Wall clock time and date at job start Sat Apr 11 2020 00:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38292 * 119.95637 * 2 1 4 4 C 1.38261 * 120.14864 * 179.97438 * 3 2 1 5 5 C 1.38232 * 120.05488 * 359.72292 * 4 3 2 6 6 Cl 1.73603 * 120.04451 * 180.27666 * 5 4 3 7 7 C 1.38945 * 119.90969 * 0.57322 * 5 4 3 8 8 N 1.40003 * 120.07308 * 179.69829 * 7 5 4 9 9 C 1.34779 * 119.99848 * 145.05880 * 8 7 5 10 10 O 1.21595 * 119.99976 * 4.63411 * 9 8 7 11 11 N 1.34771 * 120.00115 * 184.63957 * 9 8 7 12 12 C 1.46925 * 120.63023 * 5.00083 * 11 9 8 13 13 C 1.52764 * 109.00888 * 233.58313 * 12 11 9 14 14 C 1.53036 * 109.38248 * 305.58656 * 13 12 11 15 15 C 1.50701 * 109.44919 * 181.25178 * 14 13 12 16 16 H 1.08002 * 119.99817 * 239.93637 * 15 14 13 17 17 C 1.37871 * 119.99997 * 59.93653 * 15 14 13 18 18 N 1.31509 * 120.00145 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99916 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47104 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46881 * 120.00175 * 19 17 15 22 22 H 1.48495 * 109.46916 * 240.00041 * 19 17 15 23 23 C 1.53041 * 109.53767 * 61.24005 * 14 13 12 24 24 C 1.46927 * 120.63354 * 185.27573 * 11 9 8 25 25 C 1.38120 * 119.95456 * 180.02562 * 2 1 3 26 26 H 1.08995 * 109.47004 * 269.97897 * 1 2 3 27 27 H 1.08993 * 109.46771 * 29.98031 * 1 2 3 28 28 H 1.08996 * 109.46747 * 149.97472 * 1 2 3 29 29 H 1.07995 * 119.92314 * 0.02585 * 3 2 1 30 30 H 1.07999 * 119.97026 * 180.02562 * 4 3 2 31 31 H 0.96998 * 120.00143 * 324.77646 * 8 7 5 32 32 H 1.09000 * 109.58803 * 353.41231 * 12 11 9 33 33 H 1.08997 * 109.59445 * 113.84138 * 12 11 9 34 34 H 1.08992 * 109.56754 * 185.54697 * 13 12 11 35 35 H 1.09000 * 109.38574 * 65.51291 * 13 12 11 36 36 H 1.08995 * 109.46348 * 301.21535 * 14 13 12 37 37 H 0.97003 * 120.00137 * 179.97438 * 18 17 15 38 38 H 1.09004 * 109.50210 * 178.68373 * 23 14 13 39 39 H 1.08993 * 109.53048 * 58.60309 * 23 14 13 40 40 H 1.08993 * 109.58688 * 246.15785 * 24 11 9 41 41 H 1.08996 * 109.58388 * 6.43929 * 24 11 9 42 42 H 1.08006 * 120.02921 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1976 1.1982 0.0000 4 6 3.5802 1.2028 0.0005 5 6 4.2765 0.0087 0.0069 6 17 6.0125 0.0149 0.0148 7 6 3.5851 -1.1965 0.0006 8 7 4.2870 -2.4079 0.0006 9 6 3.7939 -3.4724 0.6642 10 8 2.7003 -3.4067 1.1918 11 7 4.5128 -4.6096 0.7430 12 6 5.8792 -4.6701 0.2061 13 6 5.9817 -5.8472 -0.7622 14 6 5.5260 -7.1264 -0.0565 15 6 5.6556 -8.2938 -1.0008 16 1 4.7836 -8.8731 -1.2661 17 6 6.8874 -8.6221 -1.5261 18 7 7.9493 -7.9169 -1.2027 19 14 7.0481 -10.0695 -2.6961 20 1 5.7159 -10.6940 -2.8969 21 1 7.5736 -9.5948 -4.0014 22 1 7.9825 -11.0698 -2.1204 23 6 4.0652 -6.9800 0.3756 24 6 3.9431 -5.8142 1.3619 25 6 2.1967 -1.1967 -0.0005 26 1 -0.3633 -0.0004 1.0276 27 1 -0.3632 0.8901 -0.5135 28 1 -0.3633 -0.8897 -0.5142 29 1 1.6557 2.1323 0.0004 30 1 4.1166 2.1402 0.0010 31 1 5.1260 -2.4823 -0.4803 32 1 6.1057 -3.7438 -0.3218 33 1 6.5870 -4.8099 1.0231 34 1 7.0148 -5.9610 -1.0904 35 1 5.3438 -5.6614 -1.6263 36 1 6.1489 -7.2986 0.8212 37 1 8.8159 -8.1481 -1.5720 38 1 3.7343 -7.9002 0.8573 39 1 3.4446 -6.7836 -0.4985 40 1 4.4898 -6.0492 2.2751 41 1 2.8933 -5.6416 1.5987 42 1 1.6564 -2.1319 -0.0014 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334331957.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:43:34 Heat of formation + Delta-G solvation = -27.734988 kcal Electronic energy + Delta-G solvation = -24881.256225 eV Core-core repulsion = 21272.127933 eV Total energy + Delta-G solvation = -3609.128292 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.119 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.00821 -40.25785 -38.56574 -37.54551 -36.13697 -35.37592 -33.32805 -32.99741 -31.78902 -30.56648 -28.03370 -27.70974 -25.16388 -24.18435 -23.69155 -22.53637 -21.65934 -20.51559 -19.40671 -18.41119 -18.14831 -17.55881 -16.91813 -16.70958 -16.42151 -15.86425 -15.35983 -15.07573 -14.92189 -14.85397 -14.64041 -14.49241 -14.28882 -14.12752 -13.77093 -13.43959 -13.27106 -13.16115 -12.84916 -12.69646 -12.48931 -12.44401 -12.21338 -12.17185 -12.04271 -11.93696 -11.50300 -11.44550 -11.12879 -11.02090 -10.81364 -10.41522 -9.75342 -9.59873 -9.09228 -8.08694 -6.21478 0.08968 0.28794 1.07952 1.39773 1.43523 1.49087 1.53188 1.92907 2.43714 2.64223 2.68540 3.18242 3.77146 3.91670 3.97321 4.13650 4.22580 4.28254 4.31185 4.39910 4.41069 4.55431 4.63621 4.73713 4.83561 4.84843 4.86144 4.94857 5.04024 5.17016 5.18643 5.21461 5.21761 5.39369 5.40308 5.43722 5.61312 5.64450 5.84864 5.92325 5.98003 6.10816 6.38372 6.69651 6.88179 7.31497 7.46461 8.94882 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.018986 B = 0.003141 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.413617 B = 8912.786452 C = 9709.270597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.067 4.067 3 C -0.121 4.121 4 C -0.085 4.085 5 C -0.085 4.085 6 Cl -0.068 7.068 7 C 0.161 3.839 8 N -0.681 5.681 9 C 0.706 3.294 10 O -0.607 6.607 11 N -0.614 5.614 12 C 0.119 3.881 13 C -0.114 4.114 14 C 0.046 3.954 15 C -0.532 4.532 16 H 0.048 0.952 17 C 0.018 3.982 18 N -0.911 5.911 19 Si 0.948 3.052 20 H -0.272 1.272 21 H -0.281 1.281 22 H -0.281 1.281 23 C -0.114 4.114 24 C 0.135 3.865 25 C -0.134 4.134 26 H 0.079 0.921 27 H 0.094 0.906 28 H 0.062 0.938 29 H 0.167 0.833 30 H 0.162 0.838 31 H 0.413 0.587 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.028 0.972 36 H 0.006 0.994 37 H 0.261 0.739 38 H 0.068 0.932 39 H 0.042 0.958 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.813 19.976 2.061 21.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.067 4.067 3 C -0.140 4.140 4 C -0.104 4.104 5 C -0.114 4.114 6 Cl -0.039 7.039 7 C 0.065 3.935 8 N -0.331 5.331 9 C 0.408 3.592 10 O -0.488 6.488 11 N -0.349 5.349 12 C -0.003 4.003 13 C -0.153 4.153 14 C 0.028 3.972 15 C -0.570 4.570 16 H 0.066 0.934 17 C -0.181 4.181 18 N -0.551 5.551 19 Si 0.774 3.226 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.207 1.207 23 C -0.152 4.152 24 C 0.013 3.987 25 C -0.154 4.154 26 H 0.098 0.902 27 H 0.112 0.888 28 H 0.081 0.919 29 H 0.184 0.816 30 H 0.179 0.821 31 H 0.254 0.746 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.047 0.953 36 H 0.024 0.976 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.061 0.939 40 H 0.090 0.910 41 H 0.104 0.896 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.188 19.915 2.433 22.067 hybrid contribution 1.235 -1.425 -0.937 2.106 sum -7.954 18.490 1.496 20.184 Atomic orbital electron populations 1.20855 0.88805 1.03920 1.03311 1.20257 0.97949 0.91994 0.96537 1.21342 0.92998 0.98690 1.00984 1.21202 0.94663 0.96258 0.98236 1.20909 0.84725 0.94016 1.11765 1.98363 1.09592 1.98773 1.97186 1.17502 0.91518 0.83552 1.00950 1.42771 1.27196 1.09247 1.53887 1.15856 0.83649 0.80467 0.79205 1.90834 1.21426 1.82950 1.53575 1.47449 1.15757 1.10233 1.61453 1.21719 0.81625 0.99377 0.97617 1.21722 1.02927 0.94167 0.96502 1.18594 0.91228 0.92871 0.94540 1.21565 0.93719 1.13984 1.27755 0.93384 1.25623 0.95764 0.98808 0.97935 1.69944 0.99366 1.40508 1.45294 0.85662 0.77956 0.79948 0.79000 1.19636 1.20727 1.20736 1.21880 0.98612 0.96830 0.97880 1.21558 0.99328 0.82546 0.95288 1.21231 0.91734 0.99863 1.02621 0.90233 0.88774 0.91854 0.81555 0.82068 0.74603 0.90129 0.91112 0.90046 0.95293 0.97612 0.92957 0.91328 0.93878 0.91010 0.89648 0.85518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.65 10.01 71.24 0.71 -0.94 16 2 C -0.07 -1.35 5.88 -19.88 -0.12 -1.47 16 3 C -0.12 -1.93 9.69 22.29 0.22 -1.71 16 4 C -0.08 -1.50 9.82 22.27 0.22 -1.28 16 5 C -0.08 -1.99 6.34 22.44 0.14 -1.85 16 6 Cl -0.07 -1.52 27.97 -2.72 -0.08 -1.60 16 7 C 0.16 4.55 6.31 38.15 0.24 4.79 16 8 N -0.68 -20.75 4.94 -317.08 -1.57 -22.31 16 9 C 0.71 25.15 8.15 179.06 1.46 26.60 16 10 O -0.61 -24.12 13.19 -4.01 -0.05 -24.17 16 11 N -0.61 -21.82 2.98 -837.75 -2.49 -24.31 16 12 C 0.12 4.17 6.40 86.22 0.55 4.72 16 13 C -0.11 -5.00 5.14 30.53 0.16 -4.84 16 14 C 0.05 2.18 2.07 -11.51 -0.02 2.16 16 15 C -0.53 -28.31 8.56 25.60 0.22 -28.09 16 16 H 0.05 2.56 7.74 -2.91 -0.02 2.54 16 17 C 0.02 0.94 5.30 84.65 0.45 1.39 16 18 N -0.91 -49.84 11.31 21.44 0.24 -49.60 16 19 Si 0.95 42.55 29.54 68.60 2.03 44.57 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 21 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 23 C -0.11 -4.56 5.30 30.67 0.16 -4.40 16 24 C 0.14 4.81 6.42 86.36 0.55 5.37 16 25 C -0.13 -3.71 8.35 22.39 0.19 -3.52 16 26 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.09 0.88 8.08 -2.39 -0.02 0.86 16 28 H 0.06 1.01 8.08 -2.39 -0.02 1.00 16 29 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 30 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 31 H 0.41 11.55 5.58 -92.71 -0.52 11.03 16 32 H 0.08 2.41 5.58 -2.39 -0.01 2.39 16 33 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.08 3.99 6.03 -2.39 -0.01 3.98 16 35 H 0.03 1.28 8.14 -2.39 -0.02 1.27 16 36 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 37 H 0.26 13.64 8.31 -92.71 -0.77 12.86 16 38 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 39 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.09 2.99 7.03 -2.39 -0.02 2.97 16 42 H 0.13 4.11 6.19 -2.91 -0.02 4.09 16 Total: -1.00 -62.11 350.72 3.73 -58.38 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: 0.53 Total: 22.11 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: 5.13 Total: -3.07 kcal Atomic # 7 Polarization: -92.41 SS G_CDS: -3.82 Total: -96.23 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -0.05 Total: -24.17 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -0.08 Total: -1.60 kcal Total: -62.11 3.73 -58.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334331957.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.643 kcal (2) G-P(sol) polarization free energy of solvation -62.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds