Wall clock time and date at job start Sat Apr 11 2020 00:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47396 * 2 1 4 4 S 1.81404 * 109.47103 * 119.99610 * 2 1 3 5 5 C 1.81404 * 102.99710 * 295.00191 * 4 2 1 6 6 C 1.50709 * 109.46985 * 179.97438 * 5 4 2 7 7 H 1.07997 * 119.99841 * 359.97438 * 6 5 4 8 8 C 1.37873 * 119.99803 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00280 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99778 * 180.02562 * 8 6 5 11 11 H 1.48492 * 109.47614 * 59.99622 * 10 8 6 12 12 H 1.48500 * 109.46940 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.46929 * 299.99393 * 10 8 6 14 14 C 1.50700 * 109.47259 * 239.99263 * 2 1 3 15 15 N 1.31126 * 126.54789 * 105.00183 * 14 2 1 16 16 C 1.34497 * 105.61562 * 179.97438 * 15 14 2 17 17 C 1.50704 * 126.29092 * 179.97438 * 16 15 14 18 18 C 1.50697 * 109.47260 * 89.99693 * 17 16 15 19 19 C 1.38244 * 119.97201 * 89.99961 * 18 17 16 20 20 C 1.38205 * 120.02298 * 179.97438 * 19 18 17 21 21 C 1.38459 * 119.97412 * 0.24026 * 20 19 18 22 22 F 1.35099 * 120.02759 * 179.72396 * 21 20 19 23 23 C 1.38466 * 119.94836 * 359.48301 * 21 20 19 24 24 C 1.38196 * 119.97140 * 0.53984 * 23 21 20 25 25 N 1.29950 * 107.42324 * 0.24088 * 16 15 14 26 26 O 1.21300 * 110.24815 * 359.57773 * 25 16 15 27 27 H 1.08996 * 109.46645 * 60.00334 * 1 2 3 28 28 H 1.09004 * 109.47028 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46992 * 300.00229 * 1 2 3 30 30 H 1.08998 * 109.47401 * 299.99706 * 5 4 2 31 31 H 1.09000 * 109.47268 * 60.00238 * 5 4 2 32 32 H 0.96992 * 120.00079 * 180.02562 * 9 8 6 33 33 H 1.08994 * 109.46674 * 329.99774 * 17 16 15 34 34 H 1.09000 * 109.46619 * 209.99880 * 17 16 15 35 35 H 1.07999 * 119.98898 * 359.97438 * 19 18 17 36 36 H 1.08002 * 120.00949 * 179.97438 * 20 19 18 37 37 H 1.07997 * 120.00962 * 180.25357 * 23 21 20 38 38 H 1.07999 * 119.98560 * 179.70313 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 16 2.1347 -0.8550 1.4812 5 6 1.5664 0.2155 2.8309 6 6 1.9973 -0.3693 4.1514 7 1 2.5567 -1.2927 4.1761 8 6 1.6764 0.2742 5.3278 9 7 0.9948 1.3986 5.2976 10 14 2.2112 -0.4502 6.9644 11 1 3.6923 -0.5489 7.0019 12 1 1.7458 0.4261 8.0693 13 1 1.6207 -1.8036 7.1232 14 6 2.0324 -0.7106 -1.2304 15 7 2.5498 -0.1522 -2.2980 16 6 2.8518 -1.1672 -3.1272 17 6 3.4730 -1.0469 -4.4950 18 6 4.9741 -1.0955 -4.3710 19 6 5.6332 -2.3091 -4.4319 20 6 7.0099 -2.3548 -4.3189 21 6 7.7285 -1.1850 -4.1395 22 9 9.0737 -1.2289 -4.0233 23 6 7.0676 0.0306 -4.0843 24 6 5.6910 0.0737 -4.1972 25 7 2.5043 -2.2702 -2.5346 26 8 2.0363 -2.0302 -1.4416 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 2.0001 1.2087 2.7141 31 1 0.4791 0.2883 2.8037 32 1 0.7694 1.8514 6.1252 33 1 3.1762 -0.1005 -4.9468 34 1 3.1333 -1.8713 -5.1219 35 1 5.0722 -3.2219 -4.5679 36 1 7.5246 -3.3032 -4.3661 37 1 7.6275 0.9441 -3.9486 38 1 5.1749 1.0212 -4.1494 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413009171.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:40:08 Heat of formation + Delta-G solvation = 34.361755 kcal Electronic energy + Delta-G solvation = -23069.324862 eV Core-core repulsion = 19341.472689 eV Total energy + Delta-G solvation = -3727.852174 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.089 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.14683 -45.52554 -39.51813 -36.13810 -34.88104 -33.24858 -32.67968 -31.46136 -30.81180 -28.59871 -27.58903 -24.90274 -23.60795 -23.34789 -23.19089 -22.12495 -20.89405 -18.12551 -17.90558 -17.52449 -16.72990 -16.49546 -15.92294 -15.84965 -15.62707 -15.39937 -14.79752 -14.48045 -14.39765 -13.93930 -13.74213 -13.50153 -13.17791 -12.75332 -12.54982 -12.43863 -12.42034 -12.30212 -12.23454 -11.77523 -11.56154 -11.33608 -11.29884 -11.00575 -10.88733 -10.79631 -10.17709 -9.83268 -9.63596 -9.41857 -9.02635 -8.92197 -8.67913 -6.93508 -6.27024 -4.31899 0.74241 0.92629 1.12177 2.01033 2.41042 2.81104 3.17015 3.25036 3.28426 3.32297 3.54698 3.76319 3.96778 4.01111 4.30145 4.38325 4.40228 4.59630 4.74149 4.93432 4.95402 5.02185 5.10692 5.18960 5.29574 5.34828 5.57933 5.59984 5.69501 5.77604 5.81224 5.87242 5.90228 5.97226 6.16251 6.22585 6.56126 6.96856 6.98172 7.67140 7.90234 8.18681 8.69411 9.31935 10.84026 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.014610 B = 0.002682 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.985525 B =10438.483644 C =11642.501566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.015 3.985 3 H 0.124 0.876 4 S -0.265 6.265 5 C 0.091 3.909 6 C -0.516 4.516 7 H 0.068 0.932 8 C 0.068 3.932 9 N -0.891 5.891 10 Si 0.907 3.093 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.273 1.273 14 C 0.225 3.775 15 N -0.480 5.480 16 C 0.169 3.831 17 C 0.017 3.983 18 C -0.099 4.099 19 C -0.076 4.076 20 C -0.154 4.154 21 C 0.100 3.900 22 F -0.140 7.140 23 C -0.153 4.153 24 C -0.071 4.071 25 N -0.384 5.384 26 O 0.093 5.907 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.040 0.960 31 H 0.043 0.957 32 H 0.267 0.733 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.125 -2.612 -21.271 22.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 H 0.142 0.858 4 S -0.038 6.038 5 C -0.055 4.055 6 C -0.556 4.556 7 H 0.086 0.914 8 C -0.136 4.136 9 N -0.529 5.529 10 Si 0.734 3.266 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.198 1.198 14 C 0.004 3.996 15 N -0.215 5.215 16 C -0.105 4.105 17 C -0.022 4.022 18 C -0.101 4.101 19 C -0.094 4.094 20 C -0.173 4.173 21 C 0.081 3.919 22 F -0.118 7.118 23 C -0.172 4.172 24 C -0.089 4.089 25 N -0.091 5.091 26 O 0.034 5.966 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.104 0.896 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.125 0.875 34 H 0.121 0.879 35 H 0.152 0.848 36 H 0.155 0.845 37 H 0.156 0.844 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.911 -3.868 -21.740 22.859 hybrid contribution -0.140 0.894 1.115 1.436 sum 5.772 -2.974 -20.625 21.623 Atomic orbital electron populations 1.22119 0.90625 1.04114 1.03535 1.21533 0.99583 1.00905 0.89492 0.85809 1.87110 1.76146 1.40817 0.99770 1.21198 0.99096 0.94566 0.90654 1.20583 1.36897 1.09470 0.88607 0.91401 1.24931 0.94637 0.94748 0.99284 1.69927 1.38149 1.16406 1.28428 0.86394 0.79262 0.79074 0.81856 1.19863 1.21009 1.19813 1.27933 0.94294 0.81118 0.96261 1.71876 1.17381 1.30395 1.01803 1.25511 1.00865 0.84203 0.99878 1.18807 0.90036 1.05640 0.87697 1.19635 0.94423 0.93634 1.02368 1.20958 0.93355 0.97774 0.97334 1.21139 0.94726 0.97646 1.03814 1.17783 0.77112 0.94829 1.02162 1.91507 1.29605 1.97341 1.93393 1.21173 0.95272 0.97052 1.03720 1.20988 0.92873 0.98613 0.96419 1.74607 1.15822 1.23934 0.94748 1.85355 1.58112 1.26668 1.26498 0.91906 0.90731 0.89557 0.94195 0.93834 0.92302 0.87460 0.87943 0.84758 0.84538 0.84436 0.84435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.08 37.16 0.34 -1.66 16 2 C 0.01 0.24 3.32 -27.88 -0.09 0.15 16 3 H 0.12 1.92 8.14 -51.93 -0.42 1.49 16 4 S -0.26 -5.42 20.98 -107.50 -2.26 -7.67 16 5 C 0.09 2.20 5.39 36.01 0.19 2.39 16 6 C -0.52 -13.88 9.13 -34.44 -0.31 -14.19 16 7 H 0.07 1.84 7.71 -52.49 -0.40 1.43 16 8 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 9 N -0.89 -24.80 13.29 55.43 0.74 -24.06 16 10 Si 0.91 20.74 29.54 -169.99 -5.02 15.72 16 11 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 14 C 0.22 3.59 7.08 -13.06 -0.09 3.49 16 15 N -0.48 -7.27 11.55 -9.87 -0.11 -7.38 16 16 C 0.17 2.30 7.45 -156.36 -1.17 1.13 16 17 C 0.02 0.16 5.97 -29.03 -0.17 -0.02 16 18 C -0.10 -0.98 5.12 -104.62 -0.54 -1.51 16 19 C -0.08 -0.73 9.70 -39.59 -0.38 -1.11 16 20 C -0.15 -1.50 10.03 -39.51 -0.40 -1.90 16 21 C 0.10 1.07 7.30 -39.42 -0.29 0.78 16 22 F -0.14 -1.59 17.27 2.25 0.04 -1.56 16 23 C -0.15 -1.51 10.03 -39.51 -0.40 -1.90 16 24 C -0.07 -0.68 9.70 -39.59 -0.38 -1.07 16 25 N -0.38 -5.90 12.16 30.90 0.38 -5.53 16 26 O 0.09 1.53 11.21 18.10 0.20 1.74 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.09 1.26 6.92 -51.93 -0.36 0.90 16 30 H 0.04 1.00 8.14 -51.92 -0.42 0.57 16 31 H 0.04 1.06 7.14 -51.92 -0.37 0.69 16 32 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 33 H 0.11 0.80 8.08 -51.93 -0.42 0.38 16 34 H 0.10 0.76 8.08 -51.93 -0.42 0.34 16 35 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 37 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 LS Contribution 353.11 15.07 5.32 5.32 Total: -1.00 -29.52 353.11 -8.99 -38.52 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -4.49 Total: -1.42 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: -3.79 Total: -13.68 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 1.00 Total: -36.97 kcal Atomic # 8 Polarization: 1.53 SS G_CDS: 0.20 Total: 1.74 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: -5.42 SS G_CDS: -2.26 Total: -7.67 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.52 -8.99 -38.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413009171.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.877 kcal (2) G-P(sol) polarization free energy of solvation -29.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds