Wall clock time and date at job start Sat Apr 11 2020 00:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.58545 * 2 1 4 4 C 1.53197 * 109.58671 * 239.71978 * 2 1 3 5 5 C 1.53037 * 109.31310 * 185.57715 * 4 2 1 6 6 C 1.53043 * 109.53941 * 61.36462 * 5 4 2 7 7 C 1.53191 * 109.31433 * 298.63533 * 6 5 4 8 8 N 1.46930 * 109.58759 * 120.43112 * 2 1 3 9 9 C 1.34776 * 120.62617 * 353.39525 * 8 2 1 10 10 O 1.21576 * 120.00544 * 4.25646 * 9 8 2 11 11 N 1.34777 * 119.99594 * 184.25404 * 9 8 2 12 12 C 1.39273 * 119.99937 * 184.74310 * 11 9 8 13 13 C 1.39469 * 119.84083 * 333.23195 * 12 11 9 14 14 C 1.36369 * 120.17676 * 179.97438 * 13 12 11 15 15 C 1.40882 * 119.85385 * 0.02562 * 14 13 12 16 16 C 1.41162 * 120.15710 * 179.97438 * 15 14 13 17 17 H 1.07994 * 120.00130 * 20.51690 * 16 15 14 18 18 C 1.39894 * 119.99516 * 200.51624 * 16 15 14 19 19 N 1.30880 * 120.00310 * 18.50089 * 18 16 15 20 20 Si 1.86805 * 119.99621 * 198.49619 * 18 16 15 21 21 H 1.48500 * 109.46828 * 60.00403 * 20 18 16 22 22 H 1.48497 * 109.46587 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47029 * 300.00210 * 20 18 16 24 24 C 1.40844 * 119.68638 * 359.97438 * 15 14 13 25 25 C 1.36477 * 119.81276 * 359.73651 * 24 15 14 26 26 Cl 1.73599 * 119.92634 * 180.25361 * 25 24 15 27 27 H 1.09004 * 109.47058 * 188.47539 * 1 2 3 28 28 H 1.08998 * 109.47049 * 68.47524 * 1 2 3 29 29 H 1.09001 * 109.47382 * 308.47605 * 1 2 3 30 30 H 1.09005 * 109.49757 * 305.52895 * 4 2 1 31 31 H 1.08998 * 109.49925 * 65.62769 * 4 2 1 32 32 H 1.09003 * 109.46217 * 181.38174 * 5 4 2 33 33 H 1.08999 * 109.46225 * 301.34559 * 5 4 2 34 34 H 1.09007 * 109.49393 * 58.58314 * 6 5 4 35 35 H 1.08996 * 109.49869 * 178.64855 * 6 5 4 36 36 H 1.09000 * 109.59136 * 174.41621 * 7 6 5 37 37 H 1.08998 * 109.59001 * 294.84697 * 7 6 5 38 38 H 0.96999 * 120.00121 * 4.74674 * 11 9 8 39 39 H 1.07999 * 119.90485 * 359.97438 * 13 12 11 40 40 H 1.08006 * 120.07298 * 180.02562 * 14 13 12 41 41 H 0.97002 * 120.00064 * 179.97438 * 19 18 16 42 42 H 1.07997 * 120.09075 * 180.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7278 -1.2464 5 6 3.5674 -0.8464 -1.1713 6 6 3.9569 -1.6658 0.0613 7 6 3.4651 -0.9487 1.3225 8 7 2.0226 -0.7011 1.1936 9 6 1.1673 -1.1094 2.1519 10 8 -0.0304 -0.9680 1.9983 11 7 1.6399 -1.6744 3.2806 12 6 0.7550 -2.1857 4.2267 13 6 -0.5338 -1.6620 4.3258 14 6 -1.4060 -2.1579 5.2494 15 6 -1.0028 -3.2017 6.1053 16 6 -1.9003 -3.7194 7.0640 17 1 -2.9634 -3.5738 6.9425 18 6 -1.4124 -4.4213 8.1715 19 7 -0.1579 -4.2983 8.5235 20 14 -2.5518 -5.5339 9.1480 21 1 -3.0889 -6.5951 8.2589 22 1 -1.7970 -6.1578 10.2644 23 1 -3.6750 -4.7327 9.6972 24 6 0.3001 -3.7261 6.0000 25 6 1.1603 -3.2239 5.0670 26 17 2.7648 -3.8726 4.9302 27 1 -0.3633 -1.0165 0.1515 28 1 -0.3633 0.3770 -0.9560 29 1 -0.3634 0.6394 0.8045 30 1 1.6029 -1.7237 -1.2936 31 1 1.7660 -0.1641 -2.1371 32 1 3.9378 -1.3422 -2.0687 33 1 4.0061 0.1488 -1.0992 34 1 3.4982 -2.6529 0.0017 35 1 5.0411 -1.7702 0.1010 36 1 3.6518 -1.5747 2.1951 37 1 3.9903 0.0001 1.4317 38 1 2.5964 -1.7249 3.4340 39 1 -0.8417 -0.8616 3.6694 40 1 -2.4038 -1.7514 5.3245 41 1 0.1803 -4.7847 9.2916 42 1 0.6160 -4.5266 6.6526 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334729372.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:44:06 Heat of formation + Delta-G solvation = -14.156518 kcal Electronic energy + Delta-G solvation = -25206.267305 eV Core-core repulsion = 21597.727820 eV Total energy + Delta-G solvation = -3608.539485 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.119 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.94422 -39.85048 -38.35162 -37.24336 -36.35994 -35.12837 -33.69950 -33.23834 -31.22794 -30.67146 -28.44507 -26.91944 -25.45028 -23.78872 -23.33374 -22.41177 -21.84821 -20.47044 -19.44122 -18.86102 -18.04549 -17.22428 -16.83217 -16.31984 -16.03989 -15.76145 -15.41094 -15.29445 -14.91180 -14.81172 -14.51018 -14.47346 -14.19529 -13.87829 -13.58012 -13.37671 -13.20667 -12.87626 -12.85793 -12.71481 -12.58847 -12.20379 -12.06913 -11.96702 -11.85152 -11.76583 -11.58170 -11.53451 -11.50059 -11.30133 -10.69003 -9.99498 -9.56004 -9.36656 -8.85605 -8.64366 -6.28857 0.70918 1.00687 1.39443 1.40497 1.49498 1.53611 1.68170 2.18087 2.21502 2.69399 2.95543 3.63882 3.80805 3.87583 3.94455 4.09225 4.31889 4.36245 4.40412 4.53063 4.64795 4.70998 4.79111 4.86316 4.92325 4.99565 5.01777 5.04773 5.13003 5.19729 5.24222 5.26978 5.29257 5.42980 5.47924 5.51449 5.68274 5.82205 5.87894 6.04843 6.09802 6.27622 6.52594 6.87246 6.89077 7.00391 7.64282 8.27274 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.023746 B = 0.003384 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.849665 B = 8272.624401 C = 9196.600647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.157 3.843 3 H 0.086 0.914 4 C -0.127 4.127 5 C -0.114 4.114 6 C -0.131 4.131 7 C 0.102 3.898 8 N -0.623 5.623 9 C 0.693 3.307 10 O -0.600 6.600 11 N -0.662 5.662 12 C 0.030 3.970 13 C -0.086 4.086 14 C -0.227 4.227 15 C 0.080 3.920 16 C -0.485 4.485 17 H 0.081 0.919 18 C 0.037 3.963 19 N -0.813 5.813 20 Si 0.984 3.016 21 H -0.261 1.261 22 H -0.266 1.266 23 H -0.259 1.259 24 C -0.171 4.171 25 C -0.027 4.027 26 Cl -0.091 7.091 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.042 0.958 30 H 0.048 0.952 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.049 0.951 35 H 0.098 0.902 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.404 0.596 39 H 0.135 0.865 40 H 0.104 0.896 41 H 0.292 0.708 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.313 5.213 -14.180 18.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 H 0.104 0.896 4 C -0.165 4.165 5 C -0.151 4.151 6 C -0.170 4.170 7 C -0.020 4.020 8 N -0.361 5.361 9 C 0.396 3.604 10 O -0.480 6.480 11 N -0.311 5.311 12 C -0.066 4.066 13 C -0.106 4.106 14 C -0.247 4.247 15 C 0.076 3.924 16 C -0.513 4.513 17 H 0.099 0.901 18 C -0.180 4.180 19 N -0.438 5.438 20 Si 0.804 3.196 21 H -0.186 1.186 22 H -0.190 1.190 23 H -0.183 1.183 24 C -0.191 4.191 25 C -0.056 4.056 26 Cl -0.063 7.063 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.112 0.888 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.116 0.884 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.242 0.758 39 H 0.152 0.848 40 H 0.122 0.878 41 H 0.103 0.897 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 9.828 5.217 -14.175 18.020 hybrid contribution 0.012 -0.677 0.903 1.129 sum 9.840 4.539 -13.271 17.134 Atomic orbital electron populations 1.22048 0.94071 1.02533 0.99999 1.21295 0.94711 0.95359 0.83184 0.89629 1.21999 0.96950 1.00563 0.96997 1.21505 0.94547 1.01179 0.97884 1.21908 1.02243 0.98635 0.94167 1.21909 0.79319 1.01529 0.99280 1.47441 1.07097 1.61234 1.20309 1.16152 0.85186 0.78883 0.80180 1.90865 1.15086 1.62593 1.79472 1.42260 1.09248 1.61735 1.17880 1.16753 0.92453 1.00117 0.97272 1.20862 0.92197 1.00009 0.97570 1.20916 1.00244 1.01299 1.02252 1.17852 0.92270 0.90169 0.92063 1.19794 0.95022 1.31155 1.05360 0.90073 1.26792 0.97142 0.96200 0.97848 1.69852 1.16849 1.33735 1.23343 0.85222 0.78586 0.78310 0.77476 1.18586 1.19000 1.18296 1.20931 0.94610 1.03382 1.00206 1.20335 0.86407 0.97461 1.01362 1.98232 1.24374 1.85929 1.97756 0.93241 0.91973 0.93860 0.93321 0.88771 0.90310 0.90189 0.93187 0.88359 0.91098 0.89050 0.75751 0.84800 0.87812 0.89737 0.85557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.55 7.62 71.98 0.55 -3.00 16 2 C 0.16 3.47 3.49 44.97 0.16 3.63 16 3 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 4 C -0.13 -2.11 5.36 30.67 0.16 -1.95 16 5 C -0.11 -1.42 5.88 30.62 0.18 -1.24 16 6 C -0.13 -1.96 6.08 30.67 0.19 -1.78 16 7 C 0.10 1.92 6.36 86.36 0.55 2.47 16 8 N -0.62 -16.38 2.97 -812.89 -2.42 -18.80 16 9 C 0.69 25.05 8.08 179.05 1.45 26.50 16 10 O -0.60 -25.37 8.67 -3.96 -0.03 -25.40 16 11 N -0.66 -24.72 5.01 -316.69 -1.59 -26.31 16 12 C 0.03 1.35 6.45 38.58 0.25 1.60 16 13 C -0.09 -4.21 8.70 22.13 0.19 -4.02 16 14 C -0.23 -11.70 9.74 22.48 0.22 -11.48 16 15 C 0.08 4.35 5.62 -21.28 -0.12 4.23 16 16 C -0.48 -25.88 9.05 23.39 0.21 -25.67 16 17 H 0.08 4.17 7.91 -2.91 -0.02 4.14 16 18 C 0.04 1.80 5.16 85.24 0.44 2.24 16 19 N -0.81 -41.31 10.73 21.82 0.23 -41.08 16 20 Si 0.98 37.41 29.60 68.60 2.03 39.44 16 21 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 22 H -0.27 -9.50 7.11 99.48 0.71 -8.79 16 23 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 24 C -0.17 -8.98 8.44 22.50 0.19 -8.79 16 25 C -0.03 -1.26 6.30 22.18 0.14 -1.12 16 26 Cl -0.09 -3.49 27.78 -2.72 -0.08 -3.57 16 27 H 0.05 1.69 6.40 -2.38 -0.02 1.68 16 28 H 0.06 1.34 8.13 -2.39 -0.02 1.32 16 29 H 0.04 1.39 7.06 -2.39 -0.02 1.37 16 30 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 35 H 0.10 1.02 8.14 -2.39 -0.02 1.01 16 36 H 0.07 1.43 5.71 -2.39 -0.01 1.42 16 37 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.40 12.94 5.35 -92.71 -0.50 12.44 16 39 H 0.13 6.51 5.55 -2.91 -0.02 6.50 16 40 H 0.10 5.08 8.06 -2.91 -0.02 5.06 16 41 H 0.29 13.37 8.30 -92.71 -0.77 12.60 16 42 H 0.13 6.89 5.87 -2.91 -0.02 6.87 16 Total: -1.00 -62.40 341.88 3.46 -58.94 By element: Atomic # 1 Polarization: 34.60 SS G_CDS: 0.56 Total: 35.16 kcal Atomic # 6 Polarization: -23.14 SS G_CDS: 4.76 Total: -18.39 kcal Atomic # 7 Polarization: -82.41 SS G_CDS: -3.77 Total: -86.18 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.03 Total: -25.40 kcal Atomic # 14 Polarization: 37.41 SS G_CDS: 2.03 Total: 39.44 kcal Atomic # 17 Polarization: -3.49 SS G_CDS: -0.08 Total: -3.57 kcal Total: -62.40 3.46 -58.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334729372.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.785 kcal (2) G-P(sol) polarization free energy of solvation -62.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds