Wall clock time and date at job start Sat Apr 11 2020 00:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 110.36772 * 2 1 4 4 C 1.53739 * 110.61755 * 237.64067 * 2 1 3 5 5 N 1.46541 * 105.19184 * 241.50375 * 4 2 1 6 6 C 1.34780 * 124.97995 * 179.86436 * 5 4 2 7 7 O 1.21586 * 119.99669 * 184.75596 * 6 5 4 8 8 N 1.34775 * 119.99935 * 4.74898 * 6 5 4 9 9 C 1.46506 * 119.99695 * 174.98234 * 8 6 5 10 10 C 1.52996 * 109.47136 * 179.72717 * 9 8 6 11 11 C 1.50697 * 109.47411 * 180.02562 * 10 9 8 12 12 H 1.08003 * 119.99494 * 359.97438 * 11 10 9 13 13 C 1.37880 * 120.00329 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99852 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 119.99654 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.46931 * 90.00407 * 15 13 11 17 17 H 1.48502 * 109.47138 * 209.99978 * 15 13 11 18 18 H 1.48488 * 109.47523 * 330.00358 * 15 13 11 19 19 C 1.39848 * 110.03695 * 359.59325 * 5 4 2 20 20 C 1.39644 * 129.33220 * 180.28475 * 19 5 4 21 21 C 1.37838 * 120.31640 * 179.97438 * 20 19 5 22 22 C 1.38278 * 120.24011 * 0.02562 * 21 20 19 23 23 C 1.38349 * 119.80845 * 359.97438 * 22 21 20 24 24 Cl 1.73596 * 119.94060 * 180.02562 * 23 22 21 25 25 C 1.38308 * 120.11997 * 359.97438 * 23 22 21 26 26 H 1.08996 * 109.46874 * 299.09654 * 1 2 3 27 27 H 1.08995 * 109.47248 * 59.09505 * 1 2 3 28 28 H 1.08998 * 109.46951 * 179.09745 * 1 2 3 29 29 H 1.09006 * 109.46928 * 180.90903 * 3 2 1 30 30 H 1.09003 * 109.47524 * 300.90187 * 3 2 1 31 31 H 1.08995 * 109.47636 * 60.90442 * 3 2 1 32 32 H 1.08999 * 110.42008 * 122.51146 * 4 2 1 33 33 H 1.09003 * 110.18371 * 0.36889 * 4 2 1 34 34 H 0.96994 * 120.00280 * 354.71076 * 8 6 5 35 35 H 1.09001 * 109.47106 * 299.72715 * 9 8 6 36 36 H 1.09000 * 109.47092 * 59.73035 * 9 8 6 37 37 H 1.09001 * 109.47121 * 299.99988 * 10 9 8 38 38 H 1.09005 * 109.47304 * 60.00018 * 10 9 8 39 39 H 0.96996 * 119.99534 * 179.97438 * 14 13 11 40 40 H 1.08003 * 119.83498 * 0.02562 * 20 19 5 41 41 H 1.08005 * 119.88311 * 179.97438 * 21 20 19 42 42 H 1.07996 * 120.09768 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0626 1.4343 0.0000 4 6 2.0714 -0.7701 -1.2155 5 7 2.8382 -1.8852 -0.6532 6 6 3.4863 -2.8197 -1.3765 7 8 4.0238 -3.7562 -0.8175 8 7 3.5386 -2.7161 -2.7192 9 6 4.3344 -3.6691 -3.4970 10 6 4.2181 -3.3353 -4.9855 11 6 5.0362 -4.3159 -5.7857 12 1 5.5845 -5.0987 -5.2826 13 6 5.0855 -4.2132 -7.1597 14 7 5.7998 -5.0687 -7.8579 15 14 4.1376 -2.8588 -8.0296 16 1 4.9985 -1.6555 -8.1571 17 1 3.7357 -3.3253 -9.3809 18 1 2.9253 -2.5188 -7.2424 19 6 2.8038 -1.8340 0.7440 20 6 3.3977 -2.6878 1.6758 21 6 3.2416 -2.4604 3.0263 22 6 2.4946 -1.3845 3.4696 23 6 1.9029 -0.5338 2.5530 24 17 0.9649 0.8184 3.1057 25 6 2.0581 -0.7581 1.1970 26 1 -0.3633 0.4997 0.8980 27 1 -0.3633 0.5278 -0.8817 28 1 -0.3633 -1.0275 -0.0162 29 1 3.1524 1.4172 -0.0163 30 1 1.6943 1.9587 -0.8818 31 1 1.7206 1.9489 0.8979 32 1 2.7192 -0.1295 -1.8139 33 1 1.2463 -1.1458 -1.8206 34 1 3.0462 -2.0131 -3.1709 35 1 5.3785 -3.6056 -3.1908 36 1 3.9650 -4.6795 -3.3213 37 1 3.1739 -3.3988 -5.2917 38 1 4.5875 -2.3249 -5.1613 39 1 5.8342 -4.9966 -8.8245 40 1 3.9828 -3.5298 1.3366 41 1 3.7037 -3.1255 3.7409 42 1 2.3741 -1.2083 4.5282 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273220920.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:42:59 Heat of formation + Delta-G solvation = -12.760464 kcal Electronic energy + Delta-G solvation = -24748.064723 eV Core-core repulsion = 21139.585776 eV Total energy + Delta-G solvation = -3608.478948 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.119 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.62973 -39.20764 -37.27655 -36.61002 -35.22280 -34.28574 -32.87422 -30.70048 -30.24428 -29.44390 -27.64810 -26.87019 -24.99628 -23.27049 -22.70407 -20.89755 -20.37598 -19.95043 -18.14197 -17.09679 -16.71667 -16.29486 -16.09379 -15.45875 -15.07143 -14.73934 -14.50605 -14.24154 -14.04645 -13.92879 -13.78925 -13.55973 -13.37244 -12.67945 -12.65126 -12.55148 -12.20278 -12.14058 -11.85841 -11.84807 -11.55174 -11.50899 -11.27502 -11.08758 -10.76061 -10.49538 -10.36507 -10.29896 -10.04352 -9.88847 -9.38833 -8.89505 -8.79498 -8.64790 -7.93822 -6.15348 -4.15974 0.97662 1.05765 1.84947 2.42366 3.08820 3.21454 3.29009 3.30230 3.55011 3.84711 4.01258 4.18874 4.33390 4.56790 4.68371 4.77804 5.02850 5.04745 5.17306 5.17365 5.23060 5.24138 5.32666 5.35364 5.53110 5.55503 5.62292 5.78905 5.86793 5.95877 5.98833 6.07022 6.13162 6.17018 6.27310 6.47669 6.58155 6.68884 6.95008 7.11084 7.15912 7.60813 7.91737 8.38852 8.55635 8.88774 9.44298 10.97627 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.022948 B = 0.002864 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.840710 B = 9774.924329 C =10782.419567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.021 4.021 3 C -0.141 4.141 4 C 0.101 3.899 5 N -0.569 5.569 6 C 0.711 3.289 7 O -0.569 6.569 8 N -0.731 5.731 9 C 0.146 3.854 10 C -0.021 4.021 11 C -0.524 4.524 12 H 0.077 0.923 13 C 0.070 3.930 14 N -0.897 5.897 15 Si 0.882 3.118 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.266 1.266 19 C 0.195 3.805 20 C -0.132 4.132 21 C -0.078 4.078 22 C -0.144 4.144 23 C 0.013 3.987 24 Cl -0.072 7.072 25 C -0.133 4.133 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.394 0.606 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.022 0.978 38 H 0.018 0.982 39 H 0.265 0.735 40 H 0.148 0.852 41 H 0.137 0.863 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.658 14.443 21.268 28.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.021 4.021 3 C -0.198 4.198 4 C -0.021 4.021 5 N -0.294 5.294 6 C 0.413 3.587 7 O -0.445 6.445 8 N -0.384 5.384 9 C 0.024 3.976 10 C -0.059 4.059 11 C -0.562 4.562 12 H 0.095 0.905 13 C -0.132 4.132 14 N -0.535 5.535 15 Si 0.709 3.291 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.191 1.191 19 C 0.097 3.903 20 C -0.153 4.153 21 C -0.097 4.097 22 C -0.164 4.164 23 C -0.014 4.014 24 Cl -0.043 7.043 25 C -0.137 4.137 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.228 0.772 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.041 0.959 38 H 0.036 0.964 39 H 0.075 0.925 40 H 0.166 0.834 41 H 0.155 0.845 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.189 13.709 21.289 27.683 hybrid contribution -0.714 1.082 -0.885 1.569 sum -11.903 14.791 20.403 27.870 Atomic orbital electron populations 1.21912 0.92194 1.02627 1.02998 1.20000 0.96698 0.95412 0.90035 1.21924 1.01342 0.93524 1.02998 1.22391 0.95761 0.87463 0.96469 1.45101 1.52188 1.28155 1.04003 1.15691 0.79271 0.81456 0.82264 1.90893 1.50779 1.32402 1.70439 1.45598 1.53144 1.35773 1.03877 1.21510 0.93859 0.90906 0.91372 1.19798 0.97886 0.97751 0.90446 1.20883 1.29584 1.14303 0.91434 0.90528 1.24994 0.94936 0.95883 0.97413 1.69899 1.40293 1.36435 1.06882 0.86753 0.80821 0.82391 0.79110 1.20197 1.21218 1.19117 1.17973 0.95337 0.94294 0.82704 1.21141 1.01775 1.00852 0.91565 1.20880 0.97268 0.96600 0.94939 1.20881 1.00541 0.95821 0.99189 1.20007 0.98341 0.91650 0.91415 1.98346 1.71753 1.44689 1.89482 1.19559 1.03267 0.98348 0.92573 0.91252 0.91600 0.92171 0.92146 0.91597 0.91268 0.89546 0.89612 0.77225 0.91819 0.91648 0.95950 0.96404 0.92485 0.83389 0.84545 0.84771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 8.32 37.16 0.31 -0.80 16 2 C -0.02 -0.19 0.82 -155.03 -0.13 -0.32 16 3 C -0.14 -1.12 8.30 37.15 0.31 -0.81 16 4 C 0.10 1.02 5.64 -3.64 -0.02 1.00 16 5 N -0.57 -7.84 3.13 -118.25 -0.37 -8.21 16 6 C 0.71 12.08 8.42 -86.92 -0.73 11.35 16 7 O -0.57 -11.48 14.54 5.29 0.08 -11.40 16 8 N -0.73 -12.00 5.51 -65.22 -0.36 -12.36 16 9 C 0.15 2.90 5.62 -4.04 -0.02 2.88 16 10 C -0.02 -0.47 4.16 -27.89 -0.12 -0.58 16 11 C -0.52 -14.40 9.66 -34.44 -0.33 -14.73 16 12 H 0.08 2.29 7.99 -52.48 -0.42 1.87 16 13 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 14 N -0.90 -26.97 13.96 55.43 0.77 -26.20 16 15 Si 0.88 20.65 27.47 -169.99 -4.67 15.98 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 17 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.27 -5.86 6.54 56.52 0.37 -5.49 16 19 C 0.19 2.61 6.62 -83.57 -0.55 2.06 16 20 C -0.13 -1.73 9.46 -39.20 -0.37 -2.10 16 21 C -0.08 -0.79 10.02 -39.71 -0.40 -1.18 16 22 C -0.14 -1.36 9.84 -39.53 -0.39 -1.75 16 23 C 0.01 0.13 6.32 -39.51 -0.25 -0.12 16 24 Cl -0.07 -0.63 25.61 -51.86 -1.33 -1.96 16 25 C -0.13 -1.49 4.78 -104.24 -0.50 -1.98 16 26 H 0.07 0.54 6.58 -51.93 -0.34 0.20 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.54 6.56 -51.93 -0.34 0.20 16 32 H 0.09 0.77 7.69 -51.93 -0.40 0.37 16 33 H 0.09 0.76 7.71 -51.93 -0.40 0.36 16 34 H 0.39 5.39 7.42 -40.82 -0.30 5.09 16 35 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.02 0.49 7.20 -51.93 -0.37 0.11 16 38 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 39 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.15 2.20 6.29 -52.48 -0.33 1.87 16 41 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 42 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 LS Contribution 352.69 15.07 5.31 5.31 Total: -1.00 -31.72 352.69 -9.70 -41.42 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -5.85 Total: 2.62 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -3.29 Total: -5.21 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: 0.04 Total: -46.76 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.08 Total: -11.40 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.67 Total: 15.98 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.33 Total: -1.96 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.72 -9.70 -41.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273220920.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.657 kcal (2) G-P(sol) polarization free energy of solvation -31.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds