Wall clock time and date at job start Sat Apr 11 2020 00:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42900 * 109.46921 * 2 1 4 4 C 1.35906 * 116.99887 * 180.02562 * 3 2 1 5 5 C 1.39057 * 119.94431 * 89.99811 * 4 3 2 6 6 F 1.35095 * 119.97547 * 359.97438 * 5 4 3 7 7 C 1.38022 * 120.04375 * 179.97438 * 5 4 3 8 8 C 1.39498 * 119.92305 * 0.02562 * 7 5 4 9 9 C 1.48215 * 120.05898 * 179.97438 * 8 7 5 10 10 C 1.40097 * 119.98873 * 5.00541 * 9 8 7 11 11 N 1.32155 * 120.29320 * 179.97438 * 10 9 8 12 12 C 1.31904 * 120.28704 * 0.02562 * 11 10 9 13 13 C 1.40813 * 119.97749 * 0.02562 * 12 11 10 14 14 C 1.41320 * 120.14440 * 180.02562 * 13 12 11 15 15 H 1.07995 * 119.99571 * 359.61676 * 14 13 12 16 16 C 1.40041 * 119.99960 * 179.62032 * 14 13 12 17 17 N 1.30731 * 120.00130 * 178.05540 * 16 14 13 18 18 Si 1.86807 * 120.00067 * 358.05990 * 16 14 13 19 19 H 1.48500 * 109.46968 * 180.02562 * 18 16 14 20 20 H 1.48500 * 109.46684 * 299.99695 * 18 16 14 21 21 H 1.48495 * 109.46988 * 59.99712 * 18 16 14 22 22 N 1.32554 * 119.99352 * 185.32164 * 9 8 7 23 23 C 1.39426 * 119.88632 * 0.27532 * 8 7 5 24 24 C 1.38024 * 119.94993 * 359.42423 * 23 8 7 25 25 Cl 1.73603 * 119.96020 * 180.29797 * 24 23 8 26 26 H 1.09005 * 109.47029 * 60.00207 * 1 2 3 27 27 H 1.08998 * 109.46746 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46740 * 299.99920 * 1 2 3 29 29 H 1.09005 * 109.47368 * 240.00336 * 2 1 3 30 30 H 1.08999 * 109.47407 * 119.99966 * 2 1 3 31 31 H 1.07999 * 120.04208 * 180.02562 * 7 5 4 32 32 H 1.07999 * 119.85452 * 0.02562 * 10 9 8 33 33 H 1.08004 * 120.00969 * 180.02562 * 12 11 10 34 34 H 0.97002 * 119.99668 * 354.90133 * 17 16 14 35 35 H 1.07998 * 120.02807 * 179.72274 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5254 -0.0005 5 6 4.0413 1.6165 -1.2058 6 9 3.3696 1.5274 -2.3745 7 6 5.4096 1.7979 -1.2087 8 6 6.1020 1.8892 -0.0012 9 6 7.5714 2.0834 -0.0008 10 6 8.2520 2.2804 -1.2094 11 7 9.5620 2.4547 -1.2160 12 6 10.2402 2.4442 -0.0848 13 6 9.5681 2.2461 1.1367 14 6 10.2912 2.2348 2.3508 15 1 11.3624 2.3721 2.3426 16 6 9.6187 2.0455 3.5645 17 7 10.2919 1.9970 4.6842 18 14 7.7598 1.8622 3.5837 19 1 7.2953 1.6750 4.9817 20 1 7.1361 3.0839 3.0147 21 1 7.3704 0.6826 2.7700 22 7 8.2420 2.0645 1.1424 23 6 5.4103 1.7912 1.2055 24 6 4.0413 1.6160 1.2027 25 17 3.1788 1.5016 2.7049 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8935 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 5.9435 1.8690 -2.1448 32 1 7.7036 2.2906 -2.1397 33 1 11.3106 2.5875 -0.0954 34 1 11.2616 2.0177 4.6683 35 1 5.9447 1.8571 2.1416 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245822697.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:40:54 Heat of formation + Delta-G solvation = -51.829630 kcal Electronic energy + Delta-G solvation = -24129.020675 eV Core-core repulsion = 20259.554161 eV Total energy + Delta-G solvation = -3869.466514 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 322.063 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.13104 -41.67071 -40.80781 -38.83092 -37.72645 -36.26538 -34.81206 -33.60948 -32.39382 -31.89197 -30.06704 -27.89319 -25.74754 -24.82988 -23.97973 -23.48696 -22.56136 -20.61786 -19.65942 -18.70911 -18.50792 -17.84350 -17.53449 -17.14412 -16.94865 -16.23313 -15.94598 -15.75156 -15.59336 -15.53073 -15.37017 -14.84667 -14.54688 -14.20089 -13.85529 -13.68849 -13.26320 -13.17209 -13.14065 -12.95102 -12.80507 -12.62371 -12.47915 -12.21272 -11.79722 -11.70911 -11.46790 -11.14138 -11.01972 -10.53912 -10.04865 -9.80417 -9.46036 -9.26165 -7.00892 -0.83969 -0.30897 0.42424 0.62852 0.74256 1.43230 1.55162 1.87167 1.93926 2.23258 2.33819 2.57238 2.77649 3.07219 3.41489 3.55340 3.74906 3.77902 3.89872 3.94577 4.06592 4.11143 4.18325 4.34995 4.38231 4.49037 4.61655 4.69524 4.82586 4.84532 4.97524 5.07119 5.18904 5.24389 5.26171 5.34869 5.80925 6.01578 6.14846 6.35341 6.82749 7.30025 7.79748 Molecular weight = 322.06amu Principal moments of inertia in cm(-1) A = 0.015820 B = 0.004811 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.432532 B = 5818.302155 C = 7461.884443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.049 3.951 3 O -0.328 6.328 4 C 0.083 3.917 5 C 0.099 3.901 6 F -0.118 7.118 7 C -0.098 4.098 8 C -0.009 4.009 9 C 0.151 3.849 10 C -0.080 4.080 11 N -0.423 5.423 12 C -0.042 4.042 13 C 0.191 3.809 14 C -0.474 4.474 15 H 0.088 0.912 16 C 0.020 3.980 17 N -0.809 5.809 18 Si 1.159 2.841 19 H -0.321 1.321 20 H -0.284 1.284 21 H -0.276 1.276 22 N -0.556 5.556 23 C -0.102 4.102 24 C -0.038 4.038 25 Cl -0.037 7.037 26 H 0.066 0.934 27 H 0.099 0.901 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.183 0.817 32 H 0.183 0.817 33 H 0.159 0.841 34 H 0.290 0.710 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.391 -3.941 -8.335 18.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.025 4.025 3 O -0.245 6.245 4 C 0.037 3.963 5 C 0.079 3.921 6 F -0.096 7.096 7 C -0.117 4.117 8 C -0.011 4.011 9 C 0.010 3.990 10 C -0.237 4.237 11 N -0.133 5.133 12 C -0.212 4.212 13 C 0.065 3.935 14 C -0.508 4.508 15 H 0.106 0.894 16 C -0.200 4.200 17 N -0.431 5.431 18 Si 0.993 3.007 19 H -0.254 1.254 20 H -0.213 1.213 21 H -0.205 1.205 22 N -0.279 5.279 23 C -0.121 4.121 24 C -0.066 4.066 25 Cl -0.008 7.008 26 H 0.086 0.914 27 H 0.118 0.882 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.200 0.800 32 H 0.200 0.800 33 H 0.176 0.824 34 H 0.102 0.898 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -17.762 -3.985 -7.221 19.583 hybrid contribution 2.077 0.152 -0.504 2.143 sum -15.684 -3.833 -7.726 17.899 Atomic orbital electron populations 1.21768 0.90774 1.04136 1.03399 1.23130 0.97479 0.80296 1.01581 1.86087 1.14844 1.29498 1.94066 1.18342 0.84957 1.03379 0.89646 1.17424 0.89605 1.04462 0.80639 1.91540 1.80061 1.93570 1.44413 1.21343 0.91502 0.99281 0.99578 1.18236 0.90505 0.99825 0.92525 1.20516 0.92532 0.94974 0.91021 1.23219 0.90817 1.12046 0.97593 1.67852 1.08542 1.07122 1.29822 1.23422 1.00711 1.09027 0.87999 1.19531 0.88427 0.90156 0.95369 1.20855 0.96815 1.41597 0.91494 0.89357 1.28297 1.12145 0.88826 0.90775 1.70631 1.11858 1.31081 1.29501 0.82084 0.68521 0.79206 0.70897 1.25410 1.21333 1.20450 1.67116 1.08648 1.24230 1.27917 1.21570 0.91979 0.98550 1.00026 1.20929 0.91790 1.05956 0.87901 1.98372 1.76331 1.96329 1.29799 0.91444 0.88207 0.91723 0.91861 0.92269 0.79985 0.80001 0.82390 0.89825 0.85133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 10.28 71.98 0.74 -1.21 16 2 C 0.05 0.91 6.78 71.98 0.49 1.40 16 3 O -0.33 -8.22 9.36 -92.50 -0.87 -9.08 16 4 C 0.08 2.29 5.73 22.62 0.13 2.42 16 5 C 0.10 2.54 7.30 22.41 0.16 2.70 16 6 F -0.12 -2.81 17.10 44.97 0.77 -2.04 16 7 C -0.10 -2.55 9.39 22.52 0.21 -2.34 16 8 C -0.01 -0.30 5.87 -20.03 -0.12 -0.42 16 9 C 0.15 6.14 6.73 42.14 0.28 6.43 16 10 C -0.08 -2.96 10.61 85.10 0.90 -2.06 16 11 N -0.42 -17.50 10.47 -192.01 -2.01 -19.51 16 12 C -0.04 -1.85 10.97 85.31 0.94 -0.92 16 13 C 0.19 9.32 6.42 40.22 0.26 9.58 16 14 C -0.47 -24.29 9.59 23.47 0.23 -24.06 16 15 H 0.09 4.43 8.06 -2.91 -0.02 4.41 16 16 C 0.02 1.03 5.52 85.29 0.47 1.50 16 17 N -0.81 -42.18 13.65 21.84 0.30 -41.88 16 18 Si 1.16 54.87 22.22 68.60 1.52 56.40 16 19 H -0.32 -14.96 7.11 99.48 0.71 -14.25 16 20 H -0.28 -13.36 6.65 99.48 0.66 -12.70 16 21 H -0.28 -12.81 6.47 99.48 0.64 -12.16 16 22 N -0.56 -26.34 4.31 -177.66 -0.77 -27.10 16 23 C -0.10 -3.64 9.24 22.51 0.21 -3.43 16 24 C -0.04 -1.18 6.33 22.37 0.14 -1.04 16 25 Cl -0.04 -1.06 28.49 -2.72 -0.08 -1.14 16 26 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 27 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.18 3.64 6.21 -2.91 -0.02 3.62 16 32 H 0.18 5.08 6.21 -2.91 -0.02 5.07 16 33 H 0.16 6.32 8.06 -2.91 -0.02 6.30 16 34 H 0.29 14.36 8.72 -92.71 -0.81 13.55 16 35 H 0.13 5.27 2.57 -2.91 -0.01 5.27 16 Total: -1.00 -56.82 317.15 4.93 -51.90 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: 1.02 Total: 3.91 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: 5.04 Total: -11.44 kcal Atomic # 7 Polarization: -86.02 SS G_CDS: -2.48 Total: -88.50 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: -0.87 Total: -9.08 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.77 Total: -2.04 kcal Atomic # 14 Polarization: 54.87 SS G_CDS: 1.52 Total: 56.40 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -0.08 Total: -1.14 kcal Total: -56.82 4.93 -51.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245822697.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.066 kcal (2) G-P(sol) polarization free energy of solvation -56.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds