Wall clock time and date at job start Sat Apr 11 2020 00:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 H 1.09008 * 109.47381 * 52.94465 * 3 2 1 5 5 C 1.53003 * 109.47324 * 172.94235 * 3 2 1 6 6 O 1.42904 * 109.46938 * 54.99807 * 5 3 2 7 7 C 1.35893 * 117.00173 * 180.02562 * 6 5 3 8 8 C 1.38764 * 120.04736 * 359.72212 * 7 6 5 9 9 C 1.38132 * 119.97190 * 179.74948 * 8 7 6 10 10 C 1.38275 * 120.06593 * 0.55173 * 9 8 7 11 11 C 1.38362 * 120.09621 * 359.70309 * 10 9 8 12 12 Cl 1.73595 * 119.98550 * 180.02562 * 11 10 9 13 13 C 1.38285 * 120.02997 * 0.02562 * 11 10 9 14 14 O 1.42901 * 109.47323 * 292.94368 * 3 2 1 15 15 C 1.42895 * 113.99948 * 90.00296 * 14 3 2 16 16 C 1.53006 * 109.47036 * 180.02562 * 15 14 3 17 17 C 1.52997 * 109.47127 * 179.97438 * 16 15 14 18 18 C 1.52996 * 109.47131 * 180.02562 * 17 16 15 19 19 C 1.50698 * 109.47188 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00218 * 359.97438 * 19 18 17 21 21 C 1.37885 * 119.99966 * 180.02562 * 19 18 17 22 22 N 1.31505 * 119.99945 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99899 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47276 * 59.99363 * 23 21 19 25 25 H 1.48496 * 109.47302 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47261 * 299.99694 * 23 21 19 27 27 H 4.18742 * 15.04004 * 359.97438 * 4 2 1 28 28 H 1.08997 * 109.47505 * 175.00437 * 5 3 2 29 29 H 1.09004 * 109.46921 * 295.00290 * 5 3 2 30 30 H 1.08002 * 120.01492 * 0.02592 * 8 7 6 31 31 H 1.07991 * 119.96838 * 180.25476 * 9 8 7 32 32 H 1.07998 * 119.95357 * 179.72071 * 10 9 8 33 33 H 1.08003 * 120.03351 * 180.02562 * 13 11 10 34 34 H 1.09001 * 109.47626 * 60.00343 * 15 14 3 35 35 H 1.09001 * 109.47255 * 300.00084 * 15 14 3 36 36 H 1.09001 * 109.47002 * 299.99477 * 16 15 14 37 37 H 1.08993 * 109.46955 * 59.99914 * 16 15 14 38 38 H 1.09001 * 109.47289 * 299.99953 * 17 16 15 39 39 H 1.09004 * 109.47261 * 59.99697 * 17 16 15 40 40 H 1.09001 * 109.46997 * 299.99574 * 18 17 16 41 41 H 1.08992 * 109.47534 * 59.99520 * 18 17 16 42 42 H 0.97007 * 119.99787 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0097 -0.6185 -0.8202 5 6 3.1554 1.4325 -0.1772 6 8 2.5852 2.2692 0.8312 7 6 2.9370 3.5817 0.8155 8 6 3.8177 4.0534 -0.1475 9 6 4.1701 5.3889 -0.1653 10 6 3.6551 6.2540 0.7826 11 6 2.7809 5.7855 1.7473 12 17 2.1355 6.8742 2.9355 13 6 2.4209 4.4505 1.7653 14 8 3.1226 -0.5243 1.2407 15 6 3.3170 -1.9400 1.2364 16 6 3.8251 -2.3892 2.6079 17 6 4.0327 -3.9050 2.6036 18 6 4.5401 -4.3542 3.9752 19 6 4.7452 -5.8472 3.9707 20 1 4.5343 -6.4185 3.0789 21 6 5.2011 -6.4839 5.1056 22 7 5.4575 -5.7882 6.1918 23 14 5.4546 -8.3345 5.1002 24 1 6.4528 -8.6945 4.0613 25 1 5.9473 -8.7706 6.4315 26 1 4.1658 -9.0099 4.8033 27 1 -1.0500 -0.0008 -0.0002 28 1 4.2417 1.4453 -0.0886 29 1 2.8668 1.8015 -1.1615 30 1 4.2239 3.3776 -0.8856 31 1 4.8523 5.7568 -0.9172 32 1 3.9355 7.2969 0.7698 33 1 1.7382 4.0848 2.5181 34 1 4.0491 -2.2040 0.4731 35 1 2.3710 -2.4360 1.0194 36 1 4.7711 -1.8932 2.8252 37 1 3.0928 -2.1253 3.3709 38 1 3.0865 -4.4007 2.3864 39 1 4.7648 -4.1693 1.8404 40 1 5.4863 -3.8586 4.1928 41 1 3.8078 -4.0900 4.7380 42 1 5.7786 -6.2361 6.9901 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224690252.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:42:01 Heat of formation + Delta-G solvation = -45.206791 kcal Electronic energy + Delta-G solvation = -22820.636867 eV Core-core repulsion = 19178.458189 eV Total energy + Delta-G solvation = -3642.178677 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.112 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.26065 -39.65356 -38.52645 -37.28350 -36.50792 -34.72191 -33.88964 -32.14965 -31.38869 -30.63857 -29.75792 -26.60065 -25.21570 -23.72210 -23.43494 -22.87703 -21.80196 -19.81689 -19.33532 -18.43957 -17.87235 -17.12901 -17.08698 -16.89278 -16.63137 -16.43560 -16.15260 -15.66680 -15.56384 -14.70680 -14.51956 -14.49627 -14.28041 -13.94955 -13.75040 -13.31924 -13.01142 -12.93635 -12.80322 -12.70404 -12.50783 -12.38809 -12.22308 -12.13394 -11.90770 -11.83288 -11.54968 -11.48516 -11.32459 -11.17548 -11.07147 -10.81596 -10.55175 -9.90392 -9.28837 -8.19680 -6.31600 0.08712 0.31977 1.00734 1.40016 1.43702 1.51628 1.61955 1.81403 2.19719 2.41025 2.60704 2.77530 3.13055 3.31416 3.71782 3.87815 4.00391 4.03855 4.06306 4.12702 4.15451 4.25875 4.36451 4.38789 4.42956 4.44983 4.60694 4.66399 4.78472 4.85694 5.00802 5.12951 5.15668 5.24589 5.24940 5.28495 5.32686 5.52864 5.56464 5.74970 5.85560 6.12688 6.24184 6.36097 6.63081 6.85912 7.37747 8.92186 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.016259 B = 0.001861 C = 0.001762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.670216 B =15044.050121 C =15891.661540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.244 4.244 3 C 0.193 3.807 4 H 0.135 0.865 5 C 0.065 3.935 6 O -0.322 6.322 7 C 0.130 3.870 8 C -0.207 4.207 9 C -0.060 4.060 10 C -0.155 4.155 11 C -0.006 4.006 12 Cl -0.068 7.068 13 C -0.170 4.170 14 O -0.387 6.387 15 C 0.068 3.932 16 C -0.110 4.110 17 C -0.093 4.093 18 C 0.021 3.979 19 C -0.544 4.544 20 H 0.064 0.936 21 C -0.005 4.005 22 N -0.935 5.935 23 Si 0.969 3.031 24 H -0.264 1.264 25 H -0.284 1.284 26 H -0.266 1.266 27 H 0.244 0.756 28 H 0.097 0.903 29 H 0.109 0.891 30 H 0.159 0.841 31 H 0.170 0.830 32 H 0.153 0.847 33 H 0.127 0.873 34 H 0.077 0.923 35 H 0.052 0.948 36 H 0.060 0.940 37 H 0.047 0.953 38 H 0.054 0.946 39 H 0.062 0.938 40 H -0.009 1.009 41 H -0.014 1.014 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.528 24.898 -19.982 32.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.244 4.244 3 C 0.136 3.864 4 H 0.152 0.848 5 C -0.009 4.009 6 O -0.236 6.236 7 C 0.084 3.916 8 C -0.225 4.225 9 C -0.078 4.078 10 C -0.174 4.174 11 C -0.033 4.033 12 Cl -0.039 7.039 13 C -0.190 4.190 14 O -0.306 6.306 15 C -0.008 4.008 16 C -0.147 4.147 17 C -0.131 4.131 18 C -0.016 4.016 19 C -0.582 4.582 20 H 0.082 0.918 21 C -0.203 4.203 22 N -0.576 5.576 23 Si 0.793 3.207 24 H -0.189 1.189 25 H -0.210 1.210 26 H -0.191 1.191 27 H 0.260 0.740 28 H 0.115 0.885 29 H 0.127 0.873 30 H 0.177 0.823 31 H 0.187 0.813 32 H 0.171 0.829 33 H 0.145 0.855 34 H 0.095 0.905 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.009 0.991 41 H 0.005 0.995 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.609 24.979 -19.409 32.127 hybrid contribution -0.263 -1.003 0.728 1.267 sum -5.872 23.976 -18.680 30.956 Atomic orbital electron populations 1.25778 0.96940 0.98720 0.97773 1.23977 0.95818 1.02131 1.02518 1.19339 0.83586 0.94415 0.89033 0.84779 1.23216 0.99479 0.86638 0.91579 1.86189 1.67315 1.16653 1.53410 1.19011 0.94366 0.83484 0.94720 1.21712 1.01321 0.98479 1.00993 1.21324 0.97408 0.91674 0.97420 1.21286 0.98625 1.02206 0.95246 1.20712 0.98800 0.90146 0.93606 1.98377 1.85565 1.63182 1.56759 1.20289 1.05432 0.91671 1.01575 1.88093 1.85357 1.22822 1.34368 1.22651 1.00123 0.80020 0.98011 1.21454 1.00979 0.96014 0.96298 1.21349 1.00461 0.93236 0.98044 1.19023 0.94413 0.95115 0.93029 1.21706 1.44079 0.94215 0.98238 0.91784 1.26067 0.95140 1.03916 0.95158 1.70109 1.46450 1.37967 1.03043 0.85451 0.79007 0.78876 0.77410 1.18879 1.20970 1.19113 0.73958 0.88530 0.87305 0.82326 0.81301 0.82908 0.85492 0.90471 0.93017 0.92145 0.93380 0.92746 0.91894 0.99074 0.99548 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.61 19.25 74.32 1.43 -2.18 16 2 C -0.24 -5.64 12.39 31.12 0.39 -5.26 16 3 C 0.19 3.89 2.98 28.79 0.09 3.98 16 4 H 0.14 1.77 7.79 -2.38 -0.02 1.75 16 5 C 0.07 1.06 4.59 71.98 0.33 1.39 16 6 O -0.32 -7.62 9.57 -87.71 -0.84 -8.46 16 7 C 0.13 2.69 6.69 22.50 0.15 2.84 16 8 C -0.21 -2.88 9.04 22.37 0.20 -2.68 16 9 C -0.06 -0.68 10.04 22.25 0.22 -0.45 16 10 C -0.15 -2.15 9.83 22.31 0.22 -1.93 16 11 C -0.01 -0.11 6.32 22.31 0.14 0.03 16 12 Cl -0.07 -1.23 28.95 -2.72 -0.08 -1.31 16 13 C -0.17 -3.73 9.77 22.39 0.22 -3.51 16 14 O -0.39 -10.87 9.92 -144.35 -1.43 -12.30 16 15 C 0.07 1.86 5.73 71.98 0.41 2.27 16 16 C -0.11 -3.91 5.58 30.60 0.17 -3.74 16 17 C -0.09 -3.83 5.15 30.59 0.16 -3.67 16 18 C 0.02 1.16 4.97 29.85 0.15 1.31 16 19 C -0.54 -31.49 9.11 25.60 0.23 -31.26 16 20 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 21 C -0.01 -0.31 5.46 84.66 0.46 0.15 16 22 N -0.94 -58.35 13.29 21.45 0.28 -58.06 16 23 Si 0.97 44.65 29.54 68.60 2.03 46.68 16 24 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 25 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 26 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 27 H 0.24 3.14 7.80 -4.42 -0.03 3.11 16 28 H 0.10 1.26 7.65 -2.39 -0.02 1.24 16 29 H 0.11 1.08 7.67 -2.38 -0.02 1.06 16 30 H 0.16 1.32 6.30 -2.91 -0.02 1.30 16 31 H 0.17 0.70 8.06 -2.91 -0.02 0.68 16 32 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 33 H 0.13 2.98 8.06 -2.91 -0.02 2.96 16 34 H 0.08 1.71 8.09 -2.39 -0.02 1.69 16 35 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 40 H -0.01 -0.54 8.14 -2.39 -0.02 -0.55 16 41 H -0.01 -0.83 8.14 -2.39 -0.02 -0.84 16 42 H 0.26 15.42 8.31 -92.70 -0.77 14.65 16 Total: -1.00 -74.33 381.99 5.93 -68.40 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: 0.99 Total: 7.78 kcal Atomic # 6 Polarization: -47.70 SS G_CDS: 4.97 Total: -42.73 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: 0.28 Total: -58.06 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -2.27 Total: -20.76 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -0.08 Total: -1.31 kcal Total: -74.33 5.93 -68.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224690252.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.192 kcal (2) G-P(sol) polarization free energy of solvation -74.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds