Wall clock time and date at job start Sat Apr 11 2020 00:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46885 * 2 1 4 4 N 1.46502 * 109.47059 * 179.97438 * 3 2 1 5 5 C 1.36932 * 120.00374 * 264.10973 * 4 3 2 6 6 H 1.08002 * 120.00210 * 188.09289 * 5 4 3 7 7 C 1.38820 * 119.99966 * 8.09437 * 5 4 3 8 8 N 1.31612 * 119.99824 * 25.53925 * 7 5 4 9 9 Si 1.86801 * 119.99986 * 205.54325 * 7 5 4 10 10 H 1.48504 * 109.47180 * 84.98221 * 9 7 5 11 11 H 1.48492 * 109.47113 * 204.98339 * 9 7 5 12 12 H 1.48505 * 109.47117 * 324.98707 * 9 7 5 13 13 C 1.46499 * 119.99826 * 84.10407 * 4 3 2 14 14 C 1.53002 * 109.47329 * 270.00084 * 13 4 3 15 15 H 1.09005 * 110.88413 * 56.18395 * 14 13 4 16 16 C 1.54737 * 110.97495 * 179.97438 * 14 13 4 17 17 C 1.51685 * 102.72385 * 142.43540 * 16 14 13 18 18 C 1.47623 * 125.86469 * 164.51045 * 17 16 14 19 19 C 1.39626 * 120.13748 * 359.73526 * 18 17 16 20 20 C 1.37914 * 119.86503 * 179.74415 * 19 18 17 21 21 C 1.38489 * 120.13146 * 0.52177 * 20 19 18 22 22 Cl 1.73597 * 119.86347 * 179.74626 * 21 20 19 23 23 C 1.38490 * 120.27609 * 359.73217 * 21 20 19 24 24 C 1.37908 * 120.13547 * 0.02562 * 23 21 20 25 25 N 1.29093 * 108.26874 * 344.51640 * 17 16 14 26 26 O 1.41389 * 112.87132 * 359.67888 * 25 17 16 27 27 H 1.09000 * 109.46879 * 299.99995 * 1 2 3 28 28 H 1.08995 * 109.47103 * 59.99832 * 1 2 3 29 29 H 1.09001 * 109.46995 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46879 * 240.00005 * 2 1 3 31 31 H 1.08995 * 109.47103 * 120.00167 * 2 1 3 32 32 H 1.09003 * 109.47180 * 60.00785 * 3 2 1 33 33 H 1.08995 * 109.47387 * 299.99994 * 3 2 1 34 34 H 0.97002 * 119.99896 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.46909 * 150.00252 * 13 4 3 36 36 H 1.09003 * 109.47177 * 30.00327 * 13 4 3 37 37 H 1.09001 * 110.78982 * 24.08132 * 16 14 13 38 38 H 1.08998 * 110.79425 * 260.79985 * 16 14 13 39 39 H 1.08003 * 120.06772 * 359.96600 * 19 18 17 40 40 H 1.07995 * 119.93697 * 180.24954 * 20 19 18 41 41 H 1.08000 * 119.93383 * 179.97438 * 23 21 20 42 42 H 1.08004 * 120.06879 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1892 1.5645 1.1804 6 1 5.2612 1.6959 1.1720 7 6 3.5051 1.5190 2.3875 8 7 2.3547 0.8848 2.4683 9 14 4.2172 2.3580 3.8969 10 1 3.8310 3.7920 3.8947 11 1 3.6892 1.7051 5.1216 12 1 5.6977 2.2442 3.8743 13 6 4.2380 1.3121 -1.2611 14 6 4.4932 -0.1682 -1.5520 15 1 3.5580 -0.7280 -1.5673 16 6 5.2666 -0.3463 -2.8803 17 6 6.1995 -1.5018 -2.5714 18 6 6.9402 -2.3046 -3.5643 19 6 6.8092 -2.0293 -4.9269 20 6 7.5079 -2.7795 -5.8494 21 6 8.3298 -3.8111 -5.4273 22 17 9.2009 -4.7552 -6.5949 23 6 8.4598 -4.0926 -4.0776 24 6 7.7701 -3.3464 -3.1452 25 7 6.2344 -1.6625 -1.2910 26 8 5.4227 -0.7348 -0.5984 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6767 1.9564 -0.8899 34 1 1.8764 0.8534 3.3117 35 1 5.1904 1.8366 -1.1839 36 1 3.6492 1.7451 -2.0698 37 1 5.8321 0.5535 -3.1224 38 1 4.5867 -0.6044 -3.6923 39 1 6.1649 -1.2281 -5.2575 40 1 7.4106 -2.5649 -6.9034 41 1 9.1019 -4.8987 -3.7546 42 1 7.8726 -3.5666 -2.0928 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179612467.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:42:38 Heat of formation + Delta-G solvation = 63.325913 kcal Electronic energy + Delta-G solvation = -24432.124246 eV Core-core repulsion = 20826.944651 eV Total energy + Delta-G solvation = -3605.179595 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.119 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -40.11029 -39.02849 -36.82135 -36.19665 -33.32935 -32.17347 -31.82645 -31.47461 -30.04704 -29.76154 -25.95541 -25.47363 -23.69473 -23.17130 -22.19492 -20.61384 -20.05856 -19.71520 -17.52956 -17.02088 -16.16947 -15.95299 -15.42372 -15.15893 -14.70497 -14.25867 -13.90055 -13.87112 -13.72795 -13.58448 -13.32840 -13.01275 -12.72131 -12.39665 -12.17605 -11.97653 -11.88790 -11.82139 -11.36533 -11.28910 -11.17727 -11.13812 -10.77088 -10.64297 -10.48354 -10.31095 -10.10140 -9.88957 -9.62434 -9.48675 -9.42470 -9.17858 -8.45701 -8.28749 -6.88210 -5.70763 -3.01124 0.40090 0.95521 1.76545 2.19160 3.36290 3.43061 3.46369 3.53008 3.54004 4.08886 4.43032 4.51662 4.54480 4.74940 4.89209 4.94906 5.10337 5.19143 5.27217 5.41275 5.49665 5.58363 5.60479 5.75382 5.85537 5.91227 5.97559 6.09740 6.14270 6.19289 6.23030 6.36222 6.38559 6.52646 6.62324 6.67073 6.91252 7.14782 7.25474 7.72051 7.76086 7.82548 8.13751 8.39545 9.28804 9.89261 10.32794 11.33558 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.022013 B = 0.002579 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.647709 B =10853.920626 C =11515.812530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.129 4.129 3 C 0.169 3.831 4 N -0.589 5.589 5 C -0.240 4.240 6 H 0.075 0.925 7 C -0.001 4.001 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.290 1.290 11 H -0.294 1.294 12 H -0.282 1.282 13 C 0.156 3.844 14 C 0.020 3.980 15 H 0.084 0.916 16 C -0.145 4.145 17 C 0.089 3.911 18 C -0.018 4.018 19 C -0.080 4.080 20 C -0.112 4.112 21 C -0.027 4.027 22 Cl -0.071 7.071 23 C -0.111 4.111 24 C -0.074 4.074 25 N -0.285 5.285 26 O -0.148 6.148 27 H 0.052 0.948 28 H 0.030 0.970 29 H 0.032 0.968 30 H 0.015 0.985 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.002 0.998 34 H 0.250 0.750 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.497 -7.134 -18.550 21.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.168 4.168 3 C 0.044 3.956 4 N -0.308 5.308 5 C -0.369 4.369 6 H 0.093 0.907 7 C -0.198 4.198 8 N -0.541 5.541 9 Si 0.726 3.274 10 H -0.218 1.218 11 H -0.221 1.221 12 H -0.207 1.207 13 C 0.026 3.974 14 C -0.041 4.041 15 H 0.102 0.898 16 C -0.185 4.185 17 C -0.100 4.100 18 C -0.019 4.019 19 C -0.101 4.101 20 C -0.131 4.131 21 C -0.054 4.054 22 Cl -0.042 7.042 23 C -0.130 4.130 24 C -0.094 4.094 25 N -0.021 5.021 26 O -0.172 6.172 27 H 0.071 0.929 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.034 0.966 31 H 0.118 0.882 32 H 0.110 0.890 33 H 0.021 0.979 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.116 0.884 38 H 0.111 0.889 39 H 0.158 0.842 40 H 0.156 0.844 41 H 0.156 0.844 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 7.868 -7.698 -17.374 20.567 hybrid contribution -0.081 0.524 0.038 0.532 sum 7.787 -7.174 -17.336 20.313 Atomic orbital electron populations 1.21636 0.98575 0.99263 1.00070 1.22222 0.92822 1.00596 1.01145 1.20957 0.81691 0.94439 0.98472 1.44307 1.01792 1.83229 1.01506 1.19252 0.92168 1.42185 0.83267 0.90684 1.24684 0.97609 1.00351 0.97170 1.70150 1.17312 1.41762 1.24832 0.86375 0.78521 0.79754 0.82748 1.21769 1.22067 1.20745 1.20991 0.96879 0.89494 0.89992 1.25255 0.92900 1.01344 0.84634 0.89804 1.23111 0.97199 0.96842 1.01329 1.24060 0.97588 0.95720 0.92665 1.17982 0.97137 0.95456 0.91365 1.21211 0.98540 0.99234 0.91073 1.20955 0.96639 0.94801 1.00657 1.21103 0.98044 0.95849 0.90449 1.98378 1.75333 1.71809 1.58693 1.21016 1.00580 1.00768 0.90619 1.21374 0.94060 0.93311 1.00627 1.78231 1.09089 1.08392 1.06415 1.91558 1.44931 1.53095 1.27572 0.92885 0.95103 0.94887 0.96593 0.88173 0.89050 0.97932 0.93921 0.92621 0.92322 0.88381 0.88912 0.84240 0.84362 0.84399 0.83942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.91 37.16 0.37 -2.23 16 2 C -0.13 -2.85 5.58 -26.73 -0.15 -3.00 16 3 C 0.17 3.92 4.92 -4.04 -0.02 3.90 16 4 N -0.59 -14.14 2.54 -173.23 -0.44 -14.58 16 5 C -0.24 -6.48 9.43 -15.06 -0.14 -6.62 16 6 H 0.08 2.07 7.93 -52.49 -0.42 1.65 16 7 C 0.00 -0.03 4.89 -17.43 -0.09 -0.12 16 8 N -0.89 -24.79 8.61 55.49 0.48 -24.31 16 9 Si 0.90 21.94 29.62 -169.99 -5.04 16.90 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 11 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 C 0.16 3.02 5.42 -4.04 -0.02 3.00 16 14 C 0.02 0.38 3.97 -25.82 -0.10 0.27 16 15 H 0.08 1.64 5.88 -51.93 -0.31 1.33 16 16 C -0.14 -1.94 5.81 -26.48 -0.15 -2.09 16 17 C 0.09 1.31 7.16 -79.43 -0.57 0.74 16 18 C -0.02 -0.21 5.87 -105.03 -0.62 -0.83 16 19 C -0.08 -0.72 9.61 -39.18 -0.38 -1.10 16 20 C -0.11 -0.92 9.81 -39.61 -0.39 -1.31 16 21 C -0.03 -0.24 6.33 -39.40 -0.25 -0.49 16 22 Cl -0.07 -0.59 28.95 -51.86 -1.50 -2.09 16 23 C -0.11 -1.03 9.81 -39.61 -0.39 -1.42 16 24 C -0.07 -0.81 9.68 -39.18 -0.38 -1.19 16 25 N -0.28 -5.32 12.12 35.30 0.43 -4.89 16 26 O -0.15 -3.27 11.99 -11.37 -0.14 -3.41 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.02 0.33 5.98 -51.93 -0.31 0.02 16 31 H 0.10 2.64 6.33 -51.93 -0.33 2.31 16 32 H 0.09 2.38 5.85 -51.93 -0.30 2.07 16 33 H 0.00 0.05 7.98 -51.93 -0.41 -0.36 16 34 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 35 H 0.06 1.08 8.03 -51.93 -0.42 0.66 16 36 H 0.06 0.97 7.95 -51.93 -0.41 0.56 16 37 H 0.10 1.16 7.91 -51.93 -0.41 0.75 16 38 H 0.09 0.98 7.94 -51.93 -0.41 0.56 16 39 H 0.14 0.96 7.36 -52.48 -0.39 0.57 16 40 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 41 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 42 H 0.14 1.62 7.84 -52.48 -0.41 1.21 16 LS Contribution 359.18 15.07 5.41 5.41 Total: -1.00 -29.98 359.18 -9.85 -39.83 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -5.78 Total: -0.39 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: -3.27 Total: -12.48 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 0.47 Total: -43.78 kcal Atomic # 8 Polarization: -3.27 SS G_CDS: -0.14 Total: -3.41 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.04 Total: 16.90 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.50 Total: -2.09 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.98 -9.85 -39.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179612467.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.152 kcal (2) G-P(sol) polarization free energy of solvation -29.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds