Wall clock time and date at job start Sat Apr 11 2020 00:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.58545 * 2 1 4 4 C 1.53197 * 109.58671 * 239.71978 * 2 1 3 5 5 C 1.53037 * 109.31310 * 185.57715 * 4 2 1 6 6 C 1.53043 * 109.53941 * 61.36462 * 5 4 2 7 7 C 1.53191 * 109.31433 * 298.63533 * 6 5 4 8 8 N 1.46930 * 109.58759 * 120.43112 * 2 1 3 9 9 C 1.34776 * 120.62617 * 353.39525 * 8 2 1 10 10 O 1.21576 * 120.00544 * 4.25646 * 9 8 2 11 11 N 1.34777 * 119.99594 * 184.25404 * 9 8 2 12 12 C 1.39273 * 119.99937 * 184.74310 * 11 9 8 13 13 C 1.39469 * 119.84083 * 333.23195 * 12 11 9 14 14 C 1.36369 * 120.17676 * 179.97438 * 13 12 11 15 15 C 1.40882 * 119.85385 * 0.02562 * 14 13 12 16 16 C 1.41162 * 120.15710 * 179.97438 * 15 14 13 17 17 H 1.07994 * 120.00130 * 20.51690 * 16 15 14 18 18 C 1.39894 * 119.99516 * 200.51624 * 16 15 14 19 19 N 1.30880 * 120.00310 * 18.50089 * 18 16 15 20 20 Si 1.86805 * 119.99621 * 198.49619 * 18 16 15 21 21 H 1.48500 * 109.46828 * 60.00403 * 20 18 16 22 22 H 1.48497 * 109.46587 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47029 * 300.00210 * 20 18 16 24 24 C 1.40844 * 119.68638 * 359.97438 * 15 14 13 25 25 C 1.36477 * 119.81276 * 359.73651 * 24 15 14 26 26 Cl 1.73599 * 119.92634 * 180.25361 * 25 24 15 27 27 H 1.09004 * 109.47058 * 188.47539 * 1 2 3 28 28 H 1.08998 * 109.47049 * 68.47524 * 1 2 3 29 29 H 1.09001 * 109.47382 * 308.47605 * 1 2 3 30 30 H 1.09005 * 109.49757 * 305.52895 * 4 2 1 31 31 H 1.08998 * 109.49925 * 65.62769 * 4 2 1 32 32 H 1.09003 * 109.46217 * 181.38174 * 5 4 2 33 33 H 1.08999 * 109.46225 * 301.34559 * 5 4 2 34 34 H 1.09007 * 109.49393 * 58.58314 * 6 5 4 35 35 H 1.08996 * 109.49869 * 178.64855 * 6 5 4 36 36 H 1.09000 * 109.59136 * 174.41621 * 7 6 5 37 37 H 1.08998 * 109.59001 * 294.84697 * 7 6 5 38 38 H 0.96999 * 120.00121 * 4.74674 * 11 9 8 39 39 H 1.07999 * 119.90485 * 359.97438 * 13 12 11 40 40 H 1.08006 * 120.07298 * 180.02562 * 14 13 12 41 41 H 0.97002 * 120.00064 * 179.97438 * 19 18 16 42 42 H 1.07997 * 120.09075 * 180.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7278 -1.2464 5 6 3.5674 -0.8464 -1.1713 6 6 3.9569 -1.6658 0.0613 7 6 3.4651 -0.9487 1.3225 8 7 2.0226 -0.7011 1.1936 9 6 1.1673 -1.1094 2.1519 10 8 -0.0304 -0.9680 1.9983 11 7 1.6399 -1.6744 3.2806 12 6 0.7550 -2.1857 4.2267 13 6 -0.5338 -1.6620 4.3258 14 6 -1.4060 -2.1579 5.2494 15 6 -1.0028 -3.2017 6.1053 16 6 -1.9003 -3.7194 7.0640 17 1 -2.9634 -3.5738 6.9425 18 6 -1.4124 -4.4213 8.1715 19 7 -0.1579 -4.2983 8.5235 20 14 -2.5518 -5.5339 9.1480 21 1 -3.0889 -6.5951 8.2589 22 1 -1.7970 -6.1578 10.2644 23 1 -3.6750 -4.7327 9.6972 24 6 0.3001 -3.7261 6.0000 25 6 1.1603 -3.2239 5.0670 26 17 2.7648 -3.8726 4.9302 27 1 -0.3633 -1.0165 0.1515 28 1 -0.3633 0.3770 -0.9560 29 1 -0.3634 0.6394 0.8045 30 1 1.6029 -1.7237 -1.2936 31 1 1.7660 -0.1641 -2.1371 32 1 3.9378 -1.3422 -2.0687 33 1 4.0061 0.1488 -1.0992 34 1 3.4982 -2.6529 0.0017 35 1 5.0411 -1.7702 0.1010 36 1 3.6518 -1.5747 2.1951 37 1 3.9903 0.0001 1.4317 38 1 2.5964 -1.7249 3.4340 39 1 -0.8417 -0.8616 3.6694 40 1 -2.4038 -1.7514 5.3245 41 1 0.1803 -4.7847 9.2916 42 1 0.6160 -4.5266 6.6526 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334729372.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:44:07 Heat of formation + Delta-G solvation = -1.184047 kcal Electronic energy + Delta-G solvation = -25205.704777 eV Core-core repulsion = 21597.727820 eV Total energy + Delta-G solvation = -3607.976957 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.119 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.62235 -38.31624 -36.98412 -35.50504 -34.78919 -33.50011 -32.66774 -32.03597 -29.35838 -28.90907 -27.40879 -25.22913 -24.41592 -22.41598 -21.80463 -21.06211 -20.48745 -19.16143 -17.78760 -17.34622 -16.53985 -15.63059 -15.43777 -15.04763 -14.63068 -14.49880 -14.30244 -13.98121 -13.72900 -13.55494 -13.05284 -12.91352 -12.65080 -12.40940 -12.21848 -11.98635 -11.79786 -11.76674 -11.22994 -11.18225 -11.07603 -11.03563 -10.91321 -10.78256 -10.70857 -10.48173 -10.30276 -9.96420 -9.77809 -9.58374 -8.94479 -8.51128 -8.39885 -7.48980 -7.05507 -6.83199 -4.36701 2.51921 2.87294 2.92249 3.03694 3.05477 3.12642 3.21388 3.66711 3.87082 4.22914 4.51335 4.62849 4.69869 4.70960 4.92432 5.14965 5.25969 5.33768 5.51740 5.56056 5.57437 5.69577 5.71862 5.85347 5.89703 5.93558 6.12945 6.26021 6.37963 6.43653 6.59052 6.82689 6.87476 6.91406 7.05466 7.14901 7.25978 7.38303 7.72837 7.77635 7.96160 8.14527 8.42930 8.44344 8.78141 8.79073 9.08405 10.06775 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.023746 B = 0.003384 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.849665 B = 8272.624401 C = 9196.600647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.163 3.837 3 H 0.064 0.936 4 C -0.132 4.132 5 C -0.118 4.118 6 C -0.135 4.135 7 C 0.110 3.890 8 N -0.630 5.630 9 C 0.700 3.300 10 O -0.569 6.569 11 N -0.664 5.664 12 C 0.018 3.982 13 C -0.078 4.078 14 C -0.214 4.214 15 C 0.107 3.893 16 C -0.450 4.450 17 H 0.082 0.918 18 C 0.074 3.926 19 N -0.785 5.785 20 Si 0.911 3.089 21 H -0.262 1.262 22 H -0.278 1.278 23 H -0.264 1.264 24 C -0.152 4.152 25 C -0.019 4.019 26 Cl -0.125 7.125 27 H 0.082 0.918 28 H 0.035 0.965 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.392 0.608 39 H 0.134 0.866 40 H 0.100 0.900 41 H 0.284 0.716 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.436 4.881 -12.832 16.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.059 3.941 3 H 0.082 0.918 4 C -0.171 4.171 5 C -0.155 4.155 6 C -0.173 4.173 7 C -0.013 4.013 8 N -0.369 5.369 9 C 0.404 3.596 10 O -0.448 6.448 11 N -0.312 5.312 12 C -0.076 4.076 13 C -0.098 4.098 14 C -0.235 4.235 15 C 0.104 3.896 16 C -0.478 4.478 17 H 0.100 0.900 18 C -0.145 4.145 19 N -0.410 5.410 20 Si 0.735 3.265 21 H -0.187 1.187 22 H -0.202 1.202 23 H -0.189 1.189 24 C -0.173 4.173 25 C -0.048 4.048 26 Cl -0.097 7.097 27 H 0.101 0.899 28 H 0.054 0.946 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.229 0.771 39 H 0.151 0.849 40 H 0.118 0.882 41 H 0.095 0.905 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.888 4.859 -12.777 15.782 hybrid contribution 0.473 -0.661 0.635 1.032 sum 8.361 4.197 -12.141 15.328 Atomic orbital electron populations 1.22233 0.92330 1.05184 0.99644 1.21044 0.96033 0.94021 0.82953 0.91834 1.22033 0.95710 1.01704 0.97620 1.21499 0.96018 1.00233 0.97797 1.21911 1.00928 0.99756 0.94725 1.21602 0.81304 1.00039 0.98397 1.47328 1.06113 1.62376 1.21093 1.15903 0.85002 0.79004 0.79741 1.90868 1.13452 1.61564 1.78891 1.42360 1.09191 1.61558 1.18049 1.16705 0.92384 1.01060 0.97435 1.20760 0.91547 0.99779 0.97739 1.20771 0.99687 1.01140 1.01856 1.17545 0.91446 0.89395 0.91223 1.19550 0.94974 1.29157 1.04161 0.89983 1.25984 0.95597 0.95548 0.97381 1.69811 1.15332 1.33153 1.22667 0.86311 0.80674 0.80567 0.78924 1.18683 1.20249 1.18882 1.20996 0.94100 1.02950 0.99242 1.20306 0.84943 0.97552 1.01987 1.98238 1.27205 1.86386 1.97894 0.89877 0.94587 0.91317 0.91369 0.90994 0.91849 0.91903 0.91319 0.90863 0.90440 0.91564 0.77106 0.84856 0.88195 0.90524 0.84328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 7.62 37.16 0.28 -1.61 16 2 C 0.16 1.96 3.49 -67.60 -0.24 1.73 16 3 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 4 C -0.13 -1.29 5.36 -26.61 -0.14 -1.43 16 5 C -0.12 -0.97 5.88 -26.69 -0.16 -1.13 16 6 C -0.13 -1.22 6.08 -26.61 -0.16 -1.38 16 7 C 0.11 1.19 6.36 -3.71 -0.02 1.16 16 8 N -0.63 -8.73 2.97 -170.91 -0.51 -9.24 16 9 C 0.70 12.66 8.08 -86.92 -0.70 11.96 16 10 O -0.57 -11.71 8.67 5.30 0.05 -11.67 16 11 N -0.66 -12.45 5.01 -14.07 -0.07 -12.52 16 12 C 0.02 0.41 6.45 -83.52 -0.54 -0.12 16 13 C -0.08 -1.85 8.70 -39.80 -0.35 -2.19 16 14 C -0.21 -5.29 9.74 -39.26 -0.38 -5.67 16 15 C 0.11 2.81 5.62 -106.80 -0.60 2.21 16 16 C -0.45 -11.59 9.05 -37.85 -0.34 -11.93 16 17 H 0.08 2.02 7.91 -52.49 -0.42 1.61 16 18 C 0.07 1.79 5.16 -17.34 -0.09 1.70 16 19 N -0.78 -19.60 10.73 55.55 0.60 -19.00 16 20 Si 0.91 18.16 29.60 -169.99 -5.03 13.13 16 21 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 22 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 23 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 24 C -0.15 -3.89 8.44 -39.23 -0.33 -4.22 16 25 C -0.02 -0.45 6.30 -39.71 -0.25 -0.70 16 26 Cl -0.13 -2.44 27.78 -51.86 -1.44 -3.88 16 27 H 0.08 1.39 6.40 -51.93 -0.33 1.05 16 28 H 0.04 0.41 8.13 -51.93 -0.42 -0.01 16 29 H 0.07 1.08 7.06 -51.93 -0.37 0.72 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.86 5.71 -51.93 -0.30 0.57 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.39 6.47 5.35 -40.82 -0.22 6.25 16 39 H 0.13 3.12 5.55 -52.49 -0.29 2.83 16 40 H 0.10 2.32 8.06 -52.48 -0.42 1.90 16 41 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 42 H 0.14 3.66 5.87 -52.49 -0.31 3.35 16 LS Contribution 341.88 15.07 5.15 5.15 Total: -1.00 -27.56 341.88 -10.87 -38.43 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -5.59 Total: 11.23 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -4.02 Total: -11.63 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 0.02 Total: -40.76 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.05 Total: -11.67 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.03 Total: 13.13 kcal Atomic # 17 Polarization: -2.44 SS G_CDS: -1.44 Total: -3.88 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -27.56 -10.87 -38.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334729372.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.246 kcal (2) G-P(sol) polarization free energy of solvation -27.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds