Wall clock time and date at job start Sat Apr 11 2020 00:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50705 * 120.00109 * 2 1 4 4 N 1.46497 * 109.47033 * 124.99795 * 3 2 1 5 5 C 1.46494 * 120.00278 * 270.00046 * 4 3 2 6 6 C 1.50695 * 109.47500 * 270.00027 * 5 4 3 7 7 H 1.08006 * 119.99928 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00238 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00055 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 120.00112 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.46873 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47419 * 120.00106 * 10 8 6 13 13 H 1.48497 * 109.47022 * 240.00102 * 10 8 6 14 14 C 1.34777 * 119.99928 * 90.00535 * 4 3 2 15 15 O 1.21586 * 120.00436 * 179.97438 * 14 4 3 16 16 N 1.34779 * 119.99570 * 359.97438 * 14 4 3 17 17 C 1.39947 * 119.99681 * 184.59408 * 16 14 4 18 18 C 1.38902 * 120.06660 * 324.91254 * 17 16 14 19 19 C 1.38089 * 119.95795 * 179.97438 * 18 17 16 20 20 C 1.38287 * 120.08507 * 359.97438 * 19 18 17 21 21 C 1.50702 * 119.93974 * 179.97438 * 20 19 18 22 22 C 1.53000 * 109.46852 * 265.02418 * 21 20 19 23 23 C 1.38379 * 120.12558 * 0.02562 * 20 19 18 24 24 Cl 1.73595 * 119.97862 * 179.97438 * 23 20 19 25 25 C 1.38252 * 120.04163 * 0.27509 * 23 20 19 26 26 H 1.08009 * 120.00350 * 179.97438 * 1 2 3 27 27 H 1.08003 * 120.00154 * 0.02562 * 1 2 3 28 28 H 1.08003 * 120.00154 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.46716 * 5.00218 * 3 2 1 30 30 H 1.09001 * 109.47017 * 245.00391 * 3 2 1 31 31 H 1.09001 * 109.47214 * 30.00248 * 5 4 3 32 32 H 1.09002 * 109.47015 * 149.99750 * 5 4 3 33 33 H 0.97002 * 119.99829 * 180.02562 * 9 8 6 34 34 H 0.97001 * 120.00795 * 4.59686 * 16 14 4 35 35 H 1.07999 * 120.01822 * 359.95808 * 18 17 16 36 36 H 1.07997 * 119.96036 * 179.97438 * 19 18 17 37 37 H 1.09004 * 109.47011 * 25.01929 * 21 20 19 38 38 H 1.08995 * 109.47451 * 145.02157 * 21 20 19 39 39 H 1.09003 * 109.47357 * 299.99865 * 22 21 20 40 40 H 1.09004 * 109.47574 * 59.99677 * 22 21 20 41 41 H 1.08996 * 109.47234 * 179.97438 * 22 21 20 42 42 H 1.08004 * 120.03916 * 179.69493 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5588 1.8649 2.4248 6 6 2.8442 3.3436 2.4805 7 1 3.3033 3.8371 1.6365 8 6 2.5184 4.0666 3.6083 9 7 1.9590 3.4658 4.6358 10 14 2.8715 5.8997 3.6770 11 1 3.5005 6.3307 2.4026 12 1 1.6009 6.6415 3.8781 13 1 3.7945 6.1840 4.8050 14 6 4.2496 0.8662 0.9824 15 8 5.0219 0.8888 1.9213 16 7 4.6496 0.3755 -0.2074 17 6 5.9205 -0.1959 -0.3372 18 6 6.9918 0.3195 0.3812 19 6 8.2448 -0.2463 0.2519 20 6 8.4342 -1.3258 -0.5915 21 6 9.8032 -1.9404 -0.7305 22 6 10.5138 -1.3339 -1.9422 23 6 7.3694 -1.8420 -1.3088 24 17 7.6118 -3.1967 -2.3669 25 6 6.1140 -1.2756 -1.1880 26 1 -0.5401 -0.9353 -0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3585 2.1316 0.0896 30 1 2.6212 1.4026 -0.9314 31 1 1.4887 1.6966 2.5459 32 1 3.0989 1.3602 3.2259 33 1 1.7294 3.9746 5.4291 34 1 4.0566 0.4183 -0.9739 35 1 6.8449 1.1624 1.0403 36 1 9.0778 0.1546 0.8101 37 1 10.3846 -1.7399 0.1695 38 1 9.7058 -3.0172 -0.8678 39 1 9.9324 -1.5342 -2.8422 40 1 10.6112 -0.2569 -1.8049 41 1 11.5041 -1.7780 -2.0426 42 1 5.2840 -1.6755 -1.7517 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296882106.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:43:28 Heat of formation + Delta-G solvation = -5.952299 kcal Electronic energy + Delta-G solvation = -24424.398787 eV Core-core repulsion = 20816.215064 eV Total energy + Delta-G solvation = -3608.183724 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.119 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.80756 -40.16958 -37.69202 -37.22518 -36.34679 -35.08185 -34.03491 -33.59161 -31.77234 -30.07676 -28.89698 -26.98181 -25.45520 -24.15635 -24.03082 -22.09327 -21.35783 -20.68757 -19.41297 -18.60398 -18.49009 -17.05683 -16.92904 -16.66577 -16.31549 -16.07911 -15.60295 -15.40480 -15.00916 -14.75983 -14.68638 -14.52236 -14.28987 -14.13407 -13.72572 -13.32743 -13.16797 -12.98267 -12.89208 -12.86794 -12.60162 -12.41798 -12.30412 -12.26526 -12.19450 -11.76298 -11.66988 -11.65594 -11.23578 -10.90109 -10.64086 -10.36053 -9.81132 -9.60148 -8.98262 -8.21156 -6.35817 0.15830 0.22175 1.05090 1.26366 1.37226 1.39658 1.51153 1.82751 2.10906 2.39008 2.68506 2.99463 3.09116 3.78275 3.81957 3.99345 4.11382 4.17356 4.23313 4.31157 4.38170 4.50023 4.55682 4.70647 4.72373 4.78633 4.92591 5.02893 5.03142 5.11673 5.17920 5.22046 5.28499 5.39783 5.46536 5.48971 5.54443 5.68538 5.73577 5.89003 5.91826 6.03763 6.06360 6.73185 6.98943 7.31064 7.58454 8.85672 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.015167 B = 0.003237 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.671026 B = 8648.338374 C =10091.757791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.188 4.188 3 C 0.133 3.867 4 N -0.606 5.606 5 C 0.281 3.719 6 C -0.541 4.541 7 H 0.053 0.947 8 C 0.010 3.990 9 N -0.927 5.927 10 Si 0.966 3.034 11 H -0.268 1.268 12 H -0.269 1.269 13 H -0.283 1.283 14 C 0.696 3.304 15 O -0.615 6.615 16 N -0.675 5.675 17 C 0.165 3.835 18 C -0.135 4.135 19 C -0.088 4.088 20 C -0.093 4.093 21 C -0.084 4.084 22 C -0.143 4.143 23 C -0.020 4.020 24 Cl -0.055 7.055 25 C -0.136 4.136 26 H 0.116 0.884 27 H 0.101 0.899 28 H 0.110 0.890 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.026 0.974 32 H -0.001 1.001 33 H 0.267 0.733 34 H 0.419 0.581 35 H 0.116 0.884 36 H 0.148 0.852 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.074 0.926 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.844 -11.510 -17.554 22.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.207 4.207 3 C 0.011 3.989 4 N -0.339 5.339 5 C 0.160 3.840 6 C -0.580 4.580 7 H 0.072 0.928 8 C -0.189 4.189 9 N -0.567 5.567 10 Si 0.791 3.209 11 H -0.192 1.192 12 H -0.195 1.195 13 H -0.209 1.209 14 C 0.398 3.602 15 O -0.495 6.495 16 N -0.326 5.326 17 C 0.069 3.931 18 C -0.156 4.156 19 C -0.107 4.107 20 C -0.095 4.095 21 C -0.121 4.121 22 C -0.200 4.200 23 C -0.047 4.047 24 Cl -0.026 7.026 25 C -0.157 4.157 26 H 0.134 0.866 27 H 0.120 0.880 28 H 0.128 0.872 29 H 0.103 0.897 30 H 0.116 0.884 31 H 0.044 0.956 32 H 0.017 0.983 33 H 0.076 0.924 34 H 0.259 0.741 35 H 0.134 0.866 36 H 0.166 0.834 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 9.227 -11.533 -16.771 22.348 hybrid contribution -0.510 0.960 0.307 1.130 sum 8.716 -10.572 -16.465 21.421 Atomic orbital electron populations 1.24063 0.95441 1.03000 0.97625 1.23301 0.96911 0.98035 1.02472 1.20794 0.92794 0.96810 0.88485 1.47416 1.09696 1.62801 1.14036 1.18645 0.93874 0.92480 0.79019 1.21735 1.40470 0.94403 1.01364 0.92849 1.25812 0.94698 1.03569 0.94860 1.70056 1.42840 1.37988 1.05800 0.85389 0.78172 0.79248 0.78107 1.19206 1.19463 1.20858 1.16066 0.82810 0.78490 0.82794 1.90859 1.53955 1.63243 1.41405 1.42572 1.16069 1.62722 1.11226 1.17495 0.84035 0.93394 0.98154 1.21448 0.92436 1.01252 1.00438 1.21051 0.96580 0.95220 0.97804 1.19962 0.96163 0.96656 0.96724 1.20610 0.90572 1.00352 1.00556 1.21710 1.00506 1.00921 0.96880 1.20491 0.94207 0.92886 0.97151 1.98346 1.96995 1.43185 1.64056 1.20768 0.97516 0.94926 1.02481 0.86584 0.88026 0.87177 0.89663 0.88383 0.95568 0.98315 0.92420 0.74114 0.86613 0.83427 0.89681 0.90157 0.92892 0.92749 0.90748 0.82758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.75 14.32 67.79 0.97 -2.78 16 2 C -0.19 -4.88 9.85 25.66 0.25 -4.63 16 3 C 0.13 4.05 5.65 85.64 0.48 4.53 16 4 N -0.61 -25.58 2.44 -848.58 -2.07 -27.65 16 5 C 0.28 15.06 5.16 85.63 0.44 15.50 16 6 C -0.54 -30.86 9.39 25.60 0.24 -30.62 16 7 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 8 C 0.01 0.56 5.46 84.65 0.46 1.02 16 9 N -0.93 -55.68 13.29 21.45 0.28 -55.39 16 10 Si 0.97 44.67 29.54 68.60 2.03 46.69 16 11 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 12 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 13 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 14 C 0.70 29.65 8.12 179.05 1.45 31.11 16 15 O -0.62 -32.11 13.36 -3.99 -0.05 -32.16 16 16 N -0.68 -21.16 5.22 -317.18 -1.65 -22.81 16 17 C 0.17 5.00 6.30 38.15 0.24 5.24 16 18 C -0.13 -4.44 8.69 22.39 0.19 -4.25 16 19 C -0.09 -2.28 9.67 22.25 0.22 -2.06 16 20 C -0.09 -2.09 5.14 -19.82 -0.10 -2.19 16 21 C -0.08 -1.39 5.57 29.85 0.17 -1.22 16 22 C -0.14 -2.06 9.89 71.98 0.71 -1.35 16 23 C -0.02 -0.45 6.31 22.31 0.14 -0.31 16 24 Cl -0.05 -1.02 27.14 -2.72 -0.07 -1.10 16 25 C -0.14 -3.25 9.75 22.41 0.22 -3.03 16 26 H 0.12 2.19 8.06 -2.91 -0.02 2.16 16 27 H 0.10 2.30 7.84 -2.91 -0.02 2.28 16 28 H 0.11 2.75 8.06 -2.91 -0.02 2.72 16 29 H 0.08 2.71 7.72 -2.39 -0.02 2.69 16 30 H 0.10 2.29 6.30 -2.39 -0.02 2.28 16 31 H 0.03 1.43 8.07 -2.39 -0.02 1.41 16 32 H 0.00 -0.08 7.42 -2.39 -0.02 -0.10 16 33 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 34 H 0.42 9.95 6.52 -92.71 -0.60 9.34 16 35 H 0.12 4.66 6.22 -2.91 -0.02 4.64 16 36 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 37 H 0.08 1.24 8.05 -2.38 -0.02 1.22 16 38 H 0.08 1.28 7.12 -2.39 -0.02 1.26 16 39 H 0.05 0.81 7.89 -2.39 -0.02 0.79 16 40 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 41 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -71.54 369.36 4.98 -66.56 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 0.42 Total: 20.92 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: 6.09 Total: 4.94 kcal Atomic # 7 Polarization: -102.42 SS G_CDS: -3.44 Total: -105.86 kcal Atomic # 8 Polarization: -32.11 SS G_CDS: -0.05 Total: -32.16 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.07 Total: -1.10 kcal Total: -71.54 4.98 -66.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296882106.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.609 kcal (2) G-P(sol) polarization free energy of solvation -71.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds