Wall clock time and date at job start Sat Apr 11 2020 00:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31943 * 120.49736 * 2 1 4 4 C 1.32720 * 120.89770 * 180.30808 * 3 2 1 5 5 C 1.48169 * 119.04084 * 179.67600 * 4 3 2 6 6 C 1.39463 * 120.13018 * 359.71332 * 5 4 3 7 7 C 1.37982 * 119.86073 * 179.69386 * 6 5 4 8 8 C 1.38348 * 120.13373 * 0.57539 * 7 6 5 9 9 C 1.38343 * 120.26830 * 359.72449 * 8 7 6 10 10 C 1.37983 * 120.13239 * 359.96857 * 9 8 7 11 11 N 1.32749 * 121.91381 * 359.66377 * 4 3 2 12 12 C 1.31910 * 120.89975 * 0.02562 * 11 4 3 13 13 C 1.40153 * 120.49228 * 179.69297 * 2 1 3 14 14 C 1.47563 * 120.86718 * 359.97438 * 13 2 1 15 15 O 1.21615 * 120.00374 * 303.70633 * 14 13 2 16 16 N 1.34774 * 119.99954 * 123.70427 * 14 13 2 17 17 C 1.36857 * 120.00203 * 184.95148 * 16 14 13 18 18 H 1.08001 * 119.99906 * 14.45141 * 17 16 14 19 19 C 1.39061 * 119.99806 * 194.46046 * 17 16 14 20 20 N 1.31357 * 120.00333 * 12.15250 * 19 17 16 21 21 Si 1.86801 * 119.99478 * 192.15478 * 19 17 16 22 22 H 1.48503 * 109.47158 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47106 * 119.99889 * 21 19 17 24 24 H 1.48498 * 109.47294 * 239.99594 * 21 19 17 25 25 C 1.46503 * 120.00345 * 4.94833 * 16 14 13 26 26 C 1.47198 * 109.47185 * 89.33121 * 25 16 14 27 27 N 5.52835 * 130.22369 * 194.70044 * 2 1 3 28 28 H 1.09000 * 109.47280 * 274.72965 * 1 2 3 29 29 H 1.08997 * 109.47299 * 34.73195 * 1 2 3 30 30 H 1.09005 * 109.47469 * 154.73050 * 1 2 3 31 31 H 1.07998 * 120.06552 * 359.97438 * 6 5 4 32 32 H 1.08002 * 119.93473 * 180.31554 * 7 6 5 33 33 H 1.08004 * 119.86918 * 179.73880 * 8 7 6 34 34 H 1.08004 * 119.93367 * 179.97438 * 9 8 7 35 35 H 1.07998 * 120.06695 * 180.02562 * 10 9 8 36 36 H 1.08007 * 120.49326 * 179.97438 * 12 11 4 37 37 H 0.97003 * 119.99482 * 180.02562 * 20 19 17 38 38 H 1.08995 * 109.47462 * 209.33997 * 25 16 14 39 39 H 1.09003 * 109.46492 * 329.34003 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1766 1.1369 0.0000 4 6 3.5037 1.1462 -0.0061 5 6 4.2139 2.4466 -0.0132 6 6 3.4908 3.6391 -0.0194 7 6 4.1578 4.8470 -0.0196 8 6 5.5409 4.8766 -0.0256 9 6 6.2637 3.6969 -0.0258 10 6 5.6080 2.4829 -0.0193 11 7 4.2134 0.0243 -0.0059 12 6 3.6189 -1.1533 0.0001 13 6 2.2181 -1.2077 0.0065 14 6 1.5108 -2.5027 0.0140 15 8 0.7068 -2.7514 0.8918 16 7 1.7559 -3.4100 -0.9521 17 6 1.0282 -4.5679 -1.0040 18 1 0.1162 -4.6585 -0.4326 19 6 1.4631 -5.6277 -1.7923 20 7 2.6768 -5.6178 -2.2947 21 14 0.3212 -7.0653 -2.1368 22 1 -0.9808 -6.8366 -1.4602 23 1 0.1044 -7.1854 -3.6010 24 1 0.9325 -8.3172 -1.6227 25 6 2.8013 -3.1568 -1.9467 26 6 4.0856 -3.6795 -1.4527 27 7 5.0770 -4.0829 -1.0712 28 1 -0.3634 0.0847 1.0241 29 1 -0.3634 0.8445 -0.5855 30 1 -0.3634 -0.9293 -0.4387 31 1 2.4110 3.6171 -0.0195 32 1 3.5990 5.7712 -0.0192 33 1 6.0587 5.8244 -0.0300 34 1 7.3433 3.7264 -0.0309 35 1 6.1733 1.5626 -0.0190 36 1 4.2028 -2.0619 -0.0002 37 1 2.9799 -6.3569 -2.8449 38 1 2.5418 -3.6541 -2.8812 39 1 2.8876 -2.0837 -2.1179 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158289844.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:42:30 Heat of formation + Delta-G solvation = 87.524009 kcal Electronic energy + Delta-G solvation = -25978.790563 eV Core-core repulsion = 22273.552782 eV Total energy + Delta-G solvation = -3705.237780 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.117 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.11355 -39.19408 -38.48103 -36.08270 -34.56171 -34.23025 -33.22699 -31.93601 -31.03387 -30.30091 -28.51587 -27.60849 -25.71146 -24.32989 -23.36822 -22.12523 -21.51772 -19.96213 -18.18038 -17.77349 -17.39975 -16.76493 -16.41014 -15.97023 -15.23582 -14.98295 -14.74716 -14.61065 -14.24669 -13.79571 -13.69747 -13.47488 -13.18666 -13.10839 -12.96214 -12.73503 -12.51419 -12.18756 -12.00408 -11.70895 -11.60499 -11.43924 -11.30307 -11.16008 -11.13802 -10.72356 -10.60826 -10.47951 -10.35432 -9.73130 -9.48692 -9.10806 -9.03063 -8.89989 -8.40626 -8.31535 -6.67484 -4.20189 0.35606 1.22672 1.33383 1.56839 2.96399 3.11997 3.17730 3.31340 3.53660 3.60558 3.73382 3.86654 3.96640 4.10011 4.17866 4.51330 4.64194 4.74972 4.84718 4.90081 4.98926 5.02096 5.16441 5.32526 5.38501 5.41862 5.48643 5.70982 5.79651 5.80641 5.90637 5.93886 6.02536 6.17411 6.31350 6.38395 6.48886 6.51432 6.56063 6.83022 7.10015 7.26670 7.63828 8.06295 8.16387 8.59658 8.76470 8.95112 9.46996 10.35147 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.022668 B = 0.003377 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.931407 B = 8288.854614 C = 9184.389838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.215 3.785 3 N -0.514 5.514 4 C 0.354 3.646 5 C -0.041 4.041 6 C -0.072 4.072 7 C -0.133 4.133 8 C -0.105 4.105 9 C -0.132 4.132 10 C -0.071 4.071 11 N -0.513 5.513 12 C 0.171 3.829 13 C -0.205 4.205 14 C 0.493 3.507 15 O -0.560 6.560 16 N -0.426 5.426 17 C -0.305 4.305 18 H 0.115 0.885 19 C 0.031 3.969 20 N -0.881 5.881 21 Si 0.939 3.061 22 H -0.265 1.265 23 H -0.277 1.277 24 H -0.280 1.280 25 C 0.216 3.784 26 C 0.249 3.751 27 N -0.468 5.468 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.137 0.863 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.126 0.874 35 H 0.138 0.862 36 H 0.169 0.831 37 H 0.277 0.723 38 H 0.142 0.858 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.220 16.397 -1.325 16.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.067 3.933 3 N -0.228 5.228 4 C 0.090 3.910 5 C -0.043 4.043 6 C -0.091 4.091 7 C -0.151 4.151 8 C -0.123 4.123 9 C -0.150 4.150 10 C -0.091 4.091 11 N -0.227 5.227 12 C 0.003 3.997 13 C -0.213 4.213 14 C 0.280 3.720 15 O -0.443 6.443 16 N -0.145 5.145 17 C -0.432 4.432 18 H 0.133 0.867 19 C -0.172 4.172 20 N -0.521 5.521 21 Si 0.765 3.235 22 H -0.189 1.189 23 H -0.203 1.203 24 H -0.206 1.206 25 C 0.089 3.911 26 C -0.069 4.069 27 N -0.148 5.148 28 H 0.108 0.892 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.155 0.845 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.144 0.856 35 H 0.155 0.845 36 H 0.186 0.814 37 H 0.089 0.911 38 H 0.159 0.841 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.812 16.330 -0.464 16.577 hybrid contribution -0.958 -1.693 -0.400 1.986 sum 1.854 14.637 -0.864 14.779 Atomic orbital electron populations 1.20791 0.86921 1.04105 1.04070 1.21790 0.97655 0.86273 0.87550 1.68126 1.08725 1.30014 1.15931 1.21304 0.86226 0.91944 0.91567 1.18105 0.92720 0.89098 1.04342 1.21352 1.00921 0.90901 0.95950 1.21099 0.94477 0.97720 1.01829 1.21313 0.94333 0.98265 0.98428 1.21112 1.00107 0.92138 1.01675 1.21392 0.93156 0.98854 0.95703 1.68287 1.40851 0.98227 1.15291 1.23638 0.91305 0.95967 0.88740 1.21972 0.96064 0.97398 1.05884 1.17382 0.86936 0.84008 0.83667 1.90681 1.38287 1.79067 1.36251 1.43581 1.30058 1.17534 1.23310 1.19926 1.05659 0.89885 1.27687 0.86704 1.25401 0.96219 0.99011 0.96619 1.69693 1.15352 1.33259 1.33748 0.85644 0.79851 0.79726 0.78301 1.18910 1.20260 1.20616 1.18948 0.79361 0.97355 0.95425 1.29107 0.93696 0.91252 0.92844 1.80972 1.13916 1.10905 1.09017 0.89235 0.90247 0.89245 0.84500 0.85655 0.85985 0.85626 0.84453 0.81366 0.91136 0.84080 0.90833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.48 9.58 36.00 0.34 -1.14 16 2 C 0.21 3.70 6.87 -81.83 -0.56 3.13 16 3 N -0.51 -8.49 9.36 -7.08 -0.07 -8.56 16 4 C 0.35 5.87 7.55 -156.77 -1.18 4.69 16 5 C -0.04 -0.57 5.88 -104.91 -0.62 -1.19 16 6 C -0.07 -0.85 9.56 -39.22 -0.38 -1.23 16 7 C -0.13 -1.28 10.03 -39.63 -0.40 -1.68 16 8 C -0.10 -0.94 10.04 -39.50 -0.40 -1.34 16 9 C -0.13 -1.32 10.03 -39.64 -0.40 -1.72 16 10 C -0.07 -0.89 9.56 -39.22 -0.38 -1.27 16 11 N -0.51 -9.08 9.42 -10.81 -0.10 -9.18 16 12 C 0.17 3.20 9.10 -16.79 -0.15 3.04 16 13 C -0.21 -3.94 4.65 -104.64 -0.49 -4.43 16 14 C 0.49 10.92 6.04 -12.46 -0.08 10.84 16 15 O -0.56 -13.94 15.90 5.26 0.08 -13.85 16 16 N -0.43 -9.59 2.58 -119.11 -0.31 -9.90 16 17 C -0.30 -7.38 9.42 -15.00 -0.14 -7.52 16 18 H 0.12 2.90 7.32 -52.49 -0.38 2.51 16 19 C 0.03 0.72 5.15 -17.45 -0.09 0.63 16 20 N -0.88 -20.85 8.64 55.50 0.48 -20.37 16 21 Si 0.94 18.71 29.57 -169.99 -5.03 13.69 16 22 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 23 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 24 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 25 C 0.22 4.31 4.75 -6.83 -0.03 4.28 16 26 C 0.25 5.41 10.68 -20.75 -0.22 5.19 16 27 N -0.47 -10.83 18.35 42.17 0.77 -10.06 16 28 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 29 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.09 1.42 6.78 -51.93 -0.35 1.06 16 31 H 0.14 1.59 7.50 -52.49 -0.39 1.19 16 32 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 33 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 34 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 35 H 0.14 1.76 7.50 -52.49 -0.39 1.36 16 36 H 0.17 3.32 5.14 -52.48 -0.27 3.05 16 37 H 0.28 6.37 8.31 -40.82 -0.34 6.03 16 38 H 0.14 2.85 6.26 -51.93 -0.33 2.52 16 39 H 0.07 1.26 6.18 -51.93 -0.32 0.94 16 LS Contribution 339.47 15.07 5.12 5.12 Total: -1.00 -28.76 339.47 -7.90 -36.65 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -3.69 Total: 6.17 kcal Atomic # 6 Polarization: 15.46 SS G_CDS: -5.16 Total: 10.30 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: 0.78 Total: -58.06 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: 0.08 Total: -13.85 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.76 -7.90 -36.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158289844.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.178 kcal (2) G-P(sol) polarization free energy of solvation -28.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds