Wall clock time and date at job start Sat Apr 11 2020 00:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34774 * 119.99712 * 2 1 4 4 O 1.21593 * 119.99634 * 179.97438 * 3 2 1 5 5 N 1.34768 * 120.00413 * 0.02562 * 3 2 1 6 6 C 1.39274 * 120.00336 * 175.14181 * 5 3 2 7 7 C 1.39467 * 119.83786 * 326.45343 * 6 5 3 8 8 C 1.36381 * 120.17639 * 180.27178 * 7 6 5 9 9 C 1.40886 * 119.85177 * 359.97438 * 8 7 6 10 10 C 1.41150 * 120.15870 * 180.02562 * 9 8 7 11 11 H 1.08006 * 119.99814 * 33.88348 * 10 9 8 12 12 C 1.39889 * 120.00355 * 213.87759 * 10 9 8 13 13 N 1.30880 * 119.99753 * 5.85497 * 12 10 9 14 14 Si 1.86796 * 119.99890 * 185.86035 * 12 10 9 15 15 H 1.48499 * 109.47750 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47577 * 120.00055 * 14 12 10 17 17 H 1.48510 * 109.46814 * 239.99662 * 14 12 10 18 18 C 1.40843 * 119.68370 * 0.02562 * 9 8 7 19 19 C 1.36479 * 119.81687 * 359.97438 * 18 9 8 20 20 Cl 1.73604 * 119.92455 * 180.02562 * 19 18 9 21 21 C 1.46501 * 120.00182 * 180.02562 * 2 1 3 22 22 H 1.09004 * 115.55237 * 148.14057 * 21 2 1 23 23 C 1.53003 * 117.49705 * 2.44111 * 21 2 1 24 24 C 1.52995 * 117.49990 * 293.81966 * 21 2 1 25 25 C 1.52999 * 117.49859 * 214.97969 * 24 21 2 26 26 C 1.52999 * 117.49815 * 359.97244 * 24 21 2 27 27 H 1.08997 * 109.47441 * 92.63692 * 1 2 3 28 28 H 1.09001 * 109.46963 * 212.63801 * 1 2 3 29 29 H 1.08995 * 109.47133 * 332.63239 * 1 2 3 30 30 H 0.96995 * 120.00011 * 355.14047 * 5 3 2 31 31 H 1.07990 * 119.91112 * 0.25220 * 7 6 5 32 32 H 1.08001 * 120.07055 * 179.97438 * 8 7 6 33 33 H 0.97002 * 120.00030 * 180.02562 * 13 12 10 34 34 H 1.08001 * 120.08857 * 180.02562 * 18 9 8 35 35 H 1.08998 * 117.49841 * 359.97438 * 23 21 2 36 36 H 1.08997 * 117.49931 * 145.01953 * 23 21 2 37 37 H 1.09000 * 109.47720 * 59.99287 * 25 24 21 38 38 H 1.09000 * 109.47631 * 179.97438 * 25 24 21 39 39 H 1.09000 * 109.46945 * 299.99565 * 25 24 21 40 40 H 1.08999 * 109.47517 * 69.67059 * 26 24 21 41 41 H 1.09004 * 109.47265 * 189.67258 * 26 24 21 42 42 H 1.09000 * 109.47193 * 309.66308 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3547 1.1672 0.0005 5 7 1.4650 2.3343 0.0005 6 6 2.1576 3.5383 0.1027 7 6 3.3256 3.6047 0.8620 8 6 4.0063 4.7815 0.9712 9 6 3.5274 5.9322 0.3143 10 6 4.2271 7.1533 0.4226 11 1 5.3047 7.1536 0.4958 12 6 3.5249 8.3631 0.4349 13 7 2.2164 8.3600 0.4617 14 14 4.4548 9.9830 0.4128 15 1 5.9152 9.7152 0.3838 16 1 4.0694 10.7588 -0.7934 17 1 4.1191 10.7631 1.6311 18 6 2.3473 5.8583 -0.4508 19 6 1.6767 4.6739 -0.5512 20 17 0.2221 4.5794 -1.4942 21 6 2.1975 -1.2687 -0.0006 22 1 3.1560 -1.2580 -0.5196 23 6 1.3765 -2.5585 -0.0590 24 6 2.0761 -2.1551 1.2405 25 6 3.3093 -2.9589 1.6579 26 6 1.1995 -1.6484 2.3875 27 1 -0.3634 -0.0473 -1.0265 28 1 -0.3633 -0.8654 0.5543 29 1 -0.3633 0.9126 0.4724 30 1 0.4976 2.3359 -0.0703 31 1 3.6918 2.7221 1.3650 32 1 4.9103 4.8310 1.5600 33 1 1.7294 9.1989 0.4698 34 1 1.9746 6.7362 -0.9575 35 1 0.2913 -2.4630 -0.0965 36 1 1.7947 -3.3965 -0.6165 37 1 4.1327 -2.2771 1.8703 38 1 3.0793 -3.5397 2.5512 39 1 3.5945 -3.6324 0.8498 40 1 0.1530 -1.6736 2.0836 41 1 1.3397 -2.2855 3.2608 42 1 1.4813 -0.6251 2.6355 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334729284.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:43:59 Heat of formation + Delta-G solvation = 16.644139 kcal Electronic energy + Delta-G solvation = -24756.816052 eV Core-core repulsion = 21149.612183 eV Total energy + Delta-G solvation = -3607.203868 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.119 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.43365 -38.71980 -37.35485 -35.51897 -34.53207 -34.26176 -32.79149 -29.49162 -29.34557 -28.76980 -27.74858 -26.88059 -25.13815 -22.62204 -21.47010 -20.80676 -19.70338 -18.89302 -18.09263 -17.41295 -16.60730 -15.85380 -15.56320 -15.32099 -14.52702 -14.25618 -13.99218 -13.87134 -13.57877 -13.33200 -13.05476 -12.93606 -12.81891 -12.54081 -12.30573 -12.22522 -12.16019 -11.90091 -11.78724 -11.31009 -11.20509 -11.09630 -10.95210 -10.63407 -10.42445 -10.34039 -10.09154 -10.00158 -9.86263 -9.56877 -9.34227 -8.90228 -8.34650 -7.54954 -6.98703 -6.75503 -4.42170 2.44424 2.75587 2.85314 3.06317 3.07472 3.12666 3.17664 3.43015 3.78694 3.92428 4.26452 4.52676 4.57061 4.61870 4.69544 4.91248 4.96447 5.27164 5.41081 5.47084 5.48838 5.52907 5.61251 5.76905 5.78307 5.82222 5.85840 6.04614 6.15535 6.18504 6.40277 6.57105 6.70849 6.86756 7.00949 7.08521 7.20038 7.33119 7.65544 7.70675 7.90427 8.09869 8.32198 8.44337 8.75250 8.80934 9.00440 10.19311 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.022678 B = 0.003126 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.363661 B = 8956.140723 C = 9808.138733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.606 5.606 3 C 0.703 3.297 4 O -0.573 6.573 5 N -0.664 5.664 6 C 0.033 3.967 7 C -0.073 4.073 8 C -0.200 4.200 9 C 0.112 3.888 10 C -0.458 4.458 11 H 0.082 0.918 12 C 0.071 3.929 13 N -0.803 5.803 14 Si 0.914 3.086 15 H -0.261 1.261 16 H -0.273 1.273 17 H -0.274 1.274 18 C -0.133 4.133 19 C -0.022 4.022 20 Cl -0.121 7.121 21 C 0.116 3.884 22 H 0.129 0.871 23 C -0.181 4.181 24 C -0.144 4.144 25 C -0.112 4.112 26 C -0.111 4.111 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.395 0.605 31 H 0.114 0.886 32 H 0.103 0.897 33 H 0.281 0.719 34 H 0.134 0.866 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.058 0.942 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.729 -15.788 0.639 16.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.343 5.343 3 C 0.406 3.594 4 O -0.449 6.449 5 N -0.312 5.312 6 C -0.061 4.061 7 C -0.093 4.093 8 C -0.220 4.220 9 C 0.109 3.891 10 C -0.489 4.489 11 H 0.100 0.900 12 C -0.145 4.145 13 N -0.429 5.429 14 Si 0.739 3.261 15 H -0.184 1.184 16 H -0.198 1.198 17 H -0.200 1.200 18 C -0.153 4.153 19 C -0.050 4.050 20 Cl -0.093 7.093 21 C 0.010 3.990 22 H 0.147 0.853 23 C -0.219 4.219 24 C -0.146 4.146 25 C -0.170 4.170 26 C -0.168 4.168 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.231 0.769 31 H 0.132 0.868 32 H 0.121 0.879 33 H 0.092 0.908 34 H 0.151 0.849 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.182 -15.614 0.569 16.461 hybrid contribution -0.577 0.760 -0.137 0.964 sum -5.759 -14.855 0.432 15.938 Atomic orbital electron populations 1.21862 0.80408 1.03055 1.01880 1.46330 1.05555 1.03864 1.78520 1.15760 0.85349 0.79936 0.78376 1.90908 1.11282 1.85695 1.57024 1.42217 1.09341 1.03457 1.76202 1.16660 0.98889 0.83091 1.07468 1.20294 0.94124 0.97627 0.97254 1.20882 1.02627 0.93490 1.05029 1.17553 0.90876 0.92519 0.88153 1.19528 0.95031 0.89902 1.44400 0.90030 1.25901 0.94934 1.01299 0.92375 1.69780 1.07291 1.29243 1.36617 0.86158 0.80709 0.80736 0.78509 1.18446 1.19806 1.19967 1.20926 0.97851 0.94785 1.01761 1.20373 0.89875 0.95765 0.99004 1.98247 1.39340 1.98648 1.73078 1.21535 0.97130 0.79612 1.00713 0.85316 1.23714 0.99501 0.97968 1.00678 1.22091 0.99189 1.02744 0.90568 1.21337 0.95734 0.98813 1.01071 1.21323 0.97904 1.01326 0.96270 0.92567 0.90612 0.91246 0.76923 0.86767 0.87879 0.90844 0.84878 0.88340 0.88004 0.91810 0.92253 0.92471 0.92604 0.92341 0.92053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.72 9.11 59.85 0.55 1.27 16 2 N -0.61 -8.39 2.76 -179.68 -0.50 -8.88 16 3 C 0.70 12.97 8.01 -86.93 -0.70 12.27 16 4 O -0.57 -12.67 13.77 5.28 0.07 -12.59 16 5 N -0.66 -12.38 4.88 -14.07 -0.07 -12.45 16 6 C 0.03 0.74 6.29 -83.52 -0.53 0.22 16 7 C -0.07 -1.71 8.58 -39.79 -0.34 -2.05 16 8 C -0.20 -4.90 9.74 -39.25 -0.38 -5.28 16 9 C 0.11 2.92 5.51 -106.81 -0.59 2.33 16 10 C -0.46 -11.83 9.03 -37.86 -0.34 -12.17 16 11 H 0.08 2.03 7.85 -52.48 -0.41 1.62 16 12 C 0.07 1.75 5.30 -17.34 -0.09 1.66 16 13 N -0.80 -20.31 10.94 55.54 0.61 -19.70 16 14 Si 0.91 18.45 29.56 -169.99 -5.03 13.43 16 15 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 16 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 17 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 18 C -0.13 -3.36 8.33 -39.23 -0.33 -3.69 16 19 C -0.02 -0.50 6.30 -39.72 -0.25 -0.75 16 20 Cl -0.12 -2.36 27.89 -51.86 -1.45 -3.80 16 21 C 0.12 1.42 5.82 -67.93 -0.40 1.03 16 22 H 0.13 1.77 7.81 -51.93 -0.41 1.37 16 23 C -0.18 -1.60 9.09 -26.73 -0.24 -1.84 16 24 C -0.14 -1.47 2.70 -154.51 -0.42 -1.88 16 25 C -0.11 -1.03 9.84 37.16 0.37 -0.66 16 26 C -0.11 -1.10 8.73 37.16 0.32 -0.78 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.61 4.18 -51.93 -0.22 0.39 16 29 H 0.07 0.70 6.30 -51.93 -0.33 0.37 16 30 H 0.39 6.35 5.74 -40.82 -0.23 6.12 16 31 H 0.11 2.65 6.37 -52.49 -0.33 2.32 16 32 H 0.10 2.37 8.06 -52.49 -0.42 1.94 16 33 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 34 H 0.13 3.51 6.44 -52.49 -0.34 3.17 16 35 H 0.10 0.77 6.21 -51.93 -0.32 0.44 16 36 H 0.10 0.77 8.05 -51.93 -0.42 0.35 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.47 7.85 -51.93 -0.41 0.07 16 39 H 0.06 0.46 7.90 -51.93 -0.41 0.05 16 40 H 0.06 0.48 6.04 -51.93 -0.31 0.17 16 41 H 0.06 0.51 7.80 -51.93 -0.40 0.11 16 42 H 0.06 0.74 8.11 -51.93 -0.42 0.32 16 LS Contribution 352.80 15.07 5.32 5.32 Total: -1.00 -28.88 352.80 -9.77 -38.65 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -5.37 Total: 10.36 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -3.37 Total: -10.33 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 0.04 Total: -41.03 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.07 Total: -12.59 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.03 Total: 13.43 kcal Atomic # 17 Polarization: -2.36 SS G_CDS: -1.45 Total: -3.80 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.88 -9.77 -38.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334729284.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.294 kcal (2) G-P(sol) polarization free energy of solvation -28.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds