Wall clock time and date at job start Sat Apr 11 2020 00:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30388 * 126.18293 * 2 1 4 4 N 1.28666 * 109.53638 * 179.73115 * 3 2 1 5 5 C 1.31294 * 109.23757 * 0.44690 * 4 3 2 6 6 C 1.47724 * 126.38521 * 179.82758 * 5 4 3 7 7 C 1.39700 * 120.01724 * 179.41371 * 6 5 4 8 8 C 1.37655 * 119.98065 * 179.69600 * 7 6 5 9 9 C 1.39558 * 120.01529 * 0.57796 * 8 7 6 10 10 C 1.48154 * 119.98575 * 179.69567 * 9 8 7 11 11 C 1.39367 * 120.16837 * 129.74263 * 10 9 8 12 12 C 1.37985 * 119.93686 * 179.75356 * 11 10 9 13 13 C 1.38462 * 120.28030 * 0.53208 * 12 11 10 14 14 C 1.38111 * 120.34126 * 359.74361 * 13 12 11 15 15 C 1.38753 * 120.05426 * 359.97438 * 14 13 12 16 16 O 1.35643 * 120.14143 * 179.97438 * 15 14 13 17 17 C 1.34812 * 117.00047 * 354.40215 * 16 15 14 18 18 H 1.08001 * 119.99728 * 5.06257 * 17 16 15 19 19 C 1.38646 * 120.00519 * 185.05972 * 17 16 15 20 20 N 1.31561 * 119.99551 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00460 * 179.97438 * 19 17 16 22 22 H 1.48509 * 109.47101 * 60.00075 * 21 19 17 23 23 H 1.48496 * 109.47427 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47172 * 300.00479 * 21 19 17 25 25 C 1.39562 * 120.03599 * 359.72047 * 9 8 7 26 26 C 1.37654 * 120.01815 * 359.97438 * 25 9 8 27 27 O 1.34420 * 126.17816 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.47162 * 269.99835 * 1 2 3 29 29 H 1.09000 * 109.46939 * 29.99632 * 1 2 3 30 30 H 1.09003 * 109.47357 * 149.99723 * 1 2 3 31 31 H 1.08002 * 120.00928 * 359.97202 * 7 6 5 32 32 H 1.07994 * 119.99409 * 180.27866 * 8 7 6 33 33 H 1.08003 * 120.03041 * 0.02562 * 11 10 9 34 34 H 1.08004 * 119.85709 * 180.30346 * 12 11 10 35 35 H 1.08002 * 119.82909 * 179.76792 * 13 12 11 36 36 H 1.08000 * 119.96986 * 180.02562 * 14 13 12 37 37 H 0.96996 * 119.99876 * 179.97438 * 20 19 17 38 38 H 1.07999 * 119.99334 * 180.02562 * 25 9 8 39 39 H 1.07993 * 120.00954 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2768 1.0524 0.0000 4 7 3.5095 0.6838 0.0057 5 6 3.5689 -0.6278 -0.0001 6 6 4.7966 -1.4494 -0.0002 7 6 4.7046 -2.8433 0.0056 8 6 5.8490 -3.6083 -0.0008 9 6 7.1009 -2.9915 -0.0008 10 6 8.3322 -3.8154 -0.0009 11 6 9.3427 -3.5647 -0.9274 12 6 10.4897 -4.3317 -0.9198 13 6 10.6373 -5.3579 -0.0021 14 6 9.6408 -5.6202 0.9175 15 6 8.4841 -4.8539 0.9263 16 8 7.5041 -5.1103 1.8283 17 6 7.6628 -6.1951 2.6128 18 1 8.5772 -6.7678 2.5638 19 6 6.6524 -6.5757 3.4825 20 7 5.5383 -5.8783 3.5419 21 14 6.8720 -8.0792 4.5690 22 1 8.0505 -7.8843 5.4515 23 1 5.6567 -8.2710 5.4004 24 1 7.0836 -9.2779 3.7184 25 6 7.1936 -1.5990 -0.0002 26 6 6.0501 -0.8327 -0.0002 27 8 2.3005 -1.0850 -0.0005 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5139 31 1 3.7358 -3.3207 0.0105 32 1 5.7781 -4.6859 -0.0009 33 1 9.2300 -2.7679 -1.6477 34 1 11.2741 -4.1330 -1.6352 35 1 11.5365 -5.9561 -0.0052 36 1 9.7624 -6.4219 1.6309 37 1 4.8313 -6.1447 4.1501 38 1 8.1628 -1.1224 -0.0007 39 1 6.1220 0.2449 0.0006 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239020472.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:42:09 Heat of formation + Delta-G solvation = 60.732675 kcal Electronic energy + Delta-G solvation = -25334.001380 eV Core-core repulsion = 21595.309089 eV Total energy + Delta-G solvation = -3738.692291 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.110 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.03801 -39.58640 -38.32671 -36.45549 -36.08575 -33.56538 -32.43921 -31.92916 -30.73142 -29.54517 -28.92439 -27.31114 -25.49153 -24.20108 -23.07211 -22.14335 -21.90300 -21.14179 -20.46564 -18.08888 -17.64725 -17.34821 -17.16869 -16.15664 -15.56292 -15.09295 -14.72504 -14.62440 -14.21380 -14.14112 -13.71915 -13.57574 -13.54706 -13.34724 -13.05238 -12.92669 -12.76287 -12.44931 -12.28144 -11.87795 -11.78852 -11.72389 -11.46329 -11.06708 -10.97269 -10.89946 -10.69730 -10.63880 -10.52301 -9.94432 -9.47955 -8.95433 -8.63191 -8.59141 -7.88057 -7.24056 -6.56154 -4.14718 0.60592 1.63721 1.79136 2.11498 2.25213 2.26604 2.66375 3.06768 3.07320 3.10246 3.82621 3.86642 4.09588 4.37125 4.47044 4.81960 4.97534 5.05212 5.08292 5.15752 5.17232 5.24350 5.31381 5.42823 5.49470 5.55729 5.69457 5.70246 5.75235 5.91494 5.94306 6.12680 6.17997 6.40248 6.49912 6.57773 6.67325 6.81716 6.86718 7.01609 7.07999 7.23298 7.25003 7.33104 7.67286 7.87017 8.33799 8.88562 9.55035 10.60040 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.011299 B = 0.003756 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.395677 B = 7453.913027 C = 9647.884929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.147 3.853 3 N -0.288 5.288 4 N -0.291 5.291 5 C 0.233 3.767 6 C -0.056 4.056 7 C -0.073 4.073 8 C -0.084 4.084 9 C 0.026 3.974 10 C -0.148 4.148 11 C -0.055 4.055 12 C -0.216 4.216 13 C -0.066 4.066 14 C -0.233 4.233 15 C 0.167 3.833 16 O -0.162 6.162 17 C -0.396 4.396 18 H 0.092 0.908 19 C 0.044 3.956 20 N -0.853 5.853 21 Si 0.939 3.061 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.269 1.269 25 C -0.124 4.124 26 C -0.066 4.066 27 O -0.221 6.221 28 H 0.097 0.903 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.127 0.873 32 H 0.136 0.864 33 H 0.115 0.885 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.130 0.870 37 H 0.272 0.728 38 H 0.130 0.870 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.602 5.390 -7.458 9.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.063 4.063 3 N -0.136 5.136 4 N -0.138 5.138 5 C 0.027 3.973 6 C -0.058 4.058 7 C -0.092 4.092 8 C -0.102 4.102 9 C 0.025 3.975 10 C -0.149 4.149 11 C -0.073 4.073 12 C -0.235 4.235 13 C -0.084 4.084 14 C -0.252 4.252 15 C 0.112 3.888 16 O -0.064 6.064 17 C -0.472 4.472 18 H 0.110 0.890 19 C -0.161 4.161 20 N -0.487 5.487 21 Si 0.764 3.236 22 H -0.195 1.195 23 H -0.202 1.202 24 H -0.194 1.194 25 C -0.142 4.142 26 C -0.086 4.086 27 O -0.101 6.101 28 H 0.116 0.884 29 H 0.123 0.877 30 H 0.110 0.890 31 H 0.145 0.855 32 H 0.154 0.846 33 H 0.133 0.867 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.147 0.853 37 H 0.081 0.919 38 H 0.148 0.852 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.738 6.762 -7.243 10.590 hybrid contribution -0.199 -2.081 0.751 2.221 sum -3.937 4.681 -6.491 8.919 Atomic orbital electron populations 1.20306 0.80364 1.05458 1.05131 1.27923 0.97736 0.79680 1.00975 1.74320 0.96299 1.25711 1.17222 1.74723 1.11627 1.08413 1.19043 1.25667 0.83423 0.90317 0.97930 1.17185 0.86333 0.91453 1.10861 1.21073 0.99469 0.91392 0.97295 1.21195 0.90622 1.00837 0.97515 1.18913 0.92665 0.92372 0.93506 1.17835 0.95953 1.00456 1.00700 1.20739 0.92212 0.97964 0.96366 1.20539 0.98997 1.00641 1.03312 1.20858 0.97336 0.96100 0.94108 1.21131 0.95375 1.04735 1.03992 1.19305 0.88883 0.92124 0.88528 1.83968 1.38708 1.42934 1.40833 1.21306 1.03744 1.03829 1.18341 0.89030 1.25266 0.94480 0.98910 0.97494 1.70027 1.05223 1.37887 1.35554 0.85805 0.78275 0.80120 0.79431 1.19452 1.20234 1.19437 1.21107 0.98048 0.92755 1.02259 1.20905 0.90010 1.00189 0.97453 1.84853 1.17327 1.37871 1.70010 0.88444 0.87739 0.88977 0.85548 0.84588 0.86661 0.87324 0.87329 0.85275 0.91851 0.85170 0.84871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.40 10.51 36.01 0.38 -0.02 16 2 C 0.15 1.98 8.47 -12.89 -0.11 1.87 16 3 N -0.29 -4.65 12.22 32.58 0.40 -4.25 16 4 N -0.29 -5.13 11.91 32.06 0.38 -4.75 16 5 C 0.23 3.99 7.98 -13.91 -0.11 3.88 16 6 C -0.06 -0.97 5.88 -104.93 -0.62 -1.59 16 7 C -0.07 -1.29 9.71 -39.25 -0.38 -1.67 16 8 C -0.08 -1.63 8.76 -39.30 -0.34 -1.97 16 9 C 0.03 0.50 5.28 -104.84 -0.55 -0.06 16 10 C -0.15 -2.92 5.48 -104.73 -0.57 -3.50 16 11 C -0.05 -0.92 9.51 -39.25 -0.37 -1.29 16 12 C -0.22 -3.48 10.03 -39.59 -0.40 -3.87 16 13 C -0.07 -1.13 10.03 -39.55 -0.40 -1.52 16 14 C -0.23 -4.74 9.16 -39.44 -0.36 -5.10 16 15 C 0.17 3.76 6.55 -38.72 -0.25 3.50 16 16 O -0.16 -4.25 8.09 0.43 0.00 -4.25 16 17 C -0.40 -10.36 9.49 30.88 0.29 -10.07 16 18 H 0.09 2.22 5.21 -52.49 -0.27 1.95 16 19 C 0.04 1.14 5.49 -17.52 -0.10 1.05 16 20 N -0.85 -23.58 13.67 55.48 0.76 -22.82 16 21 Si 0.94 19.58 29.55 -169.99 -5.02 14.56 16 22 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 23 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 24 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 25 C -0.12 -2.04 9.49 -39.30 -0.37 -2.41 16 26 C -0.07 -1.07 9.68 -39.25 -0.38 -1.45 16 27 O -0.22 -3.46 10.66 3.93 0.04 -3.41 16 28 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.13 2.07 7.92 -52.49 -0.42 1.66 16 32 H 0.14 2.84 7.67 -52.49 -0.40 2.44 16 33 H 0.12 1.62 8.04 -52.48 -0.42 1.20 16 34 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 35 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.13 2.62 5.64 -52.49 -0.30 2.32 16 37 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 38 H 0.13 1.85 8.04 -52.49 -0.42 1.42 16 39 H 0.13 1.93 7.85 -52.49 -0.41 1.52 16 LS Contribution 348.16 15.07 5.25 5.25 Total: -1.00 -30.91 348.16 -6.74 -37.64 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -3.89 Total: 6.26 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: -4.65 Total: -24.22 kcal Atomic # 7 Polarization: -33.36 SS G_CDS: 1.54 Total: -31.82 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: 0.05 Total: -7.66 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.91 -6.74 -37.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239020472.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.376 kcal (2) G-P(sol) polarization free energy of solvation -30.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds