Wall clock time and date at job start Sat Apr 11 2020 00:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46980 * 2 1 4 4 C 1.50700 * 109.47166 * 240.00237 * 2 1 3 5 5 H 1.07996 * 120.00119 * 275.00084 * 4 2 1 6 6 C 1.37884 * 119.99779 * 95.00435 * 4 2 1 7 7 N 1.31513 * 119.99490 * 184.91656 * 6 4 2 8 8 Si 1.86799 * 120.00246 * 4.91186 * 6 4 2 9 9 H 1.48499 * 109.47040 * 84.83234 * 8 6 4 10 10 H 1.48492 * 109.47134 * 204.83674 * 8 6 4 11 11 H 1.48498 * 109.47162 * 324.83720 * 8 6 4 12 12 N 1.46501 * 109.47100 * 120.00042 * 2 1 3 13 13 C 1.37858 * 120.00060 * 274.99834 * 12 2 1 14 14 N 1.32636 * 120.91110 * 0.02562 * 13 12 2 15 15 C 1.32348 * 121.48466 * 180.02562 * 14 13 12 16 16 N 1.31181 * 122.97032 * 359.97438 * 15 14 13 17 17 C 1.34107 * 120.46399 * 0.02562 * 16 15 14 18 18 C 1.40265 * 121.99645 * 180.02562 * 17 16 15 19 19 Cl 1.73606 * 120.21661 * 0.02562 * 18 17 16 20 20 C 1.36407 * 119.56229 * 180.02562 * 18 17 16 21 21 C 1.39192 * 121.01766 * 359.95527 * 20 18 17 22 22 N 1.48022 * 119.54676 * 180.02562 * 21 20 18 23 23 O 1.21804 * 120.00532 * 179.97438 * 22 21 20 24 24 O 1.21805 * 119.99785 * 359.97438 * 22 21 20 25 25 C 1.36389 * 120.91562 * 359.97438 * 21 20 18 26 26 C 1.39950 * 119.51904 * 0.02562 * 25 21 20 27 27 H 1.08996 * 109.47380 * 295.03271 * 1 2 3 28 28 H 1.09006 * 109.46986 * 55.03463 * 1 2 3 29 29 H 1.08992 * 109.47087 * 175.02975 * 1 2 3 30 30 H 0.97007 * 119.99636 * 179.97438 * 7 6 4 31 31 H 0.97002 * 119.99716 * 95.00317 * 12 2 1 32 32 H 1.08003 * 118.51084 * 179.97438 * 15 14 13 33 33 H 1.08002 * 119.49223 * 179.97438 * 20 18 17 34 34 H 1.07998 * 120.23923 * 180.02562 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1355 -1.7854 -1.2291 6 6 2.3603 0.0123 -2.3580 7 7 2.7060 -0.6130 -3.4622 8 14 2.3136 1.8793 -2.3173 9 1 3.5991 2.3950 -1.7820 10 1 2.1058 2.3993 -3.6926 11 1 1.1987 2.3276 -1.4449 12 7 2.0183 -0.6906 1.1962 13 6 2.1500 -0.0029 2.3837 14 7 1.8394 1.2841 2.4638 15 6 1.9619 1.9554 3.5978 16 7 2.3922 1.4071 4.7091 17 6 2.7341 0.1107 4.7397 18 6 3.1973 -0.5084 5.9100 19 17 3.3439 0.4022 7.3808 20 6 3.5319 -1.8305 5.8848 21 6 3.4200 -2.5765 4.7150 22 7 3.7916 -4.0093 4.7246 23 8 3.6965 -4.6701 3.7058 24 8 4.1925 -4.5276 5.7514 25 6 2.9717 -2.0059 3.5602 26 6 2.6200 -0.6513 3.5516 27 1 -0.3634 0.4348 0.9311 28 1 -0.3633 0.5890 -0.8422 29 1 -0.3633 -1.0237 -0.0890 30 1 2.9364 -0.1046 -4.2556 31 1 2.2491 -1.6318 1.1525 32 1 1.6956 3.0020 3.6086 33 1 3.8889 -2.3060 6.7864 34 1 2.8887 -2.5951 2.6589 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333692811.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:41:37 Heat of formation + Delta-G solvation = 45.048546 kcal Electronic energy + Delta-G solvation = -24107.622704 eV Core-core repulsion = 20262.277105 eV Total energy + Delta-G solvation = -3845.345599 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 322.062 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.44900 -42.56578 -39.38120 -38.38222 -37.77561 -37.63245 -35.37286 -33.96668 -33.25753 -32.06800 -30.81505 -28.03308 -27.36925 -25.92413 -24.91474 -23.60877 -22.39762 -21.00998 -20.63319 -19.91599 -19.21334 -18.71078 -18.55583 -17.69516 -17.06703 -16.85755 -16.53444 -16.18512 -15.86287 -15.43633 -15.04623 -14.75602 -14.58879 -14.28385 -13.74618 -13.61287 -13.12222 -13.04331 -12.81475 -12.78761 -12.62871 -12.55972 -12.34582 -12.23540 -12.18027 -11.95444 -11.86121 -11.29556 -11.07176 -10.85868 -10.39473 -10.34061 -9.10556 -8.41910 -6.52219 -1.58248 -0.97541 -0.22478 0.10031 0.50070 0.82230 1.32349 1.37564 1.39355 1.46052 1.83332 2.25942 2.71464 2.74001 2.88218 2.96676 3.08018 3.21236 3.28835 3.67734 3.75426 4.06142 4.19750 4.24696 4.39048 4.54293 4.71394 4.75136 4.95976 5.10608 5.19168 5.31903 5.40139 5.58696 5.74667 6.17941 6.38163 6.40943 6.58775 7.09746 7.18122 8.72621 Molecular weight = 322.06amu Principal moments of inertia in cm(-1) A = 0.013870 B = 0.004246 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.207577 B = 6592.926505 C = 8190.353328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.239 3.761 3 H 0.057 0.943 4 C -0.538 4.538 5 H 0.052 0.948 6 C 0.033 3.967 7 N -0.929 5.929 8 Si 0.930 3.070 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.237 1.237 12 N -0.648 5.648 13 C 0.488 3.512 14 N -0.614 5.614 15 C 0.386 3.614 16 N -0.571 5.571 17 C 0.235 3.765 18 C -0.036 4.036 19 Cl -0.009 7.009 20 C -0.015 4.015 21 C -0.072 4.072 22 N 0.037 4.963 23 O -0.190 6.190 24 O -0.150 6.150 25 C 0.038 3.962 26 C -0.218 4.218 27 H 0.048 0.952 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.271 0.729 31 H 0.415 0.585 32 H 0.236 0.764 33 H 0.188 0.812 34 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.825 3.252 18.898 19.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.136 3.864 3 H 0.075 0.925 4 C -0.576 4.576 5 H 0.070 0.930 6 C -0.168 4.168 7 N -0.566 5.566 8 Si 0.754 3.246 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.160 1.160 12 N -0.272 5.272 13 C 0.230 3.770 14 N -0.342 5.342 15 C 0.098 3.902 16 N -0.292 5.292 17 C 0.103 3.897 18 C -0.066 4.066 19 Cl 0.020 6.980 20 C -0.037 4.037 21 C -0.158 4.158 22 N 0.554 4.446 23 O -0.398 6.398 24 O -0.370 6.370 25 C 0.016 3.984 26 C -0.229 4.229 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.254 0.746 32 H 0.252 0.748 33 H 0.205 0.795 34 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -1.269 5.052 18.579 19.296 hybrid contribution 0.597 -1.053 -0.659 1.378 sum -0.673 3.999 17.921 18.374 Atomic orbital electron populations 1.22112 0.96165 1.01241 1.00422 1.19190 0.92431 0.93842 0.80930 0.92479 1.21170 1.45372 0.94747 0.96347 0.92979 1.25699 0.93223 1.03133 0.94739 1.69995 1.45723 1.38251 1.02636 0.85999 0.80292 0.80319 0.78036 1.19808 1.21044 1.16012 1.45791 1.61504 1.13226 1.06630 1.18903 0.83767 0.88979 0.85316 1.68256 1.28692 1.06482 1.30811 1.25586 0.83048 1.01020 0.80570 1.69069 1.21494 1.08853 1.29830 1.18726 0.89707 0.90814 0.90462 1.19839 1.06094 0.91764 0.88918 1.98401 1.96038 1.73583 1.29930 1.20551 0.93800 0.91318 0.98036 1.20291 1.16204 0.81637 0.97643 1.43563 0.97738 1.03176 1.00152 1.94598 1.59342 1.62509 1.23366 1.94508 1.46886 1.73634 1.21968 1.20842 0.86505 0.93195 0.97818 1.18597 1.13391 0.95012 0.95871 0.93276 0.92611 0.93139 0.91928 0.74611 0.74817 0.79515 0.81505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.02 9.48 71.98 0.68 -4.33 16 2 C 0.24 9.41 2.25 44.25 0.10 9.51 16 3 H 0.06 2.35 4.72 -2.39 -0.01 2.34 16 4 C -0.54 -26.29 9.05 25.60 0.23 -26.06 16 5 H 0.05 2.79 8.06 -2.91 -0.02 2.77 16 6 C 0.03 1.73 5.47 84.66 0.46 2.19 16 7 N -0.93 -52.44 13.96 21.45 0.30 -52.15 16 8 Si 0.93 39.53 26.99 68.60 1.85 41.38 16 9 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 10 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.24 -9.21 6.82 99.48 0.68 -8.53 16 12 N -0.65 -21.41 5.13 -326.70 -1.68 -23.08 16 13 C 0.49 14.65 7.52 134.00 1.01 15.66 16 14 N -0.61 -18.12 9.33 -196.76 -1.84 -19.96 16 15 C 0.39 9.14 12.22 180.90 2.21 11.35 16 16 N -0.57 -14.26 9.97 -193.88 -1.93 -16.20 16 17 C 0.23 5.95 6.61 40.12 0.27 6.21 16 18 C -0.04 -0.79 6.32 22.34 0.14 -0.65 16 19 Cl -0.01 -0.17 28.58 -2.72 -0.08 -0.25 16 20 C -0.01 -0.29 9.23 22.07 0.20 -0.09 16 21 C -0.07 -1.70 6.81 36.17 0.25 -1.45 16 22 N 0.04 0.99 4.45 -46.94 -0.21 0.78 16 23 O -0.19 -5.62 18.38 18.88 0.35 -5.28 16 24 O -0.15 -3.93 18.40 18.88 0.35 -3.58 16 25 C 0.04 0.92 9.03 22.25 0.20 1.12 16 26 C -0.22 -5.74 5.75 -21.20 -0.12 -5.87 16 27 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 29 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.27 14.44 8.31 -92.70 -0.77 13.67 16 31 H 0.41 12.55 6.85 -92.71 -0.64 11.91 16 32 H 0.24 3.58 8.06 -2.91 -0.02 3.56 16 33 H 0.19 2.87 7.56 -2.91 -0.02 2.85 16 34 H 0.17 3.79 6.08 -2.91 -0.02 3.77 16 Total: -1.00 -58.56 320.05 3.27 -55.28 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 0.53 Total: 15.45 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: 5.63 Total: 7.60 kcal Atomic # 7 Polarization: -105.25 SS G_CDS: -5.36 Total: -110.60 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.69 Total: -8.86 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 1.85 Total: 41.38 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -0.08 Total: -0.25 kcal Total: -58.56 3.27 -55.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333692811.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.331 kcal (2) G-P(sol) polarization free energy of solvation -58.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds