 7.03201 7.11133 7.21140 7.65181 7.80476 8.18529 8.57373 9.04707 9.66140 Molecular weight = 322.06amu Principal moments of inertia in cm(-1) A = 0.015820 B = 0.004811 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.432532 B = 5818.302155 C = 7461.884443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.057 3.943 3 O -0.318 6.318 4 C 0.069 3.931 5 C 0.093 3.907 6 F -0.126 7.126 7 C -0.121 4.121 8 C 0.014 3.986 9 C 0.161 3.839 10 C -0.097 4.097 11 N -0.418 5.418 12 C -0.029 4.029 13 C 0.200 3.800 14 C -0.443 4.443 15 H 0.093 0.907 16 C 0.041 3.959 17 N -0.783 5.783 18 Si 1.136 2.864 19 H -0.320 1.320 20 H -0.281 1.281 21 H -0.276 1.276 22 N -0.538 5.538 23 C -0.088 4.088 24 C -0.032 4.032 25 Cl -0.046 7.046 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.155 0.845 32 H 0.140 0.860 33 H 0.144 0.856 34 H 0.289 0.711 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.005 -3.474 -5.811 15.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.017 4.017 3 O -0.235 6.235 4 C 0.023 3.977 5 C 0.073 3.927 6 F -0.104 7.104 7 C -0.141 4.141 8 C 0.012 3.988 9 C 0.018 3.982 10 C -0.253 4.253 11 N -0.128 5.128 12 C -0.202 4.202 13 C 0.075 3.925 14 C -0.476 4.476 15 H 0.111 0.889 16 C -0.183 4.183 17 N -0.403 5.403 18 Si 0.971 3.029 19 H -0.252 1.252 20 H -0.210 1.210 21 H -0.205 1.205 22 N -0.261 5.261 23 C -0.107 4.107 24 C -0.059 4.059 25 Cl -0.017 7.017 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.172 0.828 32 H 0.157 0.843 33 H 0.161 0.839 34 H 0.101 0.899 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -15.389 -3.516 -4.691 16.468 hybrid contribution 1.596 0.037 -1.046 1.909 sum -13.793 -3.479 -5.737 15.338 Atomic orbital electron populations 1.21735 0.92783 1.02563 1.03442 1.22831 0.95876 0.81900 1.01095 1.86096 1.15798 1.27503 1.94088 1.18265 0.84370 1.05233 0.89872 1.17524 0.89736 1.04848 0.80582 1.91509 1.80263 1.93700 1.44971 1.21234 0.91469 1.01518 0.99845 1.18364 0.91992 0.97109 0.91334 1.20001 0.90938 0.95815 0.91426 1.22468 0.91187 1.15443 0.96251 1.67745 1.07722 1.06997 1.30344 1.23240 0.99814 1.08756 0.88372 1.19371 0.87919 0.90269 0.94908 1.20879 0.96810 1.38908 0.90977 0.88900 1.27841 1.10842 0.89041 0.90580 1.70630 1.11676 1.28688 1.29311 0.82380 0.69949 0.79337 0.71241 1.25210 1.20982 1.20490 1.67180 1.08647 1.24049 1.26175 1.21717 0.91030 0.97313 1.00636 1.20977 0.92379 1.05591 0.86987 1.98372 1.76726 1.96359 1.30195 0.91603 0.90592 0.91482 0.92704 0.92370 0.82780 0.84277 0.83868 0.89929 0.82952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.28 37.16 0.38 -0.84 16 2 C 0.06 0.62 6.78 37.16 0.25 0.87 16 3 O -0.32 -4.42 9.36 -19.45 -0.18 -4.60 16 4 C 0.07 1.04 5.73 -39.04 -0.22 0.81 16 5 C 0.09 1.37 7.30 -39.36 -0.29 1.08 16 6 F -0.13 -1.77 17.10 2.25 0.04 -1.73 16 7 C -0.12 -1.81 9.39 -39.19 -0.37 -2.18 16 8 C 0.01 0.26 5.87 -104.88 -0.62 -0.36 16 9 C 0.16 3.41 6.73 -82.76 -0.56 2.85 16 10 C -0.10 -1.97 10.61 -16.72 -0.18 -2.14 16 11 N -0.42 -9.13 10.47 -12.04 -0.13 -9.25 16 12 C -0.03 -0.65 10.97 -16.55 -0.18 -0.84 16 13 C 0.20 4.85 6.42 -84.84 -0.54 4.30 16 14 C -0.44 -11.01 9.59 -37.74 -0.36 -11.37 16 15 H 0.09 2.23 8.06 -52.49 -0.42 1.81 16 16 C 0.04 1.03 5.52 -17.34 -0.10 0.93 16 17 N -0.78 -19.74 13.65 55.55 0.76 -18.98 16 18 Si 1.14 26.43 22.22 -169.99 -3.78 22.65 16 19 H -0.32 -7.33 7.11 56.52 0.40 -6.93 16 20 H -0.28 -6.47 6.65 56.52 0.38 -6.10 16 21 H -0.28 -6.31 6.47 56.52 0.37 -5.95 16 22 N -0.54 -12.81 4.31 -7.51 -0.03 -12.84 16 23 C -0.09 -1.62 9.24 -39.22 -0.36 -1.98 16 24 C -0.03 -0.52 6.33 -39.42 -0.25 -0.77 16 25 Cl -0.05 -0.67 28.49 -51.86 -1.48 -2.15 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.15 1.97 6.21 -52.49 -0.33 1.64 16 32 H 0.14 2.32 6.21 -52.49 -0.33 1.99 16 33 H 0.14 2.89 8.06 -52.48 -0.42 2.47 16 34 H 0.29 6.86 8.72 -40.82 -0.36 6.50 16 35 H 0.15 3.08 2.57 -52.49 -0.14 2.95 16 LS Contribution 317.15 15.07 4.78 4.78 Total: -1.00 -26.37 317.15 -6.37 -32.73 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: -2.96 Total: -0.99 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -3.39 Total: -9.62 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: 0.60 Total: -41.07 kcal Atomic # 8 Polarization: -4.42 SS G_CDS: -0.18 Total: -4.60 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 26.43 SS G_CDS: -3.78 Total: 22.65 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.48 Total: -2.15 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -26.37 -6.37 -32.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245822697.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.880 kcal (2) G-P(sol) polarization free energy of solvation -26.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds