Wall clock time and date at job start Sat Apr 11 2020 00:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47610 * 2 1 4 4 N 1.46494 * 109.47395 * 179.97438 * 3 2 1 5 5 C 1.36933 * 120.00224 * 84.70861 * 4 3 2 6 6 H 1.08002 * 119.99578 * 321.47984 * 5 4 3 7 7 C 1.38808 * 120.00551 * 141.47928 * 5 4 3 8 8 N 1.31623 * 119.99532 * 338.80499 * 7 5 4 9 9 Si 1.86804 * 120.00340 * 158.80092 * 7 5 4 10 10 H 1.48496 * 109.46695 * 90.00248 * 9 7 5 11 11 H 1.48502 * 109.47023 * 210.00274 * 9 7 5 12 12 H 1.48494 * 109.46872 * 330.00252 * 9 7 5 13 13 C 1.46506 * 120.00163 * 264.70552 * 4 3 2 14 14 C 1.53000 * 109.46991 * 90.00042 * 13 4 3 15 15 H 1.09005 * 110.85921 * 308.79829 * 14 13 4 16 16 C 1.54737 * 110.97400 * 185.00340 * 14 13 4 17 17 C 1.51685 * 102.55098 * 217.66100 * 16 14 13 18 18 C 1.47622 * 125.86604 * 195.37322 * 17 16 14 19 19 C 1.39627 * 120.13621 * 359.71857 * 18 17 16 20 20 C 1.37916 * 119.86425 * 179.79401 * 19 18 17 21 21 C 1.38497 * 120.13370 * 0.46552 * 20 19 18 22 22 Cl 1.73591 * 119.86200 * 179.76710 * 21 20 19 23 23 C 1.38494 * 120.27138 * 359.78981 * 21 20 19 24 24 C 1.37912 * 120.13997 * 359.97374 * 23 21 20 25 25 N 1.29097 * 108.26893 * 15.39024 * 17 16 14 26 26 O 1.41392 * 112.86866 * 0.31959 * 25 17 16 27 27 H 1.08998 * 109.46772 * 299.99814 * 1 2 3 28 28 H 1.09001 * 109.46941 * 59.99945 * 1 2 3 29 29 H 1.08997 * 109.47115 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47506 * 239.99616 * 2 1 3 31 31 H 1.09001 * 109.46941 * 120.00055 * 2 1 3 32 32 H 1.08991 * 109.47025 * 300.00234 * 3 2 1 33 33 H 1.09006 * 109.46721 * 59.99615 * 3 2 1 34 34 H 0.97006 * 119.99715 * 179.97438 * 8 7 5 35 35 H 1.08999 * 109.47421 * 210.00155 * 13 4 3 36 36 H 1.09004 * 109.46845 * 330.00614 * 13 4 3 37 37 H 1.09003 * 110.79224 * 335.92393 * 16 14 13 38 38 H 1.08996 * 110.79500 * 99.39148 * 16 14 13 39 39 H 1.07997 * 120.07029 * 0.02562 * 19 18 17 40 40 H 1.07991 * 119.93641 * 180.25048 * 20 19 18 41 41 H 1.08000 * 119.92678 * 180.02562 * 23 21 20 42 42 H 1.08000 * 120.07195 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1903 1.3328 -1.1799 6 1 3.8268 0.6758 -1.9562 7 6 5.3519 2.0661 -1.3789 8 7 5.5799 3.1454 -0.6608 9 14 6.5917 1.5212 -2.6656 10 1 6.2642 2.1550 -3.9679 11 1 7.9552 1.9316 -2.2442 12 1 6.5410 0.0439 -2.8073 13 6 4.2371 1.5596 1.2643 14 6 4.4918 0.1641 1.8374 15 1 3.5681 -0.4132 1.8784 16 6 5.1530 0.2510 3.2337 17 6 6.1286 -0.9102 3.2093 18 6 6.8005 -1.5001 4.3840 19 6 6.5630 -0.9847 5.6597 20 6 7.1904 -1.5429 6.7537 21 6 8.0620 -2.6064 6.5877 22 17 8.8526 -3.2997 7.9689 23 6 8.3057 -3.1186 5.3242 24 6 7.6806 -2.5722 4.2230 25 7 6.2707 -1.2937 1.9849 26 8 5.5016 -0.5298 1.0770 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6768 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 6.3919 3.6577 -0.7996 35 1 5.1896 2.0592 1.0874 36 1 3.6477 2.1414 1.9730 37 1 5.6806 1.1972 3.3538 38 1 4.4119 0.1173 4.0218 39 1 5.8865 -0.1530 5.7900 40 1 7.0045 -1.1478 7.7413 41 1 8.9861 -3.9483 5.2013 42 1 7.8712 -2.9728 3.2383 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179612453.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:42:34 Heat of formation + Delta-G solvation = 50.368217 kcal Electronic energy + Delta-G solvation = -24491.613998 eV Core-core repulsion = 20885.872515 eV Total energy + Delta-G solvation = -3605.741483 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.119 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.03727 -38.96172 -36.77757 -36.12699 -33.29893 -32.87824 -31.64119 -31.20975 -30.01967 -29.81596 -26.03766 -25.50695 -23.63471 -23.14249 -22.29263 -20.62127 -20.23996 -19.72814 -17.44314 -17.00672 -16.21482 -15.82495 -15.12287 -15.06664 -14.73823 -14.33253 -14.13322 -13.86574 -13.81155 -13.75687 -13.32929 -12.99741 -12.70264 -12.56861 -12.23398 -11.93760 -11.84672 -11.80565 -11.53897 -11.25607 -11.14639 -11.13977 -10.88489 -10.66028 -10.61705 -10.43866 -10.27687 -10.01517 -9.88687 -9.64034 -9.38255 -9.36961 -8.41188 -8.38092 -6.56248 -5.76874 -3.34698 0.46116 1.00723 1.80768 2.26999 3.42604 3.46564 3.49120 3.51186 3.59200 4.18158 4.50331 4.54225 4.57101 4.83996 4.97234 5.03464 5.16263 5.28942 5.32853 5.43647 5.50646 5.57579 5.64862 5.66118 5.74988 5.85664 5.90495 6.01448 6.10687 6.20376 6.22493 6.23891 6.30454 6.43350 6.45763 6.56434 6.60163 6.67959 6.95211 7.14579 7.49119 7.85858 7.89082 8.55090 9.19768 9.83050 10.38904 11.24766 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.015198 B = 0.003014 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.876346 B = 9286.225238 C =10388.322158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.144 4.144 3 C 0.146 3.854 4 N -0.578 5.578 5 C -0.251 4.251 6 H 0.058 0.942 7 C 0.021 3.979 8 N -0.892 5.892 9 Si 0.896 3.104 10 H -0.288 1.288 11 H -0.290 1.290 12 H -0.275 1.275 13 C 0.151 3.849 14 C 0.027 3.973 15 H 0.072 0.928 16 C -0.143 4.143 17 C 0.089 3.911 18 C -0.017 4.017 19 C -0.080 4.080 20 C -0.112 4.112 21 C -0.027 4.027 22 Cl -0.072 7.072 23 C -0.112 4.112 24 C -0.074 4.074 25 N -0.289 5.289 26 O -0.147 6.147 27 H 0.046 0.954 28 H 0.050 0.950 29 H 0.042 0.958 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.033 0.967 34 H 0.254 0.746 35 H 0.104 0.896 36 H 0.044 0.956 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.726 -8.820 16.746 18.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.184 4.184 3 C 0.020 3.980 4 N -0.297 5.297 5 C -0.381 4.381 6 H 0.076 0.924 7 C -0.179 4.179 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.215 1.215 11 H -0.216 1.216 12 H -0.200 1.200 13 C 0.023 3.977 14 C -0.034 4.034 15 H 0.090 0.910 16 C -0.183 4.183 17 C -0.100 4.100 18 C -0.018 4.018 19 C -0.100 4.100 20 C -0.130 4.130 21 C -0.055 4.055 22 Cl -0.043 7.043 23 C -0.130 4.130 24 C -0.094 4.094 25 N -0.025 5.025 26 O -0.170 6.170 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.121 0.879 36 H 0.063 0.937 37 H 0.119 0.881 38 H 0.109 0.891 39 H 0.158 0.842 40 H 0.156 0.844 41 H 0.155 0.845 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.418 -9.395 15.874 18.500 hybrid contribution 0.294 0.165 0.060 0.342 sum 1.712 -9.230 15.934 18.493 Atomic orbital electron populations 1.21729 0.97340 1.00357 1.01057 1.22183 0.93717 1.01061 1.01396 1.20949 0.85312 0.92847 0.98930 1.43668 0.99269 1.84454 1.02294 1.18863 1.06220 1.19092 0.93910 0.92422 1.25100 1.00526 0.94321 0.97978 1.69977 1.26216 1.14353 1.42873 0.86412 0.80998 0.79095 0.80984 1.21503 1.21587 1.19987 1.21084 1.00794 0.89086 0.86743 1.24983 0.91191 0.99615 0.87613 0.91040 1.23082 0.97173 0.97791 1.00240 1.24051 0.97735 0.95553 0.92668 1.17994 0.97184 0.96133 0.90480 1.21224 0.98930 0.99388 0.90485 1.20955 0.96669 0.95539 0.99875 1.21094 0.98417 0.97426 0.88560 1.98374 1.79325 1.83945 1.42657 1.21005 1.00821 1.00880 0.90321 1.21367 0.94196 0.94484 0.99391 1.78184 1.10895 1.12689 1.00747 1.91473 1.42690 1.59483 1.23381 0.93478 0.93122 0.93868 0.92267 0.93374 0.93506 0.94848 0.93664 0.87863 0.93744 0.88105 0.89068 0.84193 0.84374 0.84452 0.83989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 37.16 0.37 -1.74 16 2 C -0.14 -2.58 6.23 -26.73 -0.17 -2.74 16 3 C 0.15 2.99 5.72 -4.05 -0.02 2.96 16 4 N -0.58 -14.01 2.43 -173.24 -0.42 -14.43 16 5 C -0.25 -6.88 9.38 -15.06 -0.14 -7.02 16 6 H 0.06 1.61 7.91 -52.49 -0.42 1.20 16 7 C 0.02 0.58 4.95 -17.43 -0.09 0.49 16 8 N -0.89 -25.52 11.53 55.49 0.64 -24.88 16 9 Si 0.90 22.55 29.60 -169.99 -5.03 17.51 16 10 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 11 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 12 H -0.27 -7.00 7.11 56.52 0.40 -6.60 16 13 C 0.15 3.36 5.02 -4.04 -0.02 3.34 16 14 C 0.03 0.53 4.05 -25.82 -0.10 0.43 16 15 H 0.07 1.37 6.44 -51.93 -0.33 1.03 16 16 C -0.14 -2.15 5.82 -26.48 -0.15 -2.31 16 17 C 0.09 1.41 7.16 -79.43 -0.57 0.84 16 18 C -0.02 -0.21 5.87 -105.03 -0.62 -0.83 16 19 C -0.08 -0.79 9.61 -39.18 -0.38 -1.17 16 20 C -0.11 -1.00 9.81 -39.60 -0.39 -1.38 16 21 C -0.03 -0.26 6.33 -39.39 -0.25 -0.51 16 22 Cl -0.07 -0.63 28.95 -51.86 -1.50 -2.13 16 23 C -0.11 -1.10 9.81 -39.61 -0.39 -1.49 16 24 C -0.07 -0.87 9.68 -39.18 -0.38 -1.25 16 25 N -0.29 -5.66 12.12 35.30 0.43 -5.23 16 26 O -0.15 -3.39 12.17 -11.37 -0.14 -3.53 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.05 0.86 6.44 -51.93 -0.33 0.53 16 32 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 33 H 0.03 0.63 7.83 -51.93 -0.41 0.22 16 34 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.10 2.67 5.58 -51.93 -0.29 2.38 16 36 H 0.04 0.89 7.86 -51.93 -0.41 0.48 16 37 H 0.10 1.49 7.91 -51.93 -0.41 1.08 16 38 H 0.09 1.07 7.96 -51.93 -0.41 0.65 16 39 H 0.14 1.11 7.37 -52.49 -0.39 0.72 16 40 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 41 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 42 H 0.14 1.70 7.84 -52.49 -0.41 1.29 16 LS Contribution 365.67 15.07 5.51 5.51 Total: -1.00 -30.69 365.67 -9.71 -40.40 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -5.90 Total: -0.86 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -3.29 Total: -12.37 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: 0.65 Total: -44.54 kcal Atomic # 8 Polarization: -3.39 SS G_CDS: -0.14 Total: -3.53 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.03 Total: 17.51 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.50 Total: -2.13 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.69 -9.71 -40.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179612453.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.773 kcal (2) G-P(sol) polarization free energy of solvation -30.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds