Wall clock time and date at job start Sat Apr 11 2020 00:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42902 * 109.46889 * 2 1 4 4 C 1.35718 * 116.99872 * 180.02562 * 3 2 1 5 5 N 1.32300 * 119.63079 * 0.02562 * 4 3 2 6 6 C 1.32002 * 121.93811 * 179.97438 * 5 4 3 7 7 C 1.37841 * 120.98489 * 359.97438 * 6 5 4 8 8 C 1.39905 * 119.15331 * 0.02562 * 7 6 5 9 9 C 1.48342 * 120.87883 * 179.97438 * 8 7 6 10 10 C 1.39041 * 120.41760 * 65.00396 * 9 8 7 11 11 C 1.40954 * 118.12268 * 180.02562 * 10 9 8 12 12 C 1.41380 * 120.57044 * 180.02562 * 11 10 9 13 13 H 1.08005 * 120.00437 * 203.54207 * 12 11 10 14 14 C 1.39910 * 120.00254 * 23.54540 * 12 11 10 15 15 N 1.30867 * 119.99506 * 17.59695 * 14 12 11 16 16 Si 1.86793 * 120.00317 * 197.59857 * 14 12 11 17 17 H 1.48506 * 109.47045 * 94.68989 * 16 14 12 18 18 H 1.48496 * 109.47328 * 214.68842 * 16 14 12 19 19 H 1.48498 * 109.47073 * 334.69174 * 16 14 12 20 20 C 1.40793 * 118.86044 * 0.02562 * 11 10 9 21 21 N 1.31503 * 120.70135 * 359.97438 * 20 11 10 22 22 C 1.32170 * 122.07710 * 0.02562 * 21 20 11 23 23 F 1.35098 * 119.46218 * 180.02562 * 22 21 20 24 24 C 1.38764 * 119.63581 * 180.23280 * 4 3 2 25 25 Cl 1.73605 * 120.52852 * 0.05145 * 24 4 3 26 26 H 1.09000 * 109.47394 * 60.00188 * 1 2 3 27 27 H 1.09003 * 109.47252 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47591 * 299.99987 * 1 2 3 29 29 H 1.08996 * 109.46864 * 239.99996 * 2 1 3 30 30 H 1.09000 * 109.47394 * 119.99812 * 2 1 3 31 31 H 1.08007 * 119.50963 * 179.97438 * 6 5 4 32 32 H 1.07999 * 120.42604 * 180.02562 * 7 6 5 33 33 H 1.07993 * 120.94106 * 0.04415 * 10 9 8 34 34 H 0.96996 * 119.99697 * 180.02562 * 15 14 12 35 35 H 1.07996 * 119.65263 * 179.72329 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3517 1.5252 -0.0005 5 7 4.1509 0.4708 -0.0015 6 6 5.4654 0.5910 -0.0026 7 6 6.0645 1.8324 -0.0032 8 6 5.2604 2.9772 -0.0022 9 6 5.8646 4.3320 -0.0023 10 6 6.6132 4.7689 -1.0895 11 6 7.1656 6.0647 -1.0381 12 6 7.9351 6.5615 -2.1151 13 1 8.6530 7.3507 -1.9471 14 6 7.7665 6.0310 -3.3987 15 7 6.6916 5.3418 -3.6858 16 14 9.0755 6.3063 -4.7025 17 1 10.0044 5.1479 -4.7236 18 1 8.4285 6.4461 -6.0318 19 1 9.8342 7.5436 -4.3886 20 6 6.9379 6.8557 0.1041 21 7 6.2222 6.3964 1.1072 22 6 5.6893 5.1869 1.0933 23 9 4.9626 4.7688 2.1527 24 6 3.8739 2.8108 0.0043 25 17 2.8203 4.1905 0.0124 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8932 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 6.0808 -0.2967 -0.0030 32 1 7.1410 1.9202 -0.0045 33 1 6.7668 4.1336 -1.9491 34 1 6.5749 4.9737 -4.5756 35 1 7.3589 7.8487 0.1589 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245845049.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:41:06 Heat of formation + Delta-G solvation = -31.505247 kcal Electronic energy + Delta-G solvation = -24179.285701 eV Core-core repulsion = 20310.700519 eV Total energy + Delta-G solvation = -3868.585182 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 322.063 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -47.59650 -40.46193 -38.55950 -37.74901 -36.07208 -34.27324 -33.33234 -32.00031 -30.54651 -29.66611 -29.31241 -25.61695 -24.41629 -23.21040 -22.73454 -21.87715 -20.88039 -18.37625 -17.25851 -16.91751 -16.67130 -16.29606 -16.08150 -15.91384 -15.20914 -14.82101 -14.46861 -14.01683 -13.98744 -13.73342 -13.27622 -12.71146 -12.49155 -12.47237 -12.24589 -12.23925 -12.01036 -11.83967 -11.57857 -11.57260 -11.37446 -11.31003 -10.80954 -10.72823 -10.60994 -10.29698 -9.59618 -9.54988 -9.39253 -8.56248 -8.35044 -8.18397 -7.73475 -7.09190 -4.69490 1.14614 1.32057 2.21914 2.54290 2.56948 2.91719 2.95538 2.96928 3.04122 3.69404 3.83409 4.27182 4.40585 4.83077 4.95306 4.97385 5.06760 5.10080 5.20591 5.30817 5.37271 5.48230 5.64776 5.76174 5.90257 5.97367 6.02091 6.29694 6.41223 6.45964 6.64844 6.83210 6.85191 7.28425 7.32040 7.51154 7.66864 7.87346 8.11802 8.37835 8.40759 9.13687 9.82529 Molecular weight = 322.06amu Principal moments of inertia in cm(-1) A = 0.015248 B = 0.004325 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.846486 B = 6471.876470 C = 7217.482015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.067 3.933 3 O -0.297 6.297 4 C 0.329 3.671 5 N -0.537 5.537 6 C 0.135 3.865 7 C -0.186 4.186 8 C 0.074 3.926 9 C -0.114 4.114 10 C -0.086 4.086 11 C 0.054 3.946 12 C -0.438 4.438 13 H 0.090 0.910 14 C 0.073 3.927 15 N -0.781 5.781 16 Si 0.916 3.084 17 H -0.265 1.265 18 H -0.275 1.275 19 H -0.258 1.258 20 C 0.016 3.984 21 N -0.487 5.487 22 C 0.181 3.819 23 F -0.142 7.142 24 C -0.094 4.094 25 Cl -0.034 7.034 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.164 0.836 32 H 0.146 0.854 33 H 0.140 0.860 34 H 0.288 0.712 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.864 -9.822 1.141 10.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.009 4.009 3 O -0.205 6.205 4 C 0.150 3.850 5 N -0.261 5.261 6 C -0.020 4.020 7 C -0.207 4.207 8 C 0.065 3.935 9 C -0.118 4.118 10 C -0.112 4.112 11 C 0.049 3.951 12 C -0.467 4.467 13 H 0.108 0.892 14 C -0.148 4.148 15 N -0.405 5.405 16 Si 0.740 3.260 17 H -0.190 1.190 18 H -0.200 1.200 19 H -0.182 1.182 20 C -0.145 4.145 21 N -0.199 5.199 22 C 0.026 3.974 23 F -0.121 7.121 24 C -0.124 4.124 25 Cl -0.005 7.005 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.181 0.819 32 H 0.163 0.837 33 H 0.158 0.842 34 H 0.099 0.901 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.885 -9.967 1.707 11.230 hybrid contribution 0.800 0.197 -1.241 1.489 sum -4.086 -9.770 0.466 10.600 Atomic orbital electron populations 1.21810 0.93138 1.02599 1.03449 1.22580 0.94653 0.81255 1.02373 1.86314 1.16188 1.30292 1.87659 1.19244 0.84554 0.88061 0.93157 1.67372 1.06806 1.31394 1.20560 1.22309 0.88909 0.97282 0.93486 1.22120 1.01693 0.91468 1.05404 1.18909 0.89591 0.94418 0.90613 1.18878 1.04335 0.91923 0.96694 1.21661 0.97467 0.96135 0.95903 1.18444 0.91884 0.91140 0.93610 1.19592 1.18229 1.17450 0.91413 0.89207 1.26039 0.95475 0.93052 1.00193 1.69780 1.22958 1.24952 1.22790 0.86143 0.80711 0.80240 0.78921 1.19032 1.19996 1.18173 1.22346 1.01781 0.99241 0.91123 1.66328 1.09847 1.12981 1.30695 1.17375 1.02507 0.91782 0.85686 1.91430 1.75731 1.89279 1.55695 1.20954 0.91556 0.87493 1.12374 1.98369 1.64700 1.40730 1.96729 0.91611 0.90480 0.91618 0.91685 0.91703 0.81869 0.83657 0.84240 0.90094 0.84230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 10.28 37.16 0.38 -1.05 16 2 C 0.07 0.82 6.03 37.16 0.22 1.04 16 3 O -0.30 -4.84 9.59 -18.86 -0.18 -5.02 16 4 C 0.33 5.87 7.48 -17.16 -0.13 5.74 16 5 N -0.54 -8.63 9.20 -13.39 -0.12 -8.75 16 6 C 0.13 1.94 11.16 -17.62 -0.20 1.74 16 7 C -0.19 -3.07 9.85 -39.10 -0.39 -3.45 16 8 C 0.07 1.48 5.04 -104.59 -0.53 0.95 16 9 C -0.11 -2.59 4.77 -104.76 -0.50 -3.09 16 10 C -0.09 -2.04 8.52 -38.26 -0.33 -2.36 16 11 C 0.05 1.30 5.59 -106.71 -0.60 0.70 16 12 C -0.44 -10.18 9.08 -37.76 -0.34 -10.53 16 13 H 0.09 1.96 7.90 -52.48 -0.41 1.55 16 14 C 0.07 1.61 5.17 -17.34 -0.09 1.52 16 15 N -0.78 -18.15 10.92 55.55 0.61 -17.55 16 16 Si 0.92 16.60 29.59 -169.99 -5.03 11.57 16 17 H -0.27 -4.76 7.11 56.52 0.40 -4.36 16 18 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 19 H -0.26 -4.62 7.11 56.52 0.40 -4.22 16 20 C 0.02 0.39 10.96 -16.73 -0.18 0.20 16 21 N -0.49 -11.92 10.34 -12.59 -0.13 -12.05 16 22 C 0.18 4.33 7.69 -16.72 -0.13 4.20 16 23 F -0.14 -3.33 16.14 2.25 0.04 -3.29 16 24 C -0.09 -1.86 6.22 -38.86 -0.24 -2.10 16 25 Cl -0.03 -0.69 26.57 -51.86 -1.38 -2.07 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 30 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 31 H 0.16 1.66 8.06 -52.48 -0.42 1.24 16 32 H 0.15 2.12 8.06 -52.49 -0.42 1.70 16 33 H 0.14 3.33 6.19 -52.49 -0.32 3.01 16 34 H 0.29 6.10 8.30 -40.82 -0.34 5.76 16 35 H 0.14 2.94 8.06 -52.49 -0.42 2.51 16 LS Contribution 328.71 15.07 4.95 4.95 Total: -1.00 -27.34 328.71 -7.54 -34.88 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -3.25 Total: 3.83 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -3.04 Total: -6.49 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.35 Total: -38.35 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: -0.18 Total: -5.02 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.04 Total: -3.29 kcal Atomic # 14 Polarization: 16.60 SS G_CDS: -5.03 Total: 11.57 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.38 Total: -2.07 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.34 -7.54 -34.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245845049.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.372 kcal (2) G-P(sol) polarization free energy of solvation -27.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds