Wall clock time and date at job start Sat Apr 11 2020 00:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38349 * 119.44718 * 2 1 4 4 C 1.38349 * 119.34164 * 180.27780 * 3 2 1 5 5 C 1.50694 * 120.85141 * 179.72312 * 4 3 2 6 6 C 1.40019 * 118.30391 * 359.50522 * 4 3 2 7 7 C 1.47748 * 120.57182 * 180.23934 * 6 4 3 8 8 O 1.21559 * 120.00556 * 270.25182 * 7 6 4 9 9 N 1.34780 * 119.99827 * 90.25522 * 7 6 4 10 10 C 1.46500 * 120.00343 * 180.02562 * 9 7 6 11 11 H 1.09003 * 110.01538 * 325.06474 * 10 9 7 12 12 C 1.53878 * 110.03145 * 86.45172 * 10 9 7 13 13 C 1.54262 * 106.59927 * 119.29036 * 12 10 9 14 14 C 1.54890 * 104.19479 * 23.60596 * 13 12 10 15 15 H 1.09007 * 110.75582 * 80.56498 * 14 13 12 16 16 C 1.50701 * 110.75713 * 203.74289 * 14 13 12 17 17 H 1.07996 * 119.99880 * 118.54699 * 16 14 13 18 18 C 1.37882 * 120.00235 * 298.55382 * 16 14 13 19 19 N 1.31512 * 119.99706 * 359.97438 * 18 16 14 20 20 Si 1.86793 * 120.00011 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47441 * 59.99645 * 20 18 16 22 22 H 1.48500 * 109.47114 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.47021 * 299.99628 * 20 18 16 24 24 C 1.54260 * 110.03646 * 203.61862 * 10 9 7 25 25 C 1.39722 * 118.86089 * 0.49074 * 6 4 3 26 26 Cl 1.73591 * 119.73763 * 179.77218 * 25 6 4 27 27 N 1.31819 * 120.52183 * 359.75278 * 25 6 4 28 28 H 1.09003 * 109.47232 * 90.00143 * 1 2 3 29 29 H 1.09002 * 109.47034 * 210.00018 * 1 2 3 30 30 H 1.08991 * 109.47160 * 330.00123 * 1 2 3 31 31 H 1.08002 * 120.32647 * 359.97438 * 3 2 1 32 32 H 1.08997 * 109.47330 * 89.99451 * 5 4 3 33 33 H 1.09000 * 109.47380 * 210.00169 * 5 4 3 34 34 H 1.09002 * 109.46728 * 329.99758 * 5 4 3 35 35 H 0.97001 * 120.00329 * 359.97438 * 9 7 6 36 36 H 1.09010 * 110.03291 * 238.57388 * 12 10 9 37 37 H 1.08992 * 110.03438 * 0.02562 * 12 10 9 38 38 H 1.08999 * 110.48977 * 142.28952 * 13 12 10 39 39 H 1.09007 * 110.48585 * 264.93046 * 13 12 10 40 40 H 0.97004 * 119.99848 * 180.02562 * 19 18 16 41 41 H 1.08999 * 110.48694 * 335.78466 * 24 10 9 42 42 H 1.09003 * 110.48485 * 98.42698 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1872 1.2048 0.0000 4 6 3.5707 1.2022 -0.0058 5 6 4.3458 2.4945 -0.0123 6 6 4.2323 -0.0318 -0.0009 7 6 5.7085 -0.0929 -0.0015 8 8 6.3155 -0.1180 -1.0544 9 7 6.3823 -0.1210 1.1655 10 6 7.8460 -0.1811 1.1651 11 1 8.1945 -0.7821 0.3251 12 6 8.4318 1.2391 1.0760 13 6 9.2720 1.4501 2.3524 14 6 9.6398 0.0156 2.8065 15 1 10.4841 -0.3667 2.2326 16 6 9.9419 -0.0164 4.2826 17 1 9.3381 -0.6196 4.9443 18 6 10.9889 0.7246 4.7883 19 7 11.7243 1.4589 3.9823 20 14 11.3629 0.6854 6.6180 21 1 11.6767 -0.7065 7.0295 22 1 12.5282 1.5603 6.9039 23 1 10.1812 1.1709 7.3752 24 6 8.3507 -0.7834 2.4925 25 6 3.4726 -1.2044 -0.0009 26 17 4.2694 -2.7466 -0.0008 27 7 2.1556 -1.1488 -0.0004 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 1.6435 2.1379 -0.0004 32 1 4.5370 2.8087 1.0138 33 1 5.2937 2.3471 -0.5298 34 1 3.7673 3.2626 -0.5256 35 1 5.8980 -0.1007 2.0057 36 1 9.0653 1.3270 0.1932 37 1 7.6271 1.9729 1.0335 38 1 10.1723 2.0214 2.1265 39 1 8.6821 1.9532 3.1186 40 1 12.4612 1.9799 4.3380 41 1 7.6120 -0.6410 3.2813 42 1 8.5787 -1.8421 2.3688 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296916410.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:43:31 Heat of formation + Delta-G solvation = -50.093539 kcal Electronic energy + Delta-G solvation = -24676.587579 eV Core-core repulsion = 21066.489747 eV Total energy + Delta-G solvation = -3610.097831 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.119 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.97085 -40.55365 -38.67179 -37.90852 -35.45712 -35.25328 -33.91281 -33.44868 -30.14937 -29.74832 -28.76247 -28.22202 -25.87464 -24.74715 -23.06388 -21.84325 -21.30022 -20.82472 -18.86143 -18.50818 -18.39702 -17.29755 -17.21266 -16.61116 -16.30197 -15.88416 -15.80016 -15.22962 -14.94552 -14.45506 -14.27017 -14.08778 -14.01787 -13.87594 -13.82001 -13.65315 -13.20541 -13.03292 -12.84689 -12.78305 -12.61477 -12.47088 -12.45729 -12.42379 -12.16511 -11.68597 -11.40850 -11.34342 -11.08937 -10.81239 -10.75616 -10.64422 -10.44611 -10.10915 -9.99181 -8.08900 -6.19096 -0.43983 -0.09488 0.56196 1.36263 1.44236 1.45107 1.52436 2.01094 2.34348 2.45825 3.16925 3.21875 3.42648 3.50531 3.71480 3.91493 3.95502 4.02573 4.18099 4.19952 4.45081 4.47306 4.62787 4.68608 4.73931 4.80593 4.89767 4.90572 4.96441 4.99003 5.04533 5.07121 5.15342 5.17292 5.24686 5.40544 5.45736 5.61399 5.67705 5.94701 6.00974 6.37957 6.41115 6.53006 6.90801 7.05118 7.48488 8.99224 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.019027 B = 0.002996 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.236124 B = 9342.247899 C = 9547.913192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.155 3.845 3 C -0.158 4.158 4 C 0.006 3.994 5 C -0.125 4.125 6 C -0.189 4.189 7 C 0.574 3.426 8 O -0.565 6.565 9 N -0.694 5.694 10 C 0.151 3.849 11 H 0.072 0.928 12 C -0.122 4.122 13 C -0.088 4.088 14 C 0.041 3.959 15 H 0.000 1.000 16 C -0.530 4.530 17 H 0.057 0.943 18 C 0.013 3.987 19 N -0.919 5.919 20 Si 0.952 3.048 21 H -0.274 1.274 22 H -0.288 1.288 23 H -0.268 1.268 24 C -0.107 4.107 25 C 0.198 3.802 26 Cl -0.030 7.030 27 N -0.503 5.503 28 H 0.097 0.903 29 H 0.077 0.923 30 H 0.112 0.888 31 H 0.192 0.808 32 H 0.100 0.900 33 H 0.054 0.946 34 H 0.112 0.888 35 H 0.410 0.590 36 H 0.053 0.947 37 H 0.068 0.932 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.259 0.741 41 H 0.073 0.927 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.354 1.986 -6.990 25.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.018 3.982 3 C -0.177 4.177 4 C -0.002 4.002 5 C -0.181 4.181 6 C -0.196 4.196 7 C 0.359 3.641 8 O -0.444 6.444 9 N -0.344 5.344 10 C 0.047 3.953 11 H 0.090 0.910 12 C -0.160 4.160 13 C -0.126 4.126 14 C 0.022 3.978 15 H 0.018 0.982 16 C -0.568 4.568 17 H 0.075 0.925 18 C -0.186 4.186 19 N -0.558 5.558 20 Si 0.778 3.222 21 H -0.199 1.199 22 H -0.214 1.214 23 H -0.193 1.193 24 C -0.145 4.145 25 C 0.033 3.967 26 Cl -0.002 7.002 27 N -0.216 5.216 28 H 0.116 0.884 29 H 0.096 0.904 30 H 0.130 0.870 31 H 0.209 0.791 32 H 0.118 0.882 33 H 0.073 0.927 34 H 0.131 0.869 35 H 0.246 0.754 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.092 0.908 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -24.153 1.166 -7.728 25.386 hybrid contribution 1.391 0.233 1.146 1.818 sum -22.762 1.399 -6.582 23.736 Atomic orbital electron populations 1.20949 0.84853 1.05387 1.04838 1.22110 0.98991 0.86556 0.90521 1.22323 0.92633 1.01153 1.01589 1.20671 0.94935 0.93664 0.90930 1.21036 0.99641 0.92734 1.04722 1.20511 0.93842 0.94320 1.10891 1.18060 0.86529 0.75478 0.84037 1.90787 1.70024 1.51116 1.32429 1.46152 1.07267 1.72752 1.08252 1.21582 0.78180 0.96752 0.98834 0.90992 1.22513 0.99111 0.96015 0.98404 1.22065 0.97131 0.99204 0.94243 1.19522 0.91587 0.92023 0.94641 0.98194 1.21436 1.14348 1.27194 0.93825 0.92476 1.25742 0.95992 0.95166 1.01701 1.70086 1.19608 1.29824 1.36249 0.85711 0.77661 0.77950 0.80912 1.19884 1.21371 1.19345 1.22562 0.98586 0.98877 0.94498 1.21615 0.89999 0.86694 0.98355 1.98432 1.77138 1.28353 1.96247 1.66920 1.07023 1.31842 1.15841 0.88434 0.90421 0.86994 0.79074 0.88211 0.92716 0.86926 0.75360 0.92826 0.91342 0.94156 0.94135 0.93176 0.90844 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.80 10.16 71.24 0.72 -0.08 16 2 C 0.16 2.50 6.78 42.57 0.29 2.79 16 3 C -0.16 -2.09 9.42 22.32 0.21 -1.88 16 4 C 0.01 0.12 5.95 -19.41 -0.12 0.00 16 5 C -0.13 -1.98 9.68 71.23 0.69 -1.29 16 6 C -0.19 -4.94 5.65 -19.97 -0.11 -5.05 16 7 C 0.57 17.92 4.94 86.76 0.43 18.35 16 8 O -0.56 -21.89 16.78 -3.90 -0.07 -21.96 16 9 N -0.69 -20.66 4.99 -442.06 -2.21 -22.86 16 10 C 0.15 5.35 3.23 45.71 0.15 5.49 16 11 H 0.07 2.75 7.61 -2.39 -0.02 2.73 16 12 C -0.12 -4.56 6.59 31.32 0.21 -4.36 16 13 C -0.09 -4.01 5.57 31.67 0.18 -3.83 16 14 C 0.04 2.00 2.82 -10.25 -0.03 1.97 16 15 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16 16 C -0.53 -28.26 8.54 25.60 0.22 -28.04 16 17 H 0.06 2.95 7.78 -2.91 -0.02 2.92 16 18 C 0.01 0.70 5.33 84.66 0.45 1.15 16 19 N -0.92 -52.73 12.02 21.45 0.26 -52.47 16 20 Si 0.95 42.77 29.54 68.60 2.03 44.79 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 23 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 24 C -0.11 -4.14 5.94 31.66 0.19 -3.95 16 25 C 0.20 5.31 7.31 85.05 0.62 5.94 16 26 Cl -0.03 -0.85 28.20 -2.72 -0.08 -0.93 16 27 N -0.50 -11.91 10.24 -173.77 -1.78 -13.69 16 28 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.11 0.22 8.07 -2.39 -0.02 0.20 16 31 H 0.19 0.82 8.06 -2.91 -0.02 0.79 16 32 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.05 1.19 7.20 -2.39 -0.02 1.17 16 34 H 0.11 1.06 8.10 -2.39 -0.02 1.05 16 35 H 0.41 10.46 8.33 -92.71 -0.77 9.69 16 36 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 37 H 0.07 2.30 7.92 -2.39 -0.02 2.28 16 38 H 0.04 2.05 7.37 -2.39 -0.02 2.03 16 39 H 0.04 1.86 8.04 -2.38 -0.02 1.84 16 40 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 41 H 0.07 2.66 7.63 -2.39 -0.02 2.64 16 42 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -69.10 364.27 2.52 -66.58 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 0.27 Total: 13.31 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: 4.09 Total: -12.78 kcal Atomic # 7 Polarization: -85.29 SS G_CDS: -3.73 Total: -89.02 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.07 Total: -21.96 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.79 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -0.08 Total: -0.93 kcal Total: -69.10 2.52 -66.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296916410.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.489 kcal (2) G-P(sol) polarization free energy of solvation -69.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds