Wall clock time and date at job start Sat Apr 11 2020 00:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 115.55998 * 2 1 4 4 C 1.52992 * 117.49787 * 214.30892 * 2 1 3 5 5 C 1.52994 * 60.00152 * 252.50886 * 4 2 1 6 6 H 1.08998 * 117.50289 * 252.48805 * 5 4 2 7 7 C 1.53002 * 117.49876 * 107.48843 * 5 4 2 8 8 H 1.08999 * 109.46938 * 300.23830 * 7 5 4 9 9 N 1.46903 * 109.47304 * 180.23913 * 7 5 4 10 10 C 1.46904 * 110.99940 * 83.75864 * 9 7 5 11 11 C 1.50702 * 109.46791 * 184.88809 * 10 9 7 12 12 O 1.21286 * 120.00409 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99809 * 179.72309 * 11 10 9 14 14 C 1.37091 * 120.00130 * 180.02562 * 13 11 10 15 15 H 1.07996 * 119.99972 * 359.97438 * 14 13 11 16 16 C 1.38953 * 120.00316 * 180.02562 * 14 13 11 17 17 N 1.31413 * 119.99453 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00361 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46960 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46886 * 119.99882 * 18 16 14 21 21 H 1.48491 * 109.47549 * 240.00016 * 18 16 14 22 22 C 1.50700 * 109.47225 * 60.24065 * 7 5 4 23 23 C 1.38236 * 119.98838 * 79.72607 * 22 7 5 24 24 C 1.38210 * 120.01290 * 179.73077 * 23 22 7 25 25 C 1.38356 * 119.98850 * 0.54067 * 24 23 22 26 26 Cl 1.73598 * 120.01593 * 179.70398 * 25 24 23 27 27 C 1.38354 * 119.96912 * 359.73268 * 25 24 23 28 28 C 1.38213 * 119.98916 * 359.97438 * 27 25 24 29 29 H 1.09005 * 109.46994 * 274.17199 * 1 2 3 30 30 H 1.09007 * 109.46834 * 34.16761 * 1 2 3 31 31 H 1.08994 * 109.47215 * 154.17005 * 1 2 3 32 32 H 1.08999 * 117.49847 * 145.02163 * 4 2 1 33 33 H 1.08999 * 117.52240 * 359.97438 * 4 2 1 34 34 H 1.00900 * 110.99747 * 207.71466 * 9 7 5 35 35 H 1.08995 * 109.46833 * 64.88798 * 10 9 7 36 36 H 1.08996 * 109.47192 * 304.88969 * 10 9 7 37 37 H 0.97003 * 119.99429 * 0.02562 * 13 11 10 38 38 H 0.97004 * 120.00073 * 180.02562 * 17 16 14 39 39 H 1.08002 * 119.99360 * 359.97438 * 23 22 7 40 40 H 1.08002 * 120.00942 * 180.27350 * 24 23 22 41 41 H 1.08002 * 120.00576 * 179.97438 * 27 25 24 42 42 H 1.08000 * 119.99470 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2364 -1.1210 -0.7649 5 6 2.2365 -1.1209 0.7650 6 1 3.1716 -0.8755 1.2683 7 6 1.3588 -2.1561 1.4715 8 1 0.3187 -2.0100 1.1803 9 7 1.4871 -1.9959 2.9261 10 6 0.5868 -0.9461 3.4216 11 6 0.8315 -0.7276 4.8925 12 8 1.6732 -1.3816 5.4710 13 7 0.1191 0.1989 5.5637 14 6 0.3419 0.3981 6.9017 15 1 1.0881 -0.1877 7.4179 16 6 -0.3929 1.3529 7.5939 17 7 -1.3019 2.0646 6.9660 18 14 -0.0897 1.6238 9.4171 19 1 0.9772 0.7023 9.8837 20 1 0.3354 3.0283 9.6448 21 1 -1.3402 1.3566 10.1720 22 6 1.8009 -3.5420 1.0779 23 6 2.9071 -4.1116 1.6803 24 6 3.3096 -5.3847 1.3238 25 6 2.6119 -6.0849 0.3557 26 17 3.1215 -7.6811 -0.0982 27 6 1.5082 -5.5121 -0.2509 28 6 1.1030 -4.2412 0.1108 29 1 -0.3633 0.0748 1.0250 30 1 -0.3633 0.8504 -0.5772 31 1 -0.3633 -0.9249 -0.4477 32 1 3.1715 -0.8752 -1.2682 33 1 1.6115 -1.8589 -1.2680 34 1 1.3203 -2.8697 3.4022 35 1 -0.4478 -1.2520 3.2668 36 1 0.7766 -0.0194 2.8801 37 1 -0.5514 0.7248 5.1001 38 1 -1.8146 2.7314 7.4491 39 1 3.4545 -3.5631 2.4326 40 1 4.1712 -5.8314 1.7976 41 1 0.9634 -6.0580 -1.0070 42 1 0.2412 -3.7941 -0.3623 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180021279.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:42:42 Heat of formation + Delta-G solvation = 2.026723 kcal Electronic energy + Delta-G solvation = -24287.957260 eV Core-core repulsion = 20680.119532 eV Total energy + Delta-G solvation = -3607.837727 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.119 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.11686 -38.41389 -37.86637 -36.59552 -34.87830 -33.80122 -31.45346 -31.23596 -31.03559 -28.64000 -27.29601 -25.21224 -23.70670 -22.91921 -22.33190 -21.02481 -19.29431 -19.10282 -17.91062 -17.31345 -16.45790 -16.09423 -15.55070 -15.37473 -14.90341 -14.61995 -14.18003 -14.12047 -13.77058 -13.65725 -13.53343 -13.36950 -13.15738 -12.79974 -12.45316 -12.30655 -11.85871 -11.71647 -11.62134 -11.54303 -11.43965 -11.28292 -11.15417 -11.02808 -10.93555 -10.34157 -10.22488 -10.06055 -9.77629 -9.51167 -9.18340 -8.73376 -8.47678 -8.07604 -7.95281 -6.41276 -3.81826 0.95693 1.14853 1.94930 3.16628 3.27189 3.34390 3.44226 3.70894 3.91947 4.01159 4.24823 4.56932 4.64006 4.73240 4.78457 4.87204 4.99902 5.16061 5.18213 5.23727 5.27027 5.31702 5.38204 5.52303 5.60019 5.68857 5.70345 5.78722 5.80725 5.87633 5.93643 6.00970 6.05178 6.10528 6.20182 6.27842 6.27977 6.43090 6.65574 7.19306 7.55994 7.61051 8.07290 8.62182 9.18904 9.55340 10.06907 10.76617 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.015573 B = 0.002770 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.535771 B =10107.215551 C =11441.844866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.154 4.154 3 H 0.103 0.897 4 C -0.175 4.175 5 C -0.128 4.128 6 H 0.114 0.886 7 C 0.153 3.847 8 H 0.058 0.942 9 N -0.658 5.658 10 C 0.052 3.948 11 C 0.443 3.557 12 O -0.581 6.581 13 N -0.565 5.565 14 C -0.297 4.297 15 H 0.103 0.897 16 C 0.021 3.979 17 N -0.902 5.902 18 Si 0.929 3.071 19 H -0.268 1.268 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.073 4.073 23 C -0.081 4.081 24 C -0.111 4.111 25 C -0.037 4.037 26 Cl -0.079 7.079 27 C -0.113 4.113 28 C -0.103 4.103 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.351 0.649 35 H 0.042 0.958 36 H 0.089 0.911 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.145 0.855 40 H 0.133 0.867 41 H 0.130 0.870 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.404 -10.418 -18.611 21.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.172 4.172 3 H 0.122 0.878 4 C -0.212 4.212 5 C -0.147 4.147 6 H 0.132 0.868 7 C 0.044 3.956 8 H 0.076 0.924 9 N -0.290 5.290 10 C -0.081 4.081 11 C 0.228 3.772 12 O -0.465 6.465 13 N -0.202 5.202 14 C -0.427 4.427 15 H 0.121 0.879 16 C -0.180 4.180 17 N -0.544 5.544 18 Si 0.756 3.244 19 H -0.192 1.192 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.074 4.074 23 C -0.100 4.100 24 C -0.130 4.130 25 C -0.064 4.064 26 Cl -0.050 7.050 27 C -0.132 4.132 28 C -0.121 4.121 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.171 0.829 35 H 0.060 0.940 36 H 0.107 0.893 37 H 0.225 0.775 38 H 0.080 0.920 39 H 0.163 0.837 40 H 0.150 0.850 41 H 0.148 0.852 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.426 -10.439 -18.200 21.443 hybrid contribution -1.130 0.004 0.465 1.221 sum 3.296 -10.435 -17.735 20.840 Atomic orbital electron populations 1.21421 0.93115 1.01569 1.02249 1.22406 0.95283 0.94679 1.04800 0.87846 1.23080 1.02445 1.01434 0.94252 1.22348 1.01349 0.98399 0.92580 0.86798 1.20008 0.97169 0.89456 0.89002 0.92416 1.60043 1.56207 1.11300 1.01467 1.21728 0.93982 0.96540 0.95848 1.19791 0.85333 0.84242 0.87822 1.90521 1.36143 1.50285 1.69566 1.41868 1.34945 1.33557 1.09830 1.19742 1.19913 1.18772 0.84260 0.87897 1.25255 0.96000 0.96246 1.00497 1.69621 1.23628 1.23999 1.37141 0.85812 0.78285 0.78202 0.82127 1.19214 1.20764 1.20795 1.19997 0.95615 0.95442 0.96300 1.21180 0.95814 0.93942 0.99031 1.21120 1.00239 0.94862 0.96754 1.20948 0.98080 0.87438 0.99910 1.98363 1.90684 1.24060 1.91940 1.20948 0.96017 0.95689 1.00565 1.20968 0.99897 0.93828 0.97436 0.91750 0.92128 0.92785 0.89044 0.89068 0.82868 0.93970 0.89269 0.77519 0.91961 0.83681 0.84955 0.85194 0.85455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.23 8.69 37.16 0.32 -0.90 16 2 C -0.15 -1.60 6.41 -90.62 -0.58 -2.18 16 3 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 4 C -0.17 -1.68 9.52 -26.74 -0.25 -1.94 16 5 C -0.13 -1.47 5.09 -90.62 -0.46 -1.94 16 6 H 0.11 1.49 8.14 -51.93 -0.42 1.07 16 7 C 0.15 1.83 2.28 -68.86 -0.16 1.67 16 8 H 0.06 0.66 5.56 -51.93 -0.29 0.37 16 9 N -0.66 -10.06 5.23 -109.22 -0.57 -10.63 16 10 C 0.05 0.88 5.60 -4.97 -0.03 0.85 16 11 C 0.44 10.27 7.83 -10.98 -0.09 10.19 16 12 O -0.58 -15.55 15.88 5.55 0.09 -15.46 16 13 N -0.57 -14.18 5.29 -10.97 -0.06 -14.24 16 14 C -0.30 -8.25 9.68 -14.94 -0.14 -8.40 16 15 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 16 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 17 N -0.90 -24.45 13.05 55.50 0.72 -23.72 16 18 Si 0.93 21.01 29.55 -169.99 -5.02 15.99 16 19 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 22 C -0.07 -0.81 4.37 -104.62 -0.46 -1.27 16 23 C -0.08 -0.93 9.04 -39.59 -0.36 -1.29 16 24 C -0.11 -1.18 9.83 -39.55 -0.39 -1.57 16 25 C -0.04 -0.39 6.32 -39.50 -0.25 -0.64 16 26 Cl -0.08 -0.77 28.96 -51.86 -1.50 -2.27 16 27 C -0.11 -1.08 9.83 -39.55 -0.39 -1.47 16 28 C -0.10 -0.99 9.23 -39.59 -0.37 -1.36 16 29 H 0.06 0.69 6.88 -51.93 -0.36 0.33 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.47 7.41 -51.93 -0.39 0.09 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.09 0.82 7.60 -51.93 -0.39 0.43 16 34 H 0.35 5.62 7.93 -39.29 -0.31 5.31 16 35 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.09 1.43 7.16 -51.93 -0.37 1.06 16 37 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 38 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 39 H 0.15 1.78 7.73 -52.49 -0.41 1.38 16 40 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 41 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 42 H 0.13 1.01 8.04 -52.49 -0.42 0.59 16 LS Contribution 366.97 15.07 5.53 5.53 Total: -1.00 -30.06 366.97 -10.23 -40.29 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -5.73 Total: 14.29 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -3.69 Total: -9.77 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: 0.10 Total: -48.59 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: 0.09 Total: -15.46 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.50 Total: -2.27 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.06 -10.23 -40.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180021279.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.316 kcal (2) G-P(sol) polarization free energy of solvation -30.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds