Wall clock time and date at job start Sat Apr 11 2020 00:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34774 * 119.99712 * 2 1 4 4 O 1.21593 * 119.99634 * 179.97438 * 3 2 1 5 5 N 1.34768 * 120.00413 * 0.02562 * 3 2 1 6 6 C 1.39274 * 120.00336 * 175.14181 * 5 3 2 7 7 C 1.39467 * 119.83786 * 326.45343 * 6 5 3 8 8 C 1.36381 * 120.17639 * 180.27178 * 7 6 5 9 9 C 1.40886 * 119.85177 * 359.97438 * 8 7 6 10 10 C 1.41150 * 120.15870 * 180.02562 * 9 8 7 11 11 H 1.08006 * 119.99814 * 33.88348 * 10 9 8 12 12 C 1.39889 * 120.00355 * 213.87759 * 10 9 8 13 13 N 1.30880 * 119.99753 * 5.85497 * 12 10 9 14 14 Si 1.86796 * 119.99890 * 185.86035 * 12 10 9 15 15 H 1.48499 * 109.47750 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47577 * 120.00055 * 14 12 10 17 17 H 1.48510 * 109.46814 * 239.99662 * 14 12 10 18 18 C 1.40843 * 119.68370 * 0.02562 * 9 8 7 19 19 C 1.36479 * 119.81687 * 359.97438 * 18 9 8 20 20 Cl 1.73604 * 119.92455 * 180.02562 * 19 18 9 21 21 C 1.46501 * 120.00182 * 180.02562 * 2 1 3 22 22 H 1.09004 * 115.55237 * 148.14057 * 21 2 1 23 23 C 1.53003 * 117.49705 * 2.44111 * 21 2 1 24 24 C 1.52995 * 117.49990 * 293.81966 * 21 2 1 25 25 C 1.52999 * 117.49859 * 214.97969 * 24 21 2 26 26 C 1.52999 * 117.49815 * 359.97244 * 24 21 2 27 27 H 1.08997 * 109.47441 * 92.63692 * 1 2 3 28 28 H 1.09001 * 109.46963 * 212.63801 * 1 2 3 29 29 H 1.08995 * 109.47133 * 332.63239 * 1 2 3 30 30 H 0.96995 * 120.00011 * 355.14047 * 5 3 2 31 31 H 1.07990 * 119.91112 * 0.25220 * 7 6 5 32 32 H 1.08001 * 120.07055 * 179.97438 * 8 7 6 33 33 H 0.97002 * 120.00030 * 180.02562 * 13 12 10 34 34 H 1.08001 * 120.08857 * 180.02562 * 18 9 8 35 35 H 1.08998 * 117.49841 * 359.97438 * 23 21 2 36 36 H 1.08997 * 117.49931 * 145.01953 * 23 21 2 37 37 H 1.09000 * 109.47720 * 59.99287 * 25 24 21 38 38 H 1.09000 * 109.47631 * 179.97438 * 25 24 21 39 39 H 1.09000 * 109.46945 * 299.99565 * 25 24 21 40 40 H 1.08999 * 109.47517 * 69.67059 * 26 24 21 41 41 H 1.09004 * 109.47265 * 189.67258 * 26 24 21 42 42 H 1.09000 * 109.47193 * 309.66308 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3547 1.1672 0.0005 5 7 1.4650 2.3343 0.0005 6 6 2.1576 3.5383 0.1027 7 6 3.3256 3.6047 0.8620 8 6 4.0063 4.7815 0.9712 9 6 3.5274 5.9322 0.3143 10 6 4.2271 7.1533 0.4226 11 1 5.3047 7.1536 0.4958 12 6 3.5249 8.3631 0.4349 13 7 2.2164 8.3600 0.4617 14 14 4.4548 9.9830 0.4128 15 1 5.9152 9.7152 0.3838 16 1 4.0694 10.7588 -0.7934 17 1 4.1191 10.7631 1.6311 18 6 2.3473 5.8583 -0.4508 19 6 1.6767 4.6739 -0.5512 20 17 0.2221 4.5794 -1.4942 21 6 2.1975 -1.2687 -0.0006 22 1 3.1560 -1.2580 -0.5196 23 6 1.3765 -2.5585 -0.0590 24 6 2.0761 -2.1551 1.2405 25 6 3.3093 -2.9589 1.6579 26 6 1.1995 -1.6484 2.3875 27 1 -0.3634 -0.0473 -1.0265 28 1 -0.3633 -0.8654 0.5543 29 1 -0.3633 0.9126 0.4724 30 1 0.4976 2.3359 -0.0703 31 1 3.6918 2.7221 1.3650 32 1 4.9103 4.8310 1.5600 33 1 1.7294 9.1989 0.4698 34 1 1.9746 6.7362 -0.9575 35 1 0.2913 -2.4630 -0.0965 36 1 1.7947 -3.3965 -0.6165 37 1 4.1327 -2.2771 1.8703 38 1 3.0793 -3.5397 2.5512 39 1 3.5945 -3.6324 0.8498 40 1 0.1530 -1.6736 2.0836 41 1 1.3397 -2.2855 3.2608 42 1 1.4813 -0.6251 2.6355 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334729284.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:43:58 Heat of formation + Delta-G solvation = 2.500081 kcal Electronic energy + Delta-G solvation = -24757.429384 eV Core-core repulsion = 21149.612183 eV Total energy + Delta-G solvation = -3607.817201 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.119 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.76575 -40.03018 -38.89375 -37.25200 -36.16255 -35.59170 -34.44257 -31.32904 -30.86020 -29.91465 -28.60262 -27.78427 -26.89294 -24.08608 -23.14214 -22.34459 -20.89115 -20.04446 -19.48813 -19.14841 -18.11071 -17.20908 -16.95465 -16.82164 -16.01949 -15.76552 -15.25725 -15.09063 -14.74714 -14.62608 -14.39384 -14.37934 -14.06697 -13.86675 -13.63666 -13.56172 -13.11599 -13.04052 -12.99643 -12.83490 -12.66501 -12.58490 -12.17250 -12.06318 -11.95255 -11.88393 -11.57365 -11.47768 -11.29811 -11.07010 -10.82655 -10.66818 -9.42910 -9.42130 -8.78489 -8.58689 -6.35662 0.64073 0.93361 1.35083 1.42267 1.45916 1.56653 1.57746 2.07555 2.24064 2.71160 2.83199 2.95961 3.55805 3.65655 3.84885 3.90560 4.08885 4.19616 4.28416 4.48304 4.60815 4.66987 4.71141 4.78360 4.87505 4.91789 4.94118 4.98838 5.04868 5.06585 5.07208 5.17936 5.27396 5.28613 5.42494 5.43271 5.48136 5.68635 5.85318 5.95021 6.04490 6.21176 6.51611 6.85259 6.90126 6.91108 7.54451 8.38001 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.022678 B = 0.003126 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.363661 B = 8956.140723 C = 9808.138733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.595 5.595 3 C 0.698 3.302 4 O -0.617 6.617 5 N -0.659 5.659 6 C 0.045 3.955 7 C -0.080 4.080 8 C -0.210 4.210 9 C 0.085 3.915 10 C -0.492 4.492 11 H 0.080 0.920 12 C 0.033 3.967 13 N -0.832 5.832 14 Si 0.986 3.014 15 H -0.259 1.259 16 H -0.265 1.265 17 H -0.267 1.267 18 C -0.148 4.148 19 C -0.028 4.028 20 Cl -0.087 7.087 21 C 0.076 3.924 22 H 0.104 0.896 23 C -0.144 4.144 24 C -0.145 4.145 25 C -0.113 4.113 26 C -0.110 4.110 27 H 0.073 0.927 28 H 0.103 0.897 29 H 0.070 0.930 30 H 0.408 0.592 31 H 0.114 0.886 32 H 0.108 0.892 33 H 0.288 0.712 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.042 0.958 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.480 -17.416 0.462 18.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.330 5.330 3 C 0.401 3.599 4 O -0.497 6.497 5 N -0.309 5.309 6 C -0.051 4.051 7 C -0.100 4.100 8 C -0.230 4.230 9 C 0.082 3.918 10 C -0.522 4.522 11 H 0.098 0.902 12 C -0.181 4.181 13 N -0.459 5.459 14 Si 0.808 3.192 15 H -0.183 1.183 16 H -0.190 1.190 17 H -0.192 1.192 18 C -0.168 4.168 19 C -0.057 4.057 20 Cl -0.059 7.059 21 C -0.029 4.029 22 H 0.122 0.878 23 C -0.182 4.182 24 C -0.147 4.147 25 C -0.170 4.170 26 C -0.167 4.167 27 H 0.091 0.909 28 H 0.121 0.879 29 H 0.088 0.912 30 H 0.247 0.753 31 H 0.132 0.868 32 H 0.127 0.873 33 H 0.099 0.901 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.061 0.939 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -6.996 -17.311 0.389 18.675 hybrid contribution -0.135 1.059 -0.102 1.072 sum -7.131 -16.252 0.287 17.750 Atomic orbital electron populations 1.22166 0.77809 1.04437 1.03501 1.46313 1.07083 1.02793 1.76780 1.15969 0.84982 0.80874 0.78119 1.90873 1.13386 1.86484 1.58933 1.42071 1.09838 1.02566 1.76404 1.16703 0.98286 0.84309 1.05768 1.20364 0.94753 0.97189 0.97718 1.21024 1.03085 0.93666 1.05271 1.17840 0.91766 0.93211 0.88991 1.19745 0.95165 0.90898 1.46367 0.90226 1.26712 0.95701 1.04302 0.91347 1.69834 1.08596 1.30533 1.36921 0.85081 0.79213 0.76136 0.78815 1.18284 1.19015 1.19169 1.20830 0.98437 0.95157 1.02423 1.20384 0.90988 0.95212 0.99137 1.98242 1.37020 1.98570 1.72060 1.21656 0.97639 0.80209 1.03378 0.87769 1.23823 1.00186 0.95555 0.98595 1.22203 0.99903 1.01862 0.90740 1.21358 0.94728 0.98610 1.02287 1.21328 0.98781 0.99825 0.96760 0.90884 0.87870 0.91172 0.75327 0.86847 0.87347 0.90123 0.86309 0.86363 0.86135 0.93921 0.90733 0.91192 0.90799 0.91066 0.94875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.08 9.11 127.77 1.16 2.25 16 2 N -0.60 -15.73 2.76 -840.63 -2.32 -18.05 16 3 C 0.70 25.79 8.01 179.06 1.43 27.23 16 4 O -0.62 -28.12 13.77 -4.01 -0.06 -28.17 16 5 N -0.66 -24.35 4.88 -316.70 -1.54 -25.89 16 6 C 0.04 2.03 6.29 38.58 0.24 2.27 16 7 C -0.08 -3.87 8.58 22.13 0.19 -3.68 16 8 C -0.21 -10.72 9.74 22.48 0.22 -10.51 16 9 C 0.08 4.59 5.51 -21.28 -0.12 4.48 16 10 C -0.49 -26.25 9.03 23.39 0.21 -26.04 16 11 H 0.08 4.11 7.85 -2.91 -0.02 4.09 16 12 C 0.03 1.65 5.30 85.23 0.45 2.10 16 13 N -0.83 -42.82 10.94 21.82 0.24 -42.59 16 14 Si 0.99 38.07 29.56 68.60 2.03 40.10 16 15 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 16 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 17 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 18 C -0.15 -7.71 8.33 22.50 0.19 -7.53 16 19 C -0.03 -1.32 6.30 22.18 0.14 -1.18 16 20 Cl -0.09 -3.31 27.89 -2.72 -0.08 -3.39 16 21 C 0.08 1.79 5.82 44.99 0.26 2.05 16 22 H 0.10 2.94 7.81 -2.39 -0.02 2.93 16 23 C -0.14 -2.03 9.09 30.59 0.28 -1.75 16 24 C -0.15 -2.66 2.70 -52.18 -0.14 -2.80 16 25 C -0.11 -1.90 9.84 71.98 0.71 -1.19 16 26 C -0.11 -1.93 8.73 71.98 0.63 -1.30 16 27 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.10 1.23 4.18 -2.39 -0.01 1.22 16 29 H 0.07 1.22 6.30 -2.39 -0.02 1.21 16 30 H 0.41 12.60 5.74 -92.71 -0.53 12.06 16 31 H 0.11 5.48 6.37 -2.92 -0.02 5.46 16 32 H 0.11 5.22 8.06 -2.91 -0.02 5.20 16 33 H 0.29 13.43 8.30 -92.71 -0.77 12.66 16 34 H 0.12 6.47 6.44 -2.91 -0.02 6.45 16 35 H 0.12 1.23 6.21 -2.39 -0.01 1.22 16 36 H 0.12 1.31 8.05 -2.39 -0.02 1.29 16 37 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.07 1.02 7.85 -2.39 -0.02 1.00 16 39 H 0.07 0.98 7.90 -2.39 -0.02 0.96 16 40 H 0.07 1.00 6.04 -2.39 -0.01 0.98 16 41 H 0.07 1.07 7.80 -2.39 -0.02 1.05 16 42 H 0.03 0.77 8.11 -2.39 -0.02 0.75 16 Total: -1.00 -65.28 352.80 4.66 -60.62 By element: Atomic # 1 Polarization: 32.45 SS G_CDS: 0.53 Total: 32.98 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: 5.86 Total: -15.60 kcal Atomic # 7 Polarization: -82.90 SS G_CDS: -3.62 Total: -86.53 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -0.06 Total: -28.17 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 2.03 Total: 40.10 kcal Atomic # 17 Polarization: -3.31 SS G_CDS: -0.08 Total: -3.39 kcal Total: -65.28 4.66 -60.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334729284.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.117 kcal (2) G-P(sol) polarization free energy of solvation -65.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds