Wall clock time and date at job start Sat Apr 11 2020 00:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31248 * 119.79772 * 2 1 4 4 C 1.33089 * 121.71805 * 179.97438 * 3 2 1 5 5 C 1.47780 * 119.45989 * 180.02562 * 4 3 2 6 6 C 1.39780 * 120.06759 * 179.75247 * 5 4 3 7 7 C 1.37650 * 119.93180 * 179.74136 * 6 5 4 8 8 C 1.39214 * 120.06738 * 0.53585 * 7 6 5 9 9 N 1.39265 * 119.93319 * 179.74139 * 8 7 6 10 10 C 1.39173 * 120.13770 * 359.71371 * 8 7 6 11 11 C 1.50696 * 119.97024 * 180.02562 * 10 8 7 12 12 F 1.39893 * 109.47609 * 180.02562 * 11 10 8 13 13 F 1.39901 * 109.47324 * 300.02667 * 11 10 8 14 14 F 1.39908 * 109.46774 * 60.02412 * 11 10 8 15 15 C 1.37697 * 120.06790 * 0.02809 * 10 8 7 16 16 C 1.39994 * 121.08020 * 0.02785 * 4 3 2 17 17 C 1.36539 * 119.46832 * 0.25556 * 16 4 3 18 18 C 1.40955 * 119.79560 * 179.97438 * 2 1 3 19 19 C 1.41016 * 120.55110 * 359.97438 * 18 2 1 20 20 H 1.08008 * 119.99090 * 24.95054 * 19 18 2 21 21 C 1.39972 * 120.00379 * 204.95187 * 19 18 2 22 22 N 1.30818 * 120.00430 * 14.41625 * 21 19 18 23 23 Si 1.86804 * 119.99897 * 194.42340 * 21 19 18 24 24 H 1.48490 * 109.47386 * 89.99586 * 23 21 19 25 25 H 1.48505 * 109.46790 * 209.99825 * 23 21 19 26 26 H 1.48498 * 109.46979 * 329.99236 * 23 21 19 27 27 H 1.08996 * 109.47087 * 89.99500 * 1 2 3 28 28 H 1.09006 * 109.47039 * 209.99856 * 1 2 3 29 29 H 1.08999 * 109.47091 * 329.99661 * 1 2 3 30 30 H 1.08000 * 120.03604 * 359.97303 * 6 5 4 31 31 H 1.07996 * 119.96789 * 180.27017 * 7 6 5 32 32 H 0.96999 * 119.99807 * 179.97438 * 9 8 7 33 33 H 0.96995 * 120.00159 * 359.97275 * 9 8 7 34 34 H 1.08000 * 120.03532 * 179.97438 * 15 10 8 35 35 H 1.08003 * 120.26667 * 179.97438 * 16 4 3 36 36 H 1.08000 * 120.79341 * 179.72948 * 17 16 4 37 37 H 0.96994 * 120.00589 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1592 1.1389 0.0000 4 6 3.4894 1.1835 0.0005 5 6 4.1727 2.4939 0.0011 6 6 5.5691 2.5556 0.0068 7 6 6.2027 3.7776 0.0019 8 6 5.4541 4.9513 0.0025 9 7 6.0980 6.1862 0.0030 10 6 4.0636 4.8933 0.0021 11 6 3.2570 6.1662 0.0021 12 9 1.8933 5.8543 0.0022 13 9 3.5645 6.9132 1.1444 14 9 3.5645 6.9132 -1.1402 15 6 3.4240 3.6739 0.0016 16 6 4.2519 0.0095 0.0005 17 6 3.6207 -1.2013 -0.0054 18 6 2.2074 -1.2232 0.0005 19 6 1.5098 -2.4487 0.0016 20 1 0.5054 -2.4985 -0.3926 21 6 2.1187 -3.6004 0.5135 22 7 3.2025 -3.4998 1.2392 23 14 1.3839 -5.2811 0.1603 24 1 1.9725 -5.8260 -1.0894 25 1 1.6821 -6.1988 1.2891 26 1 -0.0870 -5.1545 0.0005 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 6.1504 1.6454 0.0113 31 1 7.2815 3.8259 0.0020 32 1 5.5774 7.0046 0.0031 33 1 7.0671 6.2279 0.0033 34 1 2.3449 3.6295 0.0016 35 1 5.3307 0.0610 0.0005 36 1 4.1879 -2.1204 -0.0099 37 1 3.6248 -4.2979 1.5936 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244352554.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:43:09 Heat of formation + Delta-G solvation = -127.392375 kcal Electronic energy + Delta-G solvation = -26246.191690 eV Core-core repulsion = 21957.484944 eV Total energy + Delta-G solvation = -4288.706746 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.099 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.21610 -48.72094 -48.65235 -40.85617 -39.84636 -36.37462 -35.46381 -33.58195 -32.72620 -32.47816 -29.92936 -28.74784 -27.15901 -26.18912 -24.01696 -23.49307 -22.30190 -21.66603 -19.56422 -19.52640 -19.31397 -19.05998 -17.92878 -17.59487 -17.29421 -16.44226 -16.40705 -15.69253 -15.60997 -15.42649 -15.11269 -14.99431 -14.97020 -14.81991 -14.74681 -14.66711 -14.50502 -14.24805 -13.74893 -13.65738 -13.36966 -13.29133 -13.03608 -12.93120 -12.64335 -12.48484 -12.15431 -12.08587 -11.67263 -11.50867 -11.16683 -10.17203 -10.13811 -9.88448 -9.51927 -8.72610 -8.34078 -6.33544 0.06397 0.23416 0.98687 1.18000 1.41161 1.54123 1.57540 1.67271 2.18360 2.53605 2.69974 2.87251 2.92264 3.02154 3.44925 3.75322 3.77544 3.91098 4.25029 4.26947 4.50569 4.59330 4.63388 4.71883 4.89007 4.99582 5.02753 5.05736 5.10176 5.14690 5.29895 5.31701 5.53788 5.65946 5.75322 5.90271 6.02671 6.09964 6.35076 6.51925 6.75080 6.81707 6.82901 7.77268 8.22614 Molecular weight = 322.10amu Principal moments of inertia in cm(-1) A = 0.024989 B = 0.003067 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.236874 B = 9128.049750 C =10004.575589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.015 4.015 3 N -0.470 5.470 4 C 0.008 3.992 5 C -0.075 4.075 6 C -0.045 4.045 7 C -0.184 4.184 8 C 0.256 3.744 9 N -0.856 5.856 10 C -0.279 4.279 11 C 0.518 3.482 12 F -0.184 7.184 13 F -0.178 7.178 14 F -0.178 7.178 15 C -0.030 4.030 16 C -0.137 4.137 17 C -0.159 4.159 18 C 0.040 3.960 19 C -0.461 4.461 20 H 0.092 0.908 21 C 0.034 3.966 22 N -0.814 5.814 23 Si 0.987 3.013 24 H -0.262 1.262 25 H -0.269 1.269 26 H -0.254 1.254 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.144 0.856 31 H 0.168 0.832 32 H 0.399 0.601 33 H 0.419 0.581 34 H 0.122 0.878 35 H 0.130 0.870 36 H 0.119 0.881 37 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.790 12.211 -1.773 14.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.159 4.159 3 N -0.179 5.179 4 C -0.127 4.127 5 C -0.078 4.078 6 C -0.065 4.065 7 C -0.206 4.206 8 C 0.147 3.853 9 N -0.395 5.395 10 C -0.285 4.285 11 C 0.464 3.536 12 F -0.165 7.165 13 F -0.160 7.160 14 F -0.159 7.159 15 C -0.049 4.049 16 C -0.157 4.157 17 C -0.184 4.184 18 C 0.035 3.965 19 C -0.490 4.490 20 H 0.110 0.890 21 C -0.183 4.183 22 N -0.438 5.438 23 Si 0.807 3.193 24 H -0.186 1.186 25 H -0.193 1.193 26 H -0.178 1.178 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.162 0.838 31 H 0.186 0.814 32 H 0.228 0.772 33 H 0.251 0.749 34 H 0.140 0.860 35 H 0.148 0.852 36 H 0.137 0.863 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.487 12.886 -1.620 14.517 hybrid contribution 0.044 -1.131 0.051 1.133 sum 6.531 11.755 -1.569 13.539 Atomic orbital electron populations 1.20238 0.89113 1.01592 1.01278 1.21515 0.96785 0.87968 1.09662 1.66847 1.09510 1.30420 1.11074 1.19245 0.88947 0.92120 1.12431 1.18392 0.93294 0.90415 1.05697 1.21385 0.92440 0.98942 0.93718 1.20739 1.00969 0.89108 1.09814 1.17447 0.88928 0.88202 0.90748 1.42464 1.10614 1.03697 1.82764 1.19312 0.93285 0.91969 1.23956 1.18147 0.77700 0.84302 0.73492 1.93153 1.34175 1.92949 1.96241 1.93184 1.92708 1.78798 1.51281 1.93186 1.92707 1.78791 1.51244 1.20736 1.00256 0.90174 0.93771 1.21548 1.00064 0.92717 1.01379 1.21425 0.94908 0.97203 1.04843 1.18762 0.93227 0.94085 0.90391 1.19893 1.02028 0.92627 1.34414 0.89036 1.26887 0.94547 1.05200 0.91648 1.69821 1.17686 1.33549 1.22772 0.85106 0.79906 0.75303 0.78946 1.18643 1.19339 1.17767 0.92067 0.91383 0.92382 0.83818 0.81448 0.77151 0.74941 0.85994 0.85192 0.86299 0.89613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.73 9.58 71.24 0.68 -2.05 16 2 C -0.02 -0.78 6.86 43.31 0.30 -0.48 16 3 N -0.47 -23.34 9.30 -171.02 -1.59 -24.93 16 4 C 0.01 0.37 6.74 41.90 0.28 0.65 16 5 C -0.08 -2.88 5.88 -20.02 -0.12 -3.00 16 6 C -0.05 -1.34 9.40 22.50 0.21 -1.13 16 7 C -0.18 -4.25 9.87 22.37 0.22 -4.03 16 8 C 0.26 6.23 6.66 38.42 0.26 6.49 16 9 N -0.86 -14.23 8.81 -51.28 -0.45 -14.68 16 10 C -0.28 -8.43 5.38 -19.77 -0.11 -8.53 16 11 C 0.52 14.49 2.80 71.23 0.20 14.69 16 12 F -0.18 -5.78 15.96 44.97 0.72 -5.06 16 13 F -0.18 -4.60 16.23 44.97 0.73 -3.87 16 14 F -0.18 -4.55 16.24 44.97 0.73 -3.82 16 15 C -0.03 -1.09 8.95 22.51 0.20 -0.89 16 16 C -0.14 -6.26 9.38 22.30 0.21 -6.05 16 17 C -0.16 -8.07 8.73 22.64 0.20 -7.88 16 18 C 0.04 2.09 5.59 -21.17 -0.12 1.98 16 19 C -0.46 -23.10 8.15 23.37 0.19 -22.91 16 20 H 0.09 4.33 6.83 -2.91 -0.02 4.31 16 21 C 0.03 1.59 5.22 85.26 0.45 2.03 16 22 N -0.81 -39.69 10.83 21.83 0.24 -39.45 16 23 Si 0.99 35.27 29.58 68.60 2.03 37.30 16 24 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 25 H -0.27 -9.21 7.11 99.48 0.71 -8.50 16 26 H -0.25 -8.80 7.11 99.48 0.71 -8.09 16 27 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.07 2.79 6.75 -2.38 -0.02 2.78 16 29 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.14 3.80 6.14 -2.91 -0.02 3.78 16 31 H 0.17 2.49 8.06 -2.91 -0.02 2.47 16 32 H 0.40 6.57 6.22 -92.71 -0.58 5.99 16 33 H 0.42 4.23 8.83 -92.71 -0.82 3.41 16 34 H 0.12 4.92 6.60 -2.91 -0.02 4.90 16 35 H 0.13 4.93 6.14 -2.91 -0.02 4.91 16 36 H 0.12 6.15 6.18 -2.91 -0.02 6.13 16 37 H 0.29 12.82 8.30 -92.71 -0.77 12.05 16 Total: -1.00 -60.51 323.79 5.24 -55.28 By element: Atomic # 1 Polarization: 30.56 SS G_CDS: -0.22 Total: 30.35 kcal Atomic # 6 Polarization: -34.16 SS G_CDS: 3.05 Total: -31.11 kcal Atomic # 7 Polarization: -77.26 SS G_CDS: -1.81 Total: -79.06 kcal Atomic # 9 Polarization: -14.92 SS G_CDS: 2.18 Total: -12.75 kcal Atomic # 14 Polarization: 35.27 SS G_CDS: 2.03 Total: 37.30 kcal Total: -60.51 5.24 -55.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244352554.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.116 kcal (2) G-P(sol) polarization free energy of solvation -60.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds