Wall clock time and date at job start Sat Apr 11 2020 00:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46980 * 2 1 4 4 C 1.50700 * 109.47166 * 240.00237 * 2 1 3 5 5 H 1.07996 * 120.00119 * 275.00084 * 4 2 1 6 6 C 1.37884 * 119.99779 * 95.00435 * 4 2 1 7 7 N 1.31513 * 119.99490 * 184.91656 * 6 4 2 8 8 Si 1.86799 * 120.00246 * 4.91186 * 6 4 2 9 9 H 1.48499 * 109.47040 * 84.83234 * 8 6 4 10 10 H 1.48492 * 109.47134 * 204.83674 * 8 6 4 11 11 H 1.48498 * 109.47162 * 324.83720 * 8 6 4 12 12 N 1.46501 * 109.47100 * 120.00042 * 2 1 3 13 13 C 1.37858 * 120.00060 * 274.99834 * 12 2 1 14 14 N 1.32636 * 120.91110 * 0.02562 * 13 12 2 15 15 C 1.32348 * 121.48466 * 180.02562 * 14 13 12 16 16 N 1.31181 * 122.97032 * 359.97438 * 15 14 13 17 17 C 1.34107 * 120.46399 * 0.02562 * 16 15 14 18 18 C 1.40265 * 121.99645 * 180.02562 * 17 16 15 19 19 Cl 1.73606 * 120.21661 * 0.02562 * 18 17 16 20 20 C 1.36407 * 119.56229 * 180.02562 * 18 17 16 21 21 C 1.39192 * 121.01766 * 359.95527 * 20 18 17 22 22 N 1.48022 * 119.54676 * 180.02562 * 21 20 18 23 23 O 1.21804 * 120.00532 * 179.97438 * 22 21 20 24 24 O 1.21805 * 119.99785 * 359.97438 * 22 21 20 25 25 C 1.36389 * 120.91562 * 359.97438 * 21 20 18 26 26 C 1.39950 * 119.51904 * 0.02562 * 25 21 20 27 27 H 1.08996 * 109.47380 * 295.03271 * 1 2 3 28 28 H 1.09006 * 109.46986 * 55.03463 * 1 2 3 29 29 H 1.08992 * 109.47087 * 175.02975 * 1 2 3 30 30 H 0.97007 * 119.99636 * 179.97438 * 7 6 4 31 31 H 0.97002 * 119.99716 * 95.00317 * 12 2 1 32 32 H 1.08003 * 118.51084 * 179.97438 * 15 14 13 33 33 H 1.08002 * 119.49223 * 179.97438 * 20 18 17 34 34 H 1.07998 * 120.23923 * 180.02562 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1355 -1.7854 -1.2291 6 6 2.3603 0.0123 -2.3580 7 7 2.7060 -0.6130 -3.4622 8 14 2.3136 1.8793 -2.3173 9 1 3.5991 2.3950 -1.7820 10 1 2.1058 2.3993 -3.6926 11 1 1.1987 2.3276 -1.4449 12 7 2.0183 -0.6906 1.1962 13 6 2.1500 -0.0029 2.3837 14 7 1.8394 1.2841 2.4638 15 6 1.9619 1.9554 3.5978 16 7 2.3922 1.4071 4.7091 17 6 2.7341 0.1107 4.7397 18 6 3.1973 -0.5084 5.9100 19 17 3.3439 0.4022 7.3808 20 6 3.5319 -1.8305 5.8848 21 6 3.4200 -2.5765 4.7150 22 7 3.7916 -4.0093 4.7246 23 8 3.6965 -4.6701 3.7058 24 8 4.1925 -4.5276 5.7514 25 6 2.9717 -2.0059 3.5602 26 6 2.6200 -0.6513 3.5516 27 1 -0.3634 0.4348 0.9311 28 1 -0.3633 0.5890 -0.8422 29 1 -0.3633 -1.0237 -0.0890 30 1 2.9364 -0.1046 -4.2556 31 1 2.2491 -1.6318 1.1525 32 1 1.6956 3.0020 3.6086 33 1 3.8889 -2.3060 6.7864 34 1 2.8887 -2.5951 2.6589 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333692811.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:41:37 Heat of formation + Delta-G solvation = 58.532484 kcal Electronic energy + Delta-G solvation = -24107.037996 eV Core-core repulsion = 20262.277105 eV Total energy + Delta-G solvation = -3844.760891 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 322.062 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.35264 -41.46000 -38.29083 -37.12455 -36.69783 -36.60399 -33.86849 -32.57123 -31.94868 -30.97987 -29.45627 -26.92853 -25.63567 -24.78688 -23.82565 -22.43478 -20.98949 -19.85431 -19.45199 -18.80541 -17.76240 -17.61436 -17.22109 -16.42813 -15.83957 -15.60993 -15.41718 -14.98942 -14.73210 -14.05917 -13.84790 -13.56227 -12.91925 -12.76700 -12.64395 -12.35337 -12.04745 -11.65444 -11.53822 -11.42345 -11.25570 -11.24523 -11.19917 -11.01010 -10.91345 -10.71353 -10.10489 -9.99134 -9.53781 -9.32022 -9.21164 -8.92903 -7.89516 -6.48635 -4.56678 -0.49664 0.05739 0.88327 1.16362 1.61404 1.79146 2.42529 2.99700 3.13108 3.16720 3.18635 3.75031 3.80461 3.94797 4.08143 4.12052 4.19283 4.32385 4.71441 4.79683 4.96454 5.02692 5.21320 5.23419 5.53619 5.91635 6.07372 6.23437 6.25698 6.31877 6.52922 6.66740 6.93686 7.05293 7.22860 7.56283 7.61166 8.05909 8.22866 8.51015 9.09054 10.62174 Molecular weight = 322.06amu Principal moments of inertia in cm(-1) A = 0.013870 B = 0.004246 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.207577 B = 6592.926505 C = 8190.353328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.227 3.773 3 H 0.065 0.935 4 C -0.543 4.543 5 H 0.082 0.918 6 C 0.086 3.914 7 N -0.877 5.877 8 Si 0.874 3.126 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.257 1.257 12 N -0.637 5.637 13 C 0.490 3.510 14 N -0.593 5.593 15 C 0.386 3.614 16 N -0.571 5.571 17 C 0.245 3.755 18 C -0.035 4.035 19 Cl -0.023 7.023 20 C -0.027 4.027 21 C -0.075 4.075 22 N 0.037 4.963 23 O -0.160 6.160 24 O -0.163 6.163 25 C 0.036 3.964 26 C -0.216 4.216 27 H 0.032 0.968 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.272 0.728 31 H 0.409 0.591 32 H 0.201 0.799 33 H 0.165 0.835 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.566 1.888 16.329 16.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.126 3.874 3 H 0.082 0.918 4 C -0.581 4.581 5 H 0.100 0.900 6 C -0.120 4.120 7 N -0.511 5.511 8 Si 0.700 3.300 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.181 1.181 12 N -0.258 5.258 13 C 0.232 3.768 14 N -0.322 5.322 15 C 0.097 3.903 16 N -0.293 5.293 17 C 0.113 3.887 18 C -0.065 4.065 19 Cl 0.007 6.993 20 C -0.050 4.050 21 C -0.160 4.160 22 N 0.555 4.445 23 O -0.375 6.375 24 O -0.378 6.378 25 C 0.014 3.986 26 C -0.227 4.227 27 H 0.051 0.949 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.247 0.753 32 H 0.217 0.783 33 H 0.182 0.818 34 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -0.996 3.689 15.994 16.444 hybrid contribution 0.481 -0.579 -0.114 0.761 sum -0.515 3.110 15.880 16.190 Atomic orbital electron populations 1.22223 0.97448 1.01079 0.99814 1.19541 0.91642 0.94766 0.81403 0.91760 1.20936 1.46636 0.95809 0.94717 0.90004 1.24941 0.93130 0.98917 0.95034 1.69864 1.42931 1.36589 1.01727 0.86889 0.79852 0.85305 0.77945 1.19707 1.20847 1.18135 1.46357 1.59614 1.12963 1.06822 1.18896 0.83725 0.88716 0.85475 1.68233 1.28113 1.06365 1.29441 1.24900 0.84034 0.99859 0.81550 1.69002 1.21778 1.08873 1.29622 1.18476 0.89563 0.90627 0.90042 1.19829 1.06353 0.91515 0.88807 1.98392 1.96140 1.73846 1.30948 1.20356 0.95042 0.91739 0.97822 1.20240 1.16279 0.82376 0.97151 1.43412 0.97973 1.02752 1.00359 1.94580 1.57917 1.61925 1.23083 1.94526 1.47758 1.73348 1.22149 1.20788 0.86928 0.93492 0.97355 1.18693 1.13023 0.94674 0.96330 0.94930 0.92113 0.93195 0.91790 0.75266 0.78301 0.81770 0.82097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.48 37.16 0.35 -2.36 16 2 C 0.23 4.56 2.25 -69.08 -0.16 4.40 16 3 H 0.06 1.37 4.72 -51.93 -0.25 1.13 16 4 C -0.54 -13.03 9.05 -34.44 -0.31 -13.34 16 5 H 0.08 2.10 8.06 -52.49 -0.42 1.68 16 6 C 0.09 2.20 5.47 -17.82 -0.10 2.10 16 7 N -0.88 -23.97 13.96 55.43 0.77 -23.20 16 8 Si 0.87 19.22 26.99 -169.99 -4.59 14.63 16 9 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.26 -5.38 6.82 56.52 0.39 -4.99 16 12 N -0.64 -10.70 5.13 -54.62 -0.28 -10.98 16 13 C 0.49 7.72 7.52 -154.97 -1.17 6.55 16 14 N -0.59 -9.40 9.33 -13.54 -0.13 -9.53 16 15 C 0.39 5.11 12.22 -92.20 -1.13 3.98 16 16 N -0.57 -7.89 9.97 -12.63 -0.13 -8.02 16 17 C 0.25 3.39 6.61 -84.83 -0.56 2.83 16 18 C -0.04 -0.43 6.32 -39.48 -0.25 -0.68 16 19 Cl -0.02 -0.25 28.58 -51.86 -1.48 -1.73 16 20 C -0.03 -0.31 9.23 -39.89 -0.37 -0.68 16 21 C -0.08 -0.95 6.81 -80.26 -0.55 -1.50 16 22 N 0.04 0.52 4.45 33.81 0.15 0.67 16 23 O -0.16 -2.41 18.38 -29.46 -0.54 -2.95 16 24 O -0.16 -2.31 18.40 -29.46 -0.54 -2.85 16 25 C 0.04 0.46 9.03 -39.61 -0.36 0.10 16 26 C -0.22 -3.03 5.75 -106.69 -0.61 -3.64 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.41 6.16 6.85 -40.82 -0.28 5.88 16 32 H 0.20 1.89 8.06 -52.48 -0.42 1.46 16 33 H 0.16 1.55 7.56 -52.49 -0.40 1.15 16 34 H 0.16 1.86 6.08 -52.49 -0.32 1.54 16 LS Contribution 320.05 15.07 4.82 4.82 Total: -1.00 -27.32 320.05 -9.65 -36.96 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -2.51 Total: 4.39 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -5.20 Total: -2.22 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: 0.39 Total: -51.06 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -1.08 Total: -5.80 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -4.59 Total: 14.63 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -1.48 Total: -1.73 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.32 -9.65 -36.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333692811.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.496 kcal (2) G-P(sol) polarization free energy of solvation -27.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds