Wall clock time and date at job start Sat Apr 11 2020 00:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 115.55998 * 2 1 4 4 C 1.52992 * 117.49787 * 214.30892 * 2 1 3 5 5 C 1.52994 * 60.00152 * 252.50886 * 4 2 1 6 6 H 1.08998 * 117.50289 * 252.48805 * 5 4 2 7 7 C 1.53002 * 117.49876 * 107.48843 * 5 4 2 8 8 H 1.08999 * 109.46938 * 300.23830 * 7 5 4 9 9 N 1.46903 * 109.47304 * 180.23913 * 7 5 4 10 10 C 1.46904 * 110.99940 * 83.75864 * 9 7 5 11 11 C 1.50702 * 109.46791 * 184.88809 * 10 9 7 12 12 O 1.21286 * 120.00409 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99809 * 179.72309 * 11 10 9 14 14 C 1.37091 * 120.00130 * 180.02562 * 13 11 10 15 15 H 1.07996 * 119.99972 * 359.97438 * 14 13 11 16 16 C 1.38953 * 120.00316 * 180.02562 * 14 13 11 17 17 N 1.31413 * 119.99453 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00361 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46960 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46886 * 119.99882 * 18 16 14 21 21 H 1.48491 * 109.47549 * 240.00016 * 18 16 14 22 22 C 1.50700 * 109.47225 * 60.24065 * 7 5 4 23 23 C 1.38236 * 119.98838 * 79.72607 * 22 7 5 24 24 C 1.38210 * 120.01290 * 179.73077 * 23 22 7 25 25 C 1.38356 * 119.98850 * 0.54067 * 24 23 22 26 26 Cl 1.73598 * 120.01593 * 179.70398 * 25 24 23 27 27 C 1.38354 * 119.96912 * 359.73268 * 25 24 23 28 28 C 1.38213 * 119.98916 * 359.97438 * 27 25 24 29 29 H 1.09005 * 109.46994 * 274.17199 * 1 2 3 30 30 H 1.09007 * 109.46834 * 34.16761 * 1 2 3 31 31 H 1.08994 * 109.47215 * 154.17005 * 1 2 3 32 32 H 1.08999 * 117.49847 * 145.02163 * 4 2 1 33 33 H 1.08999 * 117.52240 * 359.97438 * 4 2 1 34 34 H 1.00900 * 110.99747 * 207.71466 * 9 7 5 35 35 H 1.08995 * 109.46833 * 64.88798 * 10 9 7 36 36 H 1.08996 * 109.47192 * 304.88969 * 10 9 7 37 37 H 0.97003 * 119.99429 * 0.02562 * 13 11 10 38 38 H 0.97004 * 120.00073 * 180.02562 * 17 16 14 39 39 H 1.08002 * 119.99360 * 359.97438 * 23 22 7 40 40 H 1.08002 * 120.00942 * 180.27350 * 24 23 22 41 41 H 1.08002 * 120.00576 * 179.97438 * 27 25 24 42 42 H 1.08000 * 119.99470 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2364 -1.1210 -0.7649 5 6 2.2365 -1.1209 0.7650 6 1 3.1716 -0.8755 1.2683 7 6 1.3588 -2.1561 1.4715 8 1 0.3187 -2.0100 1.1803 9 7 1.4871 -1.9959 2.9261 10 6 0.5868 -0.9461 3.4216 11 6 0.8315 -0.7276 4.8925 12 8 1.6732 -1.3816 5.4710 13 7 0.1191 0.1989 5.5637 14 6 0.3419 0.3981 6.9017 15 1 1.0881 -0.1877 7.4179 16 6 -0.3929 1.3529 7.5939 17 7 -1.3019 2.0646 6.9660 18 14 -0.0897 1.6238 9.4171 19 1 0.9772 0.7023 9.8837 20 1 0.3354 3.0283 9.6448 21 1 -1.3402 1.3566 10.1720 22 6 1.8009 -3.5420 1.0779 23 6 2.9071 -4.1116 1.6803 24 6 3.3096 -5.3847 1.3238 25 6 2.6119 -6.0849 0.3557 26 17 3.1215 -7.6811 -0.0982 27 6 1.5082 -5.5121 -0.2509 28 6 1.1030 -4.2412 0.1108 29 1 -0.3633 0.0748 1.0250 30 1 -0.3633 0.8504 -0.5772 31 1 -0.3633 -0.9249 -0.4477 32 1 3.1715 -0.8752 -1.2682 33 1 1.6115 -1.8589 -1.2680 34 1 1.3203 -2.8697 3.4022 35 1 -0.4478 -1.2520 3.2668 36 1 0.7766 -0.0194 2.8801 37 1 -0.5514 0.7248 5.1001 38 1 -1.8146 2.7314 7.4491 39 1 3.4545 -3.5631 2.4326 40 1 4.1712 -5.8314 1.7976 41 1 0.9634 -6.0580 -1.0070 42 1 0.2412 -3.7941 -0.3623 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180021279.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:42:42 Heat of formation + Delta-G solvation = -15.161379 kcal Electronic energy + Delta-G solvation = -24288.702592 eV Core-core repulsion = 20680.119532 eV Total energy + Delta-G solvation = -3608.583059 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.119 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.02305 -40.00044 -38.94801 -37.37734 -36.24636 -35.60408 -33.27059 -32.28629 -31.99509 -29.42800 -28.62881 -26.74869 -25.13462 -23.77227 -23.16840 -21.81970 -21.07961 -20.03148 -19.88292 -18.31739 -17.72740 -17.12975 -16.95850 -16.44237 -16.21922 -15.91857 -15.79585 -15.32474 -15.17160 -14.58644 -14.38402 -14.25550 -14.19316 -14.06291 -13.84196 -13.48905 -13.25897 -12.99683 -12.79476 -12.65246 -12.43914 -12.39092 -12.35159 -12.17215 -12.10985 -11.99588 -11.74131 -11.50087 -10.89823 -10.60991 -10.32445 -9.99755 -9.97376 -9.53984 -9.33686 -8.45760 -5.94013 0.14011 0.35775 1.16487 1.36887 1.42185 1.56191 2.07182 2.29365 2.61455 2.87077 2.89887 3.21681 3.46655 3.73815 3.86856 3.95964 3.98801 4.07936 4.13621 4.30774 4.34090 4.41532 4.49849 4.50656 4.54020 4.61150 4.73256 4.79029 4.94688 4.99722 5.03073 5.06264 5.21629 5.25896 5.28433 5.37662 5.42266 5.47228 5.53597 5.84335 5.92891 6.12953 6.38724 6.61759 7.14351 7.58118 8.13752 8.71923 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.015573 B = 0.002770 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.535771 B =10107.215551 C =11441.844866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.155 4.155 3 H 0.100 0.900 4 C -0.156 4.156 5 C -0.145 4.145 6 H 0.091 0.909 7 C 0.162 3.838 8 H 0.071 0.929 9 N -0.670 5.670 10 C 0.070 3.930 11 C 0.440 3.560 12 O -0.621 6.621 13 N -0.574 5.574 14 C -0.331 4.331 15 H 0.078 0.922 16 C -0.013 4.013 17 N -0.920 5.920 18 Si 0.991 3.009 19 H -0.274 1.274 20 H -0.271 1.271 21 H -0.271 1.271 22 C -0.080 4.080 23 C -0.094 4.094 24 C -0.118 4.118 25 C -0.045 4.045 26 Cl -0.075 7.075 27 C -0.110 4.110 28 C -0.098 4.098 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.345 0.655 35 H 0.066 0.934 36 H 0.102 0.898 37 H 0.396 0.604 38 H 0.277 0.723 39 H 0.128 0.872 40 H 0.138 0.862 41 H 0.152 0.848 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.273 -10.638 -20.246 22.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.173 4.173 3 H 0.118 0.882 4 C -0.193 4.193 5 C -0.164 4.164 6 H 0.109 0.891 7 C 0.053 3.947 8 H 0.089 0.911 9 N -0.302 5.302 10 C -0.063 4.063 11 C 0.227 3.773 12 O -0.507 6.507 13 N -0.212 5.212 14 C -0.461 4.461 15 H 0.096 0.904 16 C -0.213 4.213 17 N -0.561 5.561 18 Si 0.815 3.185 19 H -0.199 1.199 20 H -0.197 1.197 21 H -0.196 1.196 22 C -0.080 4.080 23 C -0.113 4.113 24 C -0.136 4.136 25 C -0.071 4.071 26 Cl -0.046 7.046 27 C -0.129 4.129 28 C -0.116 4.116 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.115 0.885 33 H 0.123 0.877 34 H 0.165 0.835 35 H 0.084 0.916 36 H 0.120 0.880 37 H 0.230 0.770 38 H 0.087 0.913 39 H 0.146 0.854 40 H 0.156 0.844 41 H 0.170 0.830 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.283 -10.649 -19.868 22.779 hybrid contribution -0.727 0.026 0.917 1.171 sum 2.556 -10.622 -18.950 21.874 Atomic orbital electron populations 1.21440 0.92299 1.02778 1.01866 1.22480 0.95929 0.94475 1.04389 0.88172 1.23122 1.02690 1.00896 0.92611 1.22231 1.00785 0.99488 0.93939 0.89107 1.19989 0.97923 0.90218 0.86563 0.91092 1.60006 1.56044 1.10539 1.03649 1.21531 0.95590 0.97931 0.91218 1.20869 0.83722 0.82528 0.90144 1.90490 1.37610 1.51399 1.71229 1.41933 1.35579 1.34366 1.09311 1.19674 1.20656 1.19916 0.85809 0.90445 1.26012 0.95390 0.95424 1.04444 1.69676 1.23768 1.24064 1.38642 0.84896 0.78271 0.78216 0.77119 1.19861 1.19655 1.19575 1.19973 0.95814 0.95174 0.97081 1.21085 0.96430 0.94443 0.99334 1.21193 1.00665 0.94674 0.97116 1.21083 0.98433 0.87700 0.99916 1.98364 1.90709 1.23690 1.91840 1.21225 0.95512 0.95660 1.00493 1.21190 1.00107 0.93669 0.96666 0.92838 0.91192 0.91417 0.88496 0.87726 0.83541 0.91648 0.87968 0.77010 0.91337 0.85428 0.84422 0.83024 0.83034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 8.69 71.98 0.63 -1.52 16 2 C -0.15 -2.95 6.41 -10.80 -0.07 -3.01 16 3 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 4 C -0.16 -2.66 9.52 30.59 0.29 -2.37 16 5 C -0.15 -3.22 5.09 -10.80 -0.06 -3.28 16 6 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 7 C 0.16 3.66 2.28 44.17 0.10 3.76 16 8 H 0.07 1.43 5.56 -2.39 -0.01 1.42 16 9 N -0.67 -20.48 5.23 -499.45 -2.61 -23.09 16 10 C 0.07 2.34 5.60 85.56 0.48 2.82 16 11 C 0.44 20.83 7.83 87.66 0.69 21.52 16 12 O -0.62 -34.40 15.88 -3.05 -0.05 -34.45 16 13 N -0.57 -29.42 5.29 -306.99 -1.62 -31.04 16 14 C -0.33 -18.83 9.68 84.04 0.81 -18.02 16 15 H 0.08 4.73 7.16 -2.91 -0.02 4.70 16 16 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 17 N -0.92 -49.55 13.05 21.66 0.28 -49.26 16 18 Si 0.99 43.04 29.55 68.60 2.03 45.07 16 19 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 20 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 21 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 22 C -0.08 -1.67 4.37 -19.86 -0.09 -1.76 16 23 C -0.09 -2.18 9.04 22.26 0.20 -1.98 16 24 C -0.12 -2.47 9.83 22.29 0.22 -2.25 16 25 C -0.04 -0.86 6.32 22.33 0.14 -0.72 16 26 Cl -0.07 -1.35 28.96 -2.72 -0.08 -1.43 16 27 C -0.11 -1.82 9.83 22.29 0.22 -1.60 16 28 C -0.10 -1.63 9.23 22.27 0.21 -1.42 16 29 H 0.05 1.02 6.88 -2.38 -0.02 1.01 16 30 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.07 0.95 7.41 -2.39 -0.02 0.93 16 32 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.10 1.52 7.60 -2.39 -0.02 1.51 16 34 H 0.35 11.21 7.93 -89.69 -0.71 10.50 16 35 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.10 3.20 7.16 -2.39 -0.02 3.18 16 37 H 0.40 19.21 7.90 -92.71 -0.73 18.48 16 38 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 39 H 0.13 3.34 7.73 -2.91 -0.02 3.32 16 40 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 41 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 42 H 0.15 1.77 8.04 -2.91 -0.02 1.74 16 Total: -1.00 -65.36 366.97 1.80 -63.56 By element: Atomic # 1 Polarization: 41.10 SS G_CDS: -0.39 Total: 40.71 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: 4.24 Total: -10.06 kcal Atomic # 7 Polarization: -99.44 SS G_CDS: -3.95 Total: -103.39 kcal Atomic # 8 Polarization: -34.40 SS G_CDS: -0.05 Total: -34.45 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -0.08 Total: -1.43 kcal Total: -65.36 1.80 -63.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180021279.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.395 kcal (2) G-P(sol) polarization free energy of solvation -65.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds