Wall clock time and date at job start Sat Apr 11 2020 00:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38292 * 119.95637 * 2 1 4 4 C 1.38261 * 120.14864 * 179.97438 * 3 2 1 5 5 C 1.38232 * 120.05488 * 359.72292 * 4 3 2 6 6 Cl 1.73603 * 120.04451 * 180.27666 * 5 4 3 7 7 C 1.38945 * 119.90969 * 0.57322 * 5 4 3 8 8 N 1.40003 * 120.07308 * 179.69829 * 7 5 4 9 9 C 1.34779 * 119.99848 * 145.05880 * 8 7 5 10 10 O 1.21595 * 119.99976 * 4.63411 * 9 8 7 11 11 N 1.34771 * 120.00115 * 184.63957 * 9 8 7 12 12 C 1.46925 * 120.63023 * 5.00083 * 11 9 8 13 13 C 1.52764 * 109.00888 * 233.58313 * 12 11 9 14 14 C 1.53036 * 109.38248 * 305.58656 * 13 12 11 15 15 C 1.50701 * 109.44919 * 181.25178 * 14 13 12 16 16 H 1.08002 * 119.99817 * 239.93637 * 15 14 13 17 17 C 1.37871 * 119.99997 * 59.93653 * 15 14 13 18 18 N 1.31509 * 120.00145 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99916 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47104 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46881 * 120.00175 * 19 17 15 22 22 H 1.48495 * 109.46916 * 240.00041 * 19 17 15 23 23 C 1.53041 * 109.53767 * 61.24005 * 14 13 12 24 24 C 1.46927 * 120.63354 * 185.27573 * 11 9 8 25 25 C 1.38120 * 119.95456 * 180.02562 * 2 1 3 26 26 H 1.08995 * 109.47004 * 269.97897 * 1 2 3 27 27 H 1.08993 * 109.46771 * 29.98031 * 1 2 3 28 28 H 1.08996 * 109.46747 * 149.97472 * 1 2 3 29 29 H 1.07995 * 119.92314 * 0.02585 * 3 2 1 30 30 H 1.07999 * 119.97026 * 180.02562 * 4 3 2 31 31 H 0.96998 * 120.00143 * 324.77646 * 8 7 5 32 32 H 1.09000 * 109.58803 * 353.41231 * 12 11 9 33 33 H 1.08997 * 109.59445 * 113.84138 * 12 11 9 34 34 H 1.08992 * 109.56754 * 185.54697 * 13 12 11 35 35 H 1.09000 * 109.38574 * 65.51291 * 13 12 11 36 36 H 1.08995 * 109.46348 * 301.21535 * 14 13 12 37 37 H 0.97003 * 120.00137 * 179.97438 * 18 17 15 38 38 H 1.09004 * 109.50210 * 178.68373 * 23 14 13 39 39 H 1.08993 * 109.53048 * 58.60309 * 23 14 13 40 40 H 1.08993 * 109.58688 * 246.15785 * 24 11 9 41 41 H 1.08996 * 109.58388 * 6.43929 * 24 11 9 42 42 H 1.08006 * 120.02921 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1976 1.1982 0.0000 4 6 3.5802 1.2028 0.0005 5 6 4.2765 0.0087 0.0069 6 17 6.0125 0.0149 0.0148 7 6 3.5851 -1.1965 0.0006 8 7 4.2870 -2.4079 0.0006 9 6 3.7939 -3.4724 0.6642 10 8 2.7003 -3.4067 1.1918 11 7 4.5128 -4.6096 0.7430 12 6 5.8792 -4.6701 0.2061 13 6 5.9817 -5.8472 -0.7622 14 6 5.5260 -7.1264 -0.0565 15 6 5.6556 -8.2938 -1.0008 16 1 4.7836 -8.8731 -1.2661 17 6 6.8874 -8.6221 -1.5261 18 7 7.9493 -7.9169 -1.2027 19 14 7.0481 -10.0695 -2.6961 20 1 5.7159 -10.6940 -2.8969 21 1 7.5736 -9.5948 -4.0014 22 1 7.9825 -11.0698 -2.1204 23 6 4.0652 -6.9800 0.3756 24 6 3.9431 -5.8142 1.3619 25 6 2.1967 -1.1967 -0.0005 26 1 -0.3633 -0.0004 1.0276 27 1 -0.3632 0.8901 -0.5135 28 1 -0.3633 -0.8897 -0.5142 29 1 1.6557 2.1323 0.0004 30 1 4.1166 2.1402 0.0010 31 1 5.1260 -2.4823 -0.4803 32 1 6.1057 -3.7438 -0.3218 33 1 6.5870 -4.8099 1.0231 34 1 7.0148 -5.9610 -1.0904 35 1 5.3438 -5.6614 -1.6263 36 1 6.1489 -7.2986 0.8212 37 1 8.8159 -8.1481 -1.5720 38 1 3.7343 -7.9002 0.8573 39 1 3.4446 -6.7836 -0.4985 40 1 4.4898 -6.0492 2.2751 41 1 2.8933 -5.6416 1.5987 42 1 1.6564 -2.1319 -0.0014 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334331957.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:43:35 Heat of formation + Delta-G solvation = -14.307676 kcal Electronic energy + Delta-G solvation = -24880.673973 eV Core-core repulsion = 21272.127933 eV Total energy + Delta-G solvation = -3608.546040 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.119 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.75657 -39.15474 -37.06142 -36.62803 -34.92585 -33.60119 -32.39462 -31.40070 -30.19833 -29.44324 -26.98234 -26.20331 -23.70585 -22.72491 -22.36326 -21.48935 -20.24215 -19.05237 -18.03419 -17.12449 -16.56223 -16.33444 -15.76133 -15.35095 -14.69944 -14.51587 -14.14771 -14.09704 -13.77666 -13.61802 -13.27351 -13.08754 -12.83425 -12.70228 -12.61837 -12.46261 -11.98201 -11.65216 -11.62332 -11.36183 -11.32185 -11.03705 -10.99519 -10.65951 -10.44872 -10.34886 -10.20601 -9.82641 -9.61500 -9.22850 -9.00598 -8.74041 -8.44076 -8.30691 -7.93720 -6.07684 -4.13783 1.00259 1.20639 2.01745 2.74849 3.22284 3.24601 3.33371 3.37233 3.62440 3.98278 4.37505 4.63451 4.71959 5.02637 5.05157 5.21226 5.27754 5.43924 5.46277 5.48044 5.63097 5.77396 5.84404 5.86504 5.99147 6.01283 6.08661 6.09400 6.19324 6.33044 6.37839 6.50407 6.59461 6.73521 6.87231 6.90550 7.04639 7.10881 7.29650 7.61713 7.85967 7.97364 8.05390 8.35071 8.67767 8.89935 9.51811 10.97882 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.018986 B = 0.003141 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.413617 B = 8912.786452 C = 9709.270597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.064 4.064 3 C -0.134 4.134 4 C -0.089 4.089 5 C -0.077 4.077 6 Cl -0.069 7.069 7 C 0.191 3.809 8 N -0.687 5.687 9 C 0.707 3.293 10 O -0.586 6.586 11 N -0.610 5.610 12 C 0.107 3.893 13 C -0.125 4.125 14 C 0.049 3.951 15 C -0.511 4.511 16 H 0.056 0.944 17 C 0.061 3.939 18 N -0.891 5.891 19 Si 0.890 3.110 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.284 1.284 23 C -0.125 4.125 24 C 0.129 3.871 25 C -0.112 4.112 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.129 0.871 30 H 0.134 0.866 31 H 0.410 0.590 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.106 0.894 35 H 0.039 0.961 36 H 0.029 0.971 37 H 0.260 0.740 38 H 0.062 0.938 39 H 0.052 0.948 40 H 0.061 0.939 41 H 0.081 0.919 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.091 17.734 2.171 19.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.065 4.065 3 C -0.153 4.153 4 C -0.108 4.108 5 C -0.107 4.107 6 Cl -0.040 7.040 7 C 0.093 3.907 8 N -0.337 5.337 9 C 0.409 3.591 10 O -0.465 6.465 11 N -0.345 5.345 12 C -0.015 4.015 13 C -0.164 4.164 14 C 0.031 3.969 15 C -0.549 4.549 16 H 0.074 0.926 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.163 4.163 24 C 0.007 3.993 25 C -0.133 4.133 26 H 0.092 0.908 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.147 0.853 30 H 0.152 0.848 31 H 0.250 0.750 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.124 0.876 35 H 0.058 0.942 36 H 0.047 0.953 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.099 0.901 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -8.464 17.647 2.551 19.737 hybrid contribution 1.059 -0.806 -0.964 1.643 sum -7.405 16.841 1.587 18.466 Atomic orbital electron populations 1.20791 0.90621 1.02900 1.02664 1.19924 0.96529 0.92447 0.97616 1.20908 0.93129 0.97883 1.03398 1.20794 0.94140 0.96061 0.99788 1.20760 0.84511 0.93918 1.11513 1.98364 1.09723 1.98780 1.97170 1.17271 0.91146 0.83502 0.98741 1.42920 1.27139 1.09297 1.54386 1.15777 0.83966 0.80143 0.79206 1.90850 1.20598 1.82496 1.52593 1.47476 1.15771 1.10026 1.61240 1.21896 0.81468 0.99885 0.98233 1.21973 1.04976 0.93244 0.96174 1.18624 0.89593 0.92851 0.95867 1.21236 0.93807 1.12892 1.27002 0.92603 1.24961 0.95914 0.96578 0.96535 1.69835 0.99135 1.39501 1.44595 0.86559 0.78111 0.82673 0.80802 1.19816 1.21068 1.21036 1.22041 1.01058 0.95484 0.97705 1.21655 0.98793 0.83258 0.95631 1.21290 0.91655 0.99561 1.00769 0.90811 0.91417 0.91196 0.85297 0.84810 0.74968 0.92651 0.91462 0.87599 0.94204 0.95339 0.93004 0.91893 0.92912 0.92073 0.90109 0.83036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.01 36.01 0.36 -0.60 16 2 C -0.06 -0.72 5.88 -104.64 -0.62 -1.33 16 3 C -0.13 -1.30 9.69 -39.55 -0.38 -1.69 16 4 C -0.09 -0.92 9.82 -39.58 -0.39 -1.31 16 5 C -0.08 -0.97 6.34 -39.32 -0.25 -1.22 16 6 Cl -0.07 -0.82 27.97 -51.86 -1.45 -2.27 16 7 C 0.19 2.75 6.31 -83.64 -0.53 2.22 16 8 N -0.69 -10.52 4.94 -14.20 -0.07 -10.59 16 9 C 0.71 12.56 8.15 -86.92 -0.71 11.85 16 10 O -0.59 -11.52 13.19 5.28 0.07 -11.45 16 11 N -0.61 -10.86 2.98 -178.76 -0.53 -11.39 16 12 C 0.11 1.89 6.40 -3.93 -0.03 1.86 16 13 C -0.13 -2.67 5.14 -26.83 -0.14 -2.81 16 14 C 0.05 1.13 2.07 -91.73 -0.19 0.95 16 15 C -0.51 -13.33 8.56 -34.44 -0.29 -13.63 16 16 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 17 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 18 N -0.89 -24.02 11.31 55.43 0.63 -23.39 16 19 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 C -0.12 -2.47 5.30 -26.61 -0.14 -2.61 16 24 C 0.13 2.30 6.42 -3.71 -0.02 2.27 16 25 C -0.11 -1.57 8.35 -39.40 -0.33 -1.90 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 28 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 29 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 30 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.41 5.81 5.58 -40.82 -0.23 5.58 16 32 H 0.06 0.84 5.58 -51.93 -0.29 0.55 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.11 2.53 6.03 -51.93 -0.31 2.22 16 35 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.08 1.42 7.03 -51.93 -0.37 1.05 16 42 H 0.15 2.37 6.19 -52.48 -0.32 2.04 16 LS Contribution 350.72 15.07 5.29 5.29 Total: -1.00 -28.42 350.72 -10.55 -38.96 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -5.71 Total: 5.71 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -3.75 Total: -6.42 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: 0.02 Total: -45.37 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.07 Total: -11.45 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.45 Total: -2.27 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.42 -10.55 -38.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334331957.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.655 kcal (2) G-P(sol) polarization free energy of solvation -28.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds