Wall clock time and date at job start Sat Apr 11 2020 00:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47610 * 2 1 4 4 N 1.46494 * 109.47395 * 179.97438 * 3 2 1 5 5 C 1.36933 * 120.00224 * 84.70861 * 4 3 2 6 6 H 1.08002 * 119.99578 * 321.47984 * 5 4 3 7 7 C 1.38808 * 120.00551 * 141.47928 * 5 4 3 8 8 N 1.31623 * 119.99532 * 338.80499 * 7 5 4 9 9 Si 1.86804 * 120.00340 * 158.80092 * 7 5 4 10 10 H 1.48496 * 109.46695 * 90.00248 * 9 7 5 11 11 H 1.48502 * 109.47023 * 210.00274 * 9 7 5 12 12 H 1.48494 * 109.46872 * 330.00252 * 9 7 5 13 13 C 1.46506 * 120.00163 * 264.70552 * 4 3 2 14 14 C 1.53000 * 109.46991 * 90.00042 * 13 4 3 15 15 H 1.09005 * 110.85921 * 308.79829 * 14 13 4 16 16 C 1.54737 * 110.97400 * 185.00340 * 14 13 4 17 17 C 1.51685 * 102.55098 * 217.66100 * 16 14 13 18 18 C 1.47622 * 125.86604 * 195.37322 * 17 16 14 19 19 C 1.39627 * 120.13621 * 359.71857 * 18 17 16 20 20 C 1.37916 * 119.86425 * 179.79401 * 19 18 17 21 21 C 1.38497 * 120.13370 * 0.46552 * 20 19 18 22 22 Cl 1.73591 * 119.86200 * 179.76710 * 21 20 19 23 23 C 1.38494 * 120.27138 * 359.78981 * 21 20 19 24 24 C 1.37912 * 120.13997 * 359.97374 * 23 21 20 25 25 N 1.29097 * 108.26893 * 15.39024 * 17 16 14 26 26 O 1.41392 * 112.86866 * 0.31959 * 25 17 16 27 27 H 1.08998 * 109.46772 * 299.99814 * 1 2 3 28 28 H 1.09001 * 109.46941 * 59.99945 * 1 2 3 29 29 H 1.08997 * 109.47115 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47506 * 239.99616 * 2 1 3 31 31 H 1.09001 * 109.46941 * 120.00055 * 2 1 3 32 32 H 1.08991 * 109.47025 * 300.00234 * 3 2 1 33 33 H 1.09006 * 109.46721 * 59.99615 * 3 2 1 34 34 H 0.97006 * 119.99715 * 179.97438 * 8 7 5 35 35 H 1.08999 * 109.47421 * 210.00155 * 13 4 3 36 36 H 1.09004 * 109.46845 * 330.00614 * 13 4 3 37 37 H 1.09003 * 110.79224 * 335.92393 * 16 14 13 38 38 H 1.08996 * 110.79500 * 99.39148 * 16 14 13 39 39 H 1.07997 * 120.07029 * 0.02562 * 19 18 17 40 40 H 1.07991 * 119.93641 * 180.25048 * 20 19 18 41 41 H 1.08000 * 119.92678 * 180.02562 * 23 21 20 42 42 H 1.08000 * 120.07195 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1903 1.3328 -1.1799 6 1 3.8268 0.6758 -1.9562 7 6 5.3519 2.0661 -1.3789 8 7 5.5799 3.1454 -0.6608 9 14 6.5917 1.5212 -2.6656 10 1 6.2642 2.1550 -3.9679 11 1 7.9552 1.9316 -2.2442 12 1 6.5410 0.0439 -2.8073 13 6 4.2371 1.5596 1.2643 14 6 4.4918 0.1641 1.8374 15 1 3.5681 -0.4132 1.8784 16 6 5.1530 0.2510 3.2337 17 6 6.1286 -0.9102 3.2093 18 6 6.8005 -1.5001 4.3840 19 6 6.5630 -0.9847 5.6597 20 6 7.1904 -1.5429 6.7537 21 6 8.0620 -2.6064 6.5877 22 17 8.8526 -3.2997 7.9689 23 6 8.3057 -3.1186 5.3242 24 6 7.6806 -2.5722 4.2230 25 7 6.2707 -1.2937 1.9849 26 8 5.5016 -0.5298 1.0770 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6768 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 6.3919 3.6577 -0.7996 35 1 5.1896 2.0592 1.0874 36 1 3.6477 2.1414 1.9730 37 1 5.6806 1.1972 3.3538 38 1 4.4119 0.1173 4.0218 39 1 5.8865 -0.1530 5.7900 40 1 7.0045 -1.1478 7.7413 41 1 8.9861 -3.9483 5.2013 42 1 7.8712 -2.9728 3.2383 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179612453.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:42:33 Heat of formation + Delta-G solvation = 34.530010 kcal Electronic energy + Delta-G solvation = -24492.300794 eV Core-core repulsion = 20885.872515 eV Total energy + Delta-G solvation = -3606.428279 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.119 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.23176 -39.98891 -37.90924 -37.47985 -34.68448 -34.40600 -33.13586 -32.28251 -31.51849 -30.90692 -27.58598 -27.30208 -24.68552 -24.27369 -23.52277 -22.11861 -21.84296 -20.88441 -18.87876 -18.38174 -17.41531 -17.00515 -16.72332 -16.31879 -16.08105 -15.81043 -15.64757 -15.20328 -14.89553 -14.64624 -14.57576 -14.39270 -14.12830 -13.91463 -13.56126 -13.30047 -13.00568 -12.92630 -12.83176 -12.68346 -12.64024 -12.50997 -12.40756 -12.11759 -12.04011 -11.91775 -11.87088 -11.81114 -11.47153 -11.25162 -10.63127 -10.48030 -10.13814 -9.48714 -8.54655 -7.84007 -5.45116 -0.47064 0.24116 1.06020 1.16702 1.37978 1.42739 1.53589 2.12662 2.49335 2.62503 2.99339 3.26545 3.49696 3.57791 3.81616 3.86550 3.88916 4.06887 4.19308 4.25386 4.32260 4.41094 4.49917 4.56579 4.64203 4.64959 4.70860 4.80064 4.84976 4.91789 4.97977 5.01495 5.13310 5.20049 5.23282 5.26397 5.35594 5.43677 5.62133 5.63411 5.65169 5.71514 6.43820 6.53727 7.18454 7.86712 8.36178 9.11518 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.015198 B = 0.003014 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.876346 B = 9286.225238 C =10388.322158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.133 4.133 3 C 0.144 3.856 4 N -0.596 5.596 5 C -0.251 4.251 6 H 0.041 0.959 7 C -0.021 4.021 8 N -0.913 5.913 9 Si 0.941 3.059 10 H -0.278 1.278 11 H -0.292 1.292 12 H -0.285 1.285 13 C 0.154 3.846 14 C 0.028 3.972 15 H 0.072 0.928 16 C -0.135 4.135 17 C 0.121 3.879 18 C -0.047 4.047 19 C -0.066 4.066 20 C -0.107 4.107 21 C -0.025 4.025 22 Cl -0.061 7.061 23 C -0.113 4.113 24 C -0.082 4.082 25 N -0.335 5.335 26 O -0.206 6.206 27 H 0.065 0.935 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.031 0.969 31 H 0.048 0.952 32 H 0.031 0.969 33 H 0.055 0.945 34 H 0.250 0.750 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.108 0.892 38 H 0.137 0.863 39 H 0.166 0.834 40 H 0.167 0.833 41 H 0.153 0.847 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.043 -9.303 20.086 22.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.172 4.172 3 C 0.019 3.981 4 N -0.316 5.316 5 C -0.382 4.382 6 H 0.059 0.941 7 C -0.218 4.218 8 N -0.557 5.557 9 Si 0.770 3.230 10 H -0.205 1.205 11 H -0.219 1.219 12 H -0.210 1.210 13 C 0.027 3.973 14 C -0.033 4.033 15 H 0.090 0.910 16 C -0.174 4.174 17 C -0.068 4.068 18 C -0.048 4.048 19 C -0.086 4.086 20 C -0.126 4.126 21 C -0.052 4.052 22 Cl -0.032 7.032 23 C -0.132 4.132 24 C -0.102 4.102 25 N -0.076 5.076 26 O -0.226 6.226 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.126 0.874 38 H 0.155 0.845 39 H 0.184 0.816 40 H 0.185 0.815 41 H 0.171 0.829 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.702 -9.872 19.199 21.599 hybrid contribution 0.551 0.222 -0.746 0.954 sum 1.253 -9.650 18.453 20.861 Atomic orbital electron populations 1.21655 0.94082 1.01781 1.02094 1.22002 0.96435 0.98749 1.00052 1.21064 0.83303 0.94544 0.99190 1.43885 1.00831 1.84815 1.02085 1.18900 1.06612 1.17917 0.94724 0.94100 1.25560 1.01802 0.94724 0.99753 1.70060 1.26355 1.15129 1.44166 0.85705 0.79384 0.78000 0.79942 1.20481 1.21853 1.21038 1.20976 0.99086 0.90761 0.86516 1.24759 0.91341 0.97469 0.89707 0.90991 1.23087 0.97810 0.97688 0.98835 1.24628 0.95642 0.94123 0.92452 1.18062 0.98832 0.97562 0.90344 1.21486 0.98528 0.99346 0.89219 1.21284 0.95608 0.94805 1.00864 1.21298 0.97970 0.97254 0.88697 1.98388 1.79096 1.83800 1.41911 1.21131 1.00807 1.01242 0.90013 1.21357 0.94597 0.94693 0.99583 1.78216 1.12911 1.14526 1.01952 1.91412 1.44072 1.60857 1.26222 0.91626 0.92901 0.92272 0.95054 0.93316 0.95025 0.92640 0.94073 0.91562 0.91621 0.87428 0.84547 0.81629 0.81509 0.82912 0.85295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 9.91 71.98 0.71 -2.96 16 2 C -0.13 -4.71 6.23 30.59 0.19 -4.52 16 3 C 0.14 5.89 5.72 86.38 0.49 6.39 16 4 N -0.60 -29.52 2.43 -702.01 -1.70 -31.23 16 5 C -0.25 -14.25 9.38 84.03 0.79 -13.47 16 6 H 0.04 2.41 7.91 -2.91 -0.02 2.39 16 7 C -0.02 -1.21 4.95 84.86 0.42 -0.79 16 8 N -0.91 -53.80 11.53 21.65 0.25 -53.55 16 9 Si 0.94 48.01 29.60 68.60 2.03 50.04 16 10 H -0.28 -13.62 7.11 99.48 0.71 -12.92 16 11 H -0.29 -14.89 7.11 99.48 0.71 -14.19 16 12 H -0.28 -14.81 7.11 99.48 0.71 -14.10 16 13 C 0.15 6.93 5.02 86.38 0.43 7.36 16 14 C 0.03 1.09 4.05 31.19 0.13 1.22 16 15 H 0.07 2.74 6.44 -2.38 -0.02 2.73 16 16 C -0.13 -3.81 5.82 30.75 0.18 -3.63 16 17 C 0.12 3.72 7.16 45.75 0.33 4.04 16 18 C -0.05 -1.09 5.87 -20.13 -0.12 -1.21 16 19 C -0.07 -1.05 9.61 22.53 0.22 -0.84 16 20 C -0.11 -1.47 9.81 22.26 0.22 -1.26 16 21 C -0.02 -0.39 6.33 22.39 0.14 -0.25 16 22 Cl -0.06 -0.88 28.95 -2.72 -0.08 -0.96 16 23 C -0.11 -2.01 9.81 22.25 0.22 -1.80 16 24 C -0.08 -1.85 9.68 22.53 0.22 -1.63 16 25 N -0.34 -13.55 12.12 -42.24 -0.51 -14.06 16 26 O -0.21 -9.94 12.17 -38.32 -0.47 -10.41 16 27 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.05 1.71 6.44 -2.39 -0.02 1.69 16 32 H 0.03 1.36 8.08 -2.39 -0.02 1.34 16 33 H 0.06 2.00 7.83 -2.38 -0.02 1.99 16 34 H 0.25 14.34 8.31 -92.70 -0.77 13.57 16 35 H 0.07 3.53 5.58 -2.39 -0.01 3.51 16 36 H 0.07 2.57 7.86 -2.38 -0.02 2.55 16 37 H 0.11 2.97 7.91 -2.39 -0.02 2.95 16 38 H 0.14 2.61 7.96 -2.39 -0.02 2.59 16 39 H 0.17 1.77 7.37 -2.91 -0.02 1.75 16 40 H 0.17 1.37 8.06 -2.92 -0.02 1.35 16 41 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 42 H 0.13 3.19 7.84 -2.91 -0.02 3.17 16 Total: -1.00 -70.62 365.67 5.11 -65.51 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: 1.02 Total: 7.98 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: 4.57 Total: -13.33 kcal Atomic # 7 Polarization: -96.87 SS G_CDS: -1.97 Total: -98.84 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: -0.47 Total: -10.41 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 2.03 Total: 50.04 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -0.08 Total: -0.96 kcal Total: -70.62 5.11 -65.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179612453.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.043 kcal (2) G-P(sol) polarization free energy of solvation -70.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds