Wall clock time and date at job start Sat Apr 11 2020 00:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50705 * 120.00109 * 2 1 4 4 N 1.46497 * 109.47033 * 124.99795 * 3 2 1 5 5 C 1.46494 * 120.00278 * 270.00046 * 4 3 2 6 6 C 1.50695 * 109.47500 * 270.00027 * 5 4 3 7 7 H 1.08006 * 119.99928 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00238 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00055 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 120.00112 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.46873 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47419 * 120.00106 * 10 8 6 13 13 H 1.48497 * 109.47022 * 240.00102 * 10 8 6 14 14 C 1.34777 * 119.99928 * 90.00535 * 4 3 2 15 15 O 1.21586 * 120.00436 * 179.97438 * 14 4 3 16 16 N 1.34779 * 119.99570 * 359.97438 * 14 4 3 17 17 C 1.39947 * 119.99681 * 184.59408 * 16 14 4 18 18 C 1.38902 * 120.06660 * 324.91254 * 17 16 14 19 19 C 1.38089 * 119.95795 * 179.97438 * 18 17 16 20 20 C 1.38287 * 120.08507 * 359.97438 * 19 18 17 21 21 C 1.50702 * 119.93974 * 179.97438 * 20 19 18 22 22 C 1.53000 * 109.46852 * 265.02418 * 21 20 19 23 23 C 1.38379 * 120.12558 * 0.02562 * 20 19 18 24 24 Cl 1.73595 * 119.97862 * 179.97438 * 23 20 19 25 25 C 1.38252 * 120.04163 * 0.27509 * 23 20 19 26 26 H 1.08009 * 120.00350 * 179.97438 * 1 2 3 27 27 H 1.08003 * 120.00154 * 0.02562 * 1 2 3 28 28 H 1.08003 * 120.00154 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.46716 * 5.00218 * 3 2 1 30 30 H 1.09001 * 109.47017 * 245.00391 * 3 2 1 31 31 H 1.09001 * 109.47214 * 30.00248 * 5 4 3 32 32 H 1.09002 * 109.47015 * 149.99750 * 5 4 3 33 33 H 0.97002 * 119.99829 * 180.02562 * 9 8 6 34 34 H 0.97001 * 120.00795 * 4.59686 * 16 14 4 35 35 H 1.07999 * 120.01822 * 359.95808 * 18 17 16 36 36 H 1.07997 * 119.96036 * 179.97438 * 19 18 17 37 37 H 1.09004 * 109.47011 * 25.01929 * 21 20 19 38 38 H 1.08995 * 109.47451 * 145.02157 * 21 20 19 39 39 H 1.09003 * 109.47357 * 299.99865 * 22 21 20 40 40 H 1.09004 * 109.47574 * 59.99677 * 22 21 20 41 41 H 1.08996 * 109.47234 * 179.97438 * 22 21 20 42 42 H 1.08004 * 120.03916 * 179.69493 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5588 1.8649 2.4248 6 6 2.8442 3.3436 2.4805 7 1 3.3033 3.8371 1.6365 8 6 2.5184 4.0666 3.6083 9 7 1.9590 3.4658 4.6358 10 14 2.8715 5.8997 3.6770 11 1 3.5005 6.3307 2.4026 12 1 1.6009 6.6415 3.8781 13 1 3.7945 6.1840 4.8050 14 6 4.2496 0.8662 0.9824 15 8 5.0219 0.8888 1.9213 16 7 4.6496 0.3755 -0.2074 17 6 5.9205 -0.1959 -0.3372 18 6 6.9918 0.3195 0.3812 19 6 8.2448 -0.2463 0.2519 20 6 8.4342 -1.3258 -0.5915 21 6 9.8032 -1.9404 -0.7305 22 6 10.5138 -1.3339 -1.9422 23 6 7.3694 -1.8420 -1.3088 24 17 7.6118 -3.1967 -2.3669 25 6 6.1140 -1.2756 -1.1880 26 1 -0.5401 -0.9353 -0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3585 2.1316 0.0896 30 1 2.6212 1.4026 -0.9314 31 1 1.4887 1.6966 2.5459 32 1 3.0989 1.3602 3.2259 33 1 1.7294 3.9746 5.4291 34 1 4.0566 0.4183 -0.9739 35 1 6.8449 1.1624 1.0403 36 1 9.0778 0.1546 0.8101 37 1 10.3846 -1.7399 0.1695 38 1 9.7058 -3.0172 -0.8678 39 1 9.9324 -1.5342 -2.8422 40 1 10.6112 -0.2569 -1.8049 41 1 11.5041 -1.7780 -2.0426 42 1 5.2840 -1.6755 -1.7517 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296882106.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:43:29 Heat of formation + Delta-G solvation = 10.646039 kcal Electronic energy + Delta-G solvation = -24423.679029 eV Core-core repulsion = 20816.215064 eV Total energy + Delta-G solvation = -3607.463966 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.43793 -38.94750 -36.60537 -35.90672 -35.07954 -33.28553 -32.92583 -32.04541 -30.71133 -28.70656 -27.35036 -25.58332 -24.03988 -22.95915 -22.68484 -21.00849 -20.12527 -19.37179 -18.05094 -17.14180 -16.53289 -15.80456 -15.75539 -15.31952 -14.88316 -14.50909 -14.34008 -14.12163 -13.88646 -13.82527 -13.44235 -13.40742 -12.82884 -12.78379 -12.33519 -12.19682 -11.90366 -11.79376 -11.45873 -11.36669 -11.32148 -11.13643 -10.99113 -10.91428 -10.78617 -10.64427 -10.22098 -9.95892 -9.68853 -9.32109 -9.27310 -8.75529 -8.46752 -8.03806 -7.66576 -6.07366 -4.12337 1.24995 1.27541 2.05048 2.35509 3.16981 3.27644 3.35636 3.39605 3.52586 3.91908 4.32015 4.46701 4.69619 4.72308 5.01842 5.11317 5.23908 5.26844 5.28457 5.31544 5.37958 5.42152 5.48506 5.60921 5.71632 5.79307 5.85787 5.91836 6.08037 6.08503 6.20260 6.34597 6.46889 6.62517 6.70239 6.74338 6.87518 7.10676 7.31266 7.44626 7.59831 7.89954 8.18873 8.47828 8.88226 9.14142 9.53106 11.00555 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.015167 B = 0.003237 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.671026 B = 8648.338374 C =10091.757791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.173 4.173 3 C 0.137 3.863 4 N -0.601 5.601 5 C 0.261 3.739 6 C -0.528 4.528 7 H 0.058 0.942 8 C 0.062 3.938 9 N -0.893 5.893 10 Si 0.898 3.102 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.699 3.301 15 O -0.565 6.565 16 N -0.695 5.695 17 C 0.190 3.810 18 C -0.112 4.112 19 C -0.087 4.087 20 C -0.101 4.101 21 C -0.083 4.083 22 C -0.146 4.146 23 C -0.014 4.014 24 Cl -0.076 7.076 25 C -0.147 4.147 26 H 0.095 0.905 27 H 0.100 0.900 28 H 0.104 0.896 29 H 0.093 0.907 30 H 0.067 0.933 31 H 0.035 0.965 32 H 0.045 0.955 33 H 0.263 0.737 34 H 0.403 0.597 35 H 0.152 0.848 36 H 0.132 0.868 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.283 -10.802 -15.272 20.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.192 4.192 3 C 0.013 3.987 4 N -0.334 5.334 5 C 0.142 3.858 6 C -0.567 4.567 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.532 5.532 10 Si 0.726 3.274 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.401 3.599 15 O -0.441 6.441 16 N -0.345 5.345 17 C 0.092 3.908 18 C -0.132 4.132 19 C -0.106 4.106 20 C -0.103 4.103 21 C -0.121 4.121 22 C -0.203 4.203 23 C -0.042 4.042 24 Cl -0.047 7.047 25 C -0.169 4.169 26 H 0.113 0.887 27 H 0.118 0.882 28 H 0.122 0.878 29 H 0.111 0.889 30 H 0.085 0.915 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.240 0.760 35 H 0.169 0.831 36 H 0.150 0.850 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 8.678 -10.797 -14.402 19.983 hybrid contribution -0.383 0.858 -0.341 1.000 sum 8.295 -9.939 -14.743 19.620 Atomic orbital electron populations 1.23833 0.95797 1.01864 1.00017 1.23434 0.96524 0.98911 1.00375 1.20545 0.93211 0.95788 0.89200 1.47599 1.08677 1.62895 1.14279 1.19258 0.95328 0.93627 0.77564 1.21480 1.40566 0.93314 1.01296 0.92384 1.24925 0.95041 0.98760 0.95311 1.69943 1.42004 1.36092 1.05193 0.86449 0.77916 0.84942 0.78138 1.19825 1.20980 1.20858 1.15923 0.83311 0.78607 0.82024 1.90893 1.52610 1.61327 1.39281 1.42977 1.15509 1.63548 1.12469 1.17352 0.84734 0.91988 0.96676 1.21596 0.90588 1.01210 0.99850 1.20903 0.97222 0.94970 0.97477 1.19653 0.94833 0.97657 0.98132 1.20519 0.91938 1.00237 0.99382 1.21728 0.99792 1.00970 0.97801 1.20331 0.94351 0.92441 0.97039 1.98336 1.97082 1.44408 1.64847 1.20627 0.96476 0.96218 1.03587 0.88698 0.88184 0.87769 0.88917 0.91538 0.94692 0.93676 0.92733 0.76025 0.83075 0.85029 0.90855 0.90708 0.92447 0.92541 0.92518 0.85024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.19 14.32 29.02 0.42 -1.77 16 2 C -0.17 -2.35 9.85 -36.02 -0.35 -2.70 16 3 C 0.14 2.10 5.65 -5.19 -0.03 2.07 16 4 N -0.60 -12.27 2.44 -182.19 -0.44 -12.72 16 5 C 0.26 6.66 5.16 -5.20 -0.03 6.63 16 6 C -0.53 -14.58 9.39 -34.44 -0.32 -14.90 16 7 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 8 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 9 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 10 Si 0.90 21.52 29.54 -169.99 -5.02 16.49 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 14 C 0.70 14.32 8.12 -86.92 -0.71 13.61 16 15 O -0.57 -13.85 13.36 5.29 0.07 -13.78 16 16 N -0.70 -10.85 5.22 -14.22 -0.07 -10.92 16 17 C 0.19 2.86 6.30 -83.69 -0.53 2.34 16 18 C -0.11 -1.77 8.69 -39.39 -0.34 -2.12 16 19 C -0.09 -1.13 9.67 -39.62 -0.38 -1.52 16 20 C -0.10 -1.21 5.14 -104.55 -0.54 -1.75 16 21 C -0.08 -0.80 5.57 -27.88 -0.16 -0.95 16 22 C -0.15 -1.23 9.89 37.16 0.37 -0.87 16 23 C -0.01 -0.18 6.31 -39.52 -0.25 -0.43 16 24 Cl -0.08 -0.81 27.14 -51.86 -1.41 -2.21 16 25 C -0.15 -1.88 9.75 -39.36 -0.38 -2.27 16 26 H 0.09 1.02 8.06 -52.48 -0.42 0.59 16 27 H 0.10 1.21 7.84 -52.48 -0.41 0.79 16 28 H 0.10 1.37 8.06 -52.48 -0.42 0.95 16 29 H 0.09 1.48 7.72 -51.93 -0.40 1.08 16 30 H 0.07 0.82 6.30 -51.93 -0.33 0.50 16 31 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 32 H 0.05 1.31 7.42 -51.93 -0.39 0.92 16 33 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 34 H 0.40 5.01 6.52 -40.82 -0.27 4.74 16 35 H 0.15 2.80 6.22 -52.49 -0.33 2.47 16 36 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 37 H 0.07 0.63 8.05 -51.93 -0.42 0.21 16 38 H 0.07 0.70 7.12 -51.93 -0.37 0.33 16 39 H 0.06 0.51 7.89 -51.93 -0.41 0.10 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.13 1.43 8.06 -52.48 -0.42 1.00 16 LS Contribution 369.36 15.07 5.57 5.57 Total: -1.00 -31.57 369.36 -9.72 -41.29 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -5.82 Total: 4.67 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -3.33 Total: -2.98 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: 0.22 Total: -49.04 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: 0.07 Total: -13.78 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.41 Total: -2.21 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.57 -9.72 -41.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296882106.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.934 kcal (2) G-P(sol) polarization free energy of solvation -31.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds