Wall clock time and date at job start Sat Apr 11 2020 00:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.52440 * 2 1 4 4 C 1.53046 * 109.49524 * 239.91689 * 2 1 3 5 5 C 1.53035 * 109.53581 * 178.68701 * 4 2 1 6 6 C 1.53196 * 109.31676 * 61.36279 * 5 4 2 7 7 N 1.46928 * 108.77139 * 305.36774 * 6 5 4 8 8 C 1.34785 * 120.62480 * 233.58013 * 7 6 5 9 9 O 1.21579 * 119.99475 * 174.76388 * 8 7 6 10 10 N 1.34772 * 120.00374 * 354.76433 * 8 7 6 11 11 C 1.39268 * 120.00265 * 184.38695 * 10 8 7 12 12 C 1.39466 * 119.83642 * 330.70879 * 11 10 8 13 13 C 1.36380 * 120.17898 * 180.27974 * 12 11 10 14 14 C 1.40891 * 119.84755 * 359.73892 * 13 12 11 15 15 C 1.41156 * 120.16062 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99270 * 29.56938 * 15 14 13 17 17 C 1.39885 * 120.00120 * 209.57576 * 15 14 13 18 18 N 1.30878 * 119.99925 * 10.46273 * 17 15 14 19 19 Si 1.86797 * 119.99774 * 190.46569 * 17 15 14 20 20 H 1.48505 * 109.47411 * 59.99851 * 19 17 15 21 21 H 1.48499 * 109.47350 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47180 * 299.99668 * 19 17 15 23 23 C 1.40843 * 119.68209 * 0.02562 * 14 13 12 24 24 C 1.36466 * 119.81977 * 0.02562 * 23 14 13 25 25 Cl 1.73601 * 119.92840 * 179.97438 * 24 23 14 26 26 C 1.46924 * 118.74166 * 53.86221 * 7 6 5 27 27 H 1.09000 * 109.47365 * 180.08282 * 1 2 3 28 28 H 1.08999 * 109.47383 * 300.08517 * 1 2 3 29 29 H 1.09004 * 109.47252 * 60.08548 * 1 2 3 30 30 H 1.08998 * 109.45826 * 58.66396 * 4 2 1 31 31 H 1.09006 * 109.44864 * 298.69501 * 4 2 1 32 32 H 1.09003 * 109.50080 * 301.41353 * 5 4 2 33 33 H 1.08997 * 109.52388 * 181.33282 * 5 4 2 34 34 H 1.09000 * 109.58513 * 185.57870 * 6 5 4 35 35 H 1.09004 * 109.70090 * 65.22184 * 6 5 4 36 36 H 0.97000 * 119.99399 * 4.38550 * 10 8 7 37 37 H 1.07998 * 119.91658 * 0.02562 * 12 11 10 38 38 H 1.07997 * 120.07773 * 179.76650 * 13 12 11 39 39 H 0.97008 * 119.99869 * 180.02562 * 18 17 15 40 40 H 1.08004 * 120.08836 * 180.02562 * 23 14 13 41 41 H 1.08993 * 109.58906 * 65.92333 * 26 7 6 42 42 H 1.08999 * 109.58343 * 186.35159 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7232 -1.2484 5 6 3.5708 -0.6952 -1.2660 6 6 4.1052 -1.4268 -0.0307 7 7 3.5045 -0.8291 1.1696 8 6 4.2811 -0.3864 2.1783 9 8 3.7795 0.1917 3.1229 10 7 5.6136 -0.5846 2.1399 11 6 6.4050 -0.2094 3.2227 12 6 6.0137 0.8573 4.0315 13 6 6.7863 1.2343 5.0902 14 6 7.9798 0.5399 5.3699 15 6 8.7842 0.9241 6.4643 16 1 8.3312 1.3733 7.3359 17 6 10.1678 0.7232 6.4201 18 7 10.7426 0.3730 5.2977 19 14 11.1949 0.9547 7.9631 20 1 10.7292 0.0140 9.0136 21 1 12.6216 0.6831 7.6534 22 1 11.0504 2.3504 8.4491 23 6 8.3666 -0.5397 4.5521 24 6 7.5840 -0.9049 3.4955 25 17 8.0584 -2.2347 2.4853 26 6 2.0410 -0.7290 1.2520 27 1 -0.3634 -1.0276 0.0015 28 1 -0.3634 0.5151 0.8892 29 1 -0.3634 0.5125 -0.8908 30 1 1.6581 -0.2246 -2.1389 31 1 1.6967 -1.7574 -1.2350 32 1 3.9160 0.3387 -1.2541 33 1 3.9338 -1.1895 -2.1670 34 1 5.1895 -1.3247 0.0138 35 1 3.8395 -2.4826 -0.0853 36 1 6.0214 -0.9887 1.3580 37 1 5.0986 1.3890 3.8163 38 1 6.4837 2.0630 5.7131 39 1 11.7021 0.2334 5.2671 40 1 9.2800 -1.0769 4.7607 41 1 1.6084 -1.7283 1.2986 42 1 1.7630 -0.1662 2.1432 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334732090.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:44:13 Heat of formation + Delta-G solvation = -35.075943 kcal Electronic energy + Delta-G solvation = -24787.717706 eV Core-core repulsion = 21178.271086 eV Total energy + Delta-G solvation = -3609.446620 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.119 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.80870 -39.84720 -38.57576 -37.25301 -36.21236 -35.22450 -34.26254 -32.75652 -31.29270 -30.80838 -27.87487 -27.11524 -25.88801 -23.59650 -23.24457 -22.74003 -21.40741 -20.45982 -19.57927 -19.15772 -18.08040 -17.19423 -16.66242 -16.48134 -16.07557 -15.92768 -15.44956 -15.34656 -14.84883 -14.72077 -14.66521 -14.36202 -14.14730 -13.92815 -13.64597 -13.46997 -13.05412 -12.90749 -12.84477 -12.72368 -12.64284 -12.18358 -12.06627 -12.02473 -11.89054 -11.78973 -11.64418 -11.54130 -11.33376 -11.27887 -10.93113 -10.60709 -9.68127 -9.40611 -8.80954 -8.60370 -6.33124 0.66832 0.96457 1.36490 1.41591 1.49553 1.53173 1.63815 2.11331 2.23052 2.71772 2.91839 3.58961 3.76035 3.84460 3.91144 4.05757 4.29653 4.33924 4.41596 4.51951 4.65269 4.70857 4.80458 4.82109 4.90636 4.93007 4.93782 4.99670 5.08695 5.17955 5.23046 5.26554 5.28114 5.33992 5.45813 5.49100 5.55781 5.68412 5.85902 5.97228 6.05870 6.24340 6.51824 6.86422 6.88916 6.92330 7.53890 8.34622 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.025902 B = 0.003053 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.746639 B = 9168.708334 C = 9981.995010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.103 4.103 3 H 0.055 0.945 4 C -0.108 4.108 5 C -0.131 4.131 6 C 0.102 3.898 7 N -0.625 5.625 8 C 0.696 3.304 9 O -0.617 6.617 10 N -0.659 5.659 11 C 0.037 3.963 12 C -0.087 4.087 13 C -0.217 4.217 14 C 0.083 3.917 15 C -0.489 4.489 16 H 0.081 0.919 17 C 0.034 3.966 18 N -0.826 5.826 19 Si 0.986 3.014 20 H -0.261 1.261 21 H -0.268 1.268 22 H -0.260 1.260 23 C -0.154 4.154 24 C -0.028 4.028 25 Cl -0.088 7.088 26 C 0.130 3.870 27 H 0.068 0.932 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.053 0.947 33 H 0.101 0.899 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.407 0.593 37 H 0.127 0.873 38 H 0.107 0.893 39 H 0.290 0.710 40 H 0.121 0.879 41 H 0.081 0.919 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.114 -4.980 -14.134 19.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 H 0.073 0.927 4 C -0.146 4.146 5 C -0.169 4.169 6 C -0.020 4.020 7 N -0.362 5.362 8 C 0.398 3.602 9 O -0.498 6.498 10 N -0.308 5.308 11 C -0.058 4.058 12 C -0.108 4.108 13 C -0.237 4.237 14 C 0.080 3.920 15 C -0.519 4.519 16 H 0.099 0.901 17 C -0.181 4.181 18 N -0.452 5.452 19 Si 0.806 3.194 20 H -0.185 1.185 21 H -0.192 1.192 22 H -0.185 1.185 23 C -0.175 4.175 24 C -0.057 4.057 25 Cl -0.060 7.060 26 C 0.008 3.992 27 H 0.087 0.913 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.119 0.881 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.246 0.754 37 H 0.145 0.855 38 H 0.125 0.875 39 H 0.100 0.900 40 H 0.139 0.861 41 H 0.099 0.901 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.231 -4.772 -13.713 18.985 hybrid contribution 0.985 0.017 0.363 1.050 sum -11.246 -4.755 -13.351 18.092 Atomic orbital electron populations 1.21728 0.92935 1.02827 1.02289 1.21563 0.96998 0.99033 0.94664 0.92677 1.21568 0.94403 1.01510 0.97081 1.21918 0.96881 1.00707 0.97379 1.21927 0.97635 0.98448 0.84006 1.47363 1.06900 1.64167 1.17736 1.16046 0.81263 0.79797 0.83072 1.90808 1.73800 1.48622 1.36600 1.42104 1.04965 1.64913 1.18860 1.16763 0.93833 0.99962 0.95288 1.20716 0.99243 0.95183 0.95622 1.21007 0.98970 1.02738 1.00978 1.17853 0.91723 0.89702 0.92751 1.19735 0.92573 1.37166 1.02409 0.90130 1.26740 0.99280 0.91808 1.00229 1.69836 1.13124 1.34610 1.27678 0.85191 0.76754 0.79899 0.77526 1.18523 1.19194 1.18466 1.20826 1.00810 0.99192 0.96650 1.20334 0.97016 0.92316 0.96035 1.98238 1.92004 1.46980 1.68749 1.21764 0.77015 1.01241 0.99193 0.91308 0.93092 0.91206 0.90236 0.90311 0.92812 0.88088 0.90918 0.89208 0.75381 0.85540 0.87533 0.89975 0.86088 0.90058 0.91481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.20 71.98 0.66 -1.15 16 2 C -0.10 -1.75 2.89 -10.57 -0.03 -1.78 16 3 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 4 C -0.11 -1.34 5.16 30.62 0.16 -1.18 16 5 C -0.13 -1.85 6.08 30.67 0.19 -1.66 16 6 C 0.10 1.90 6.38 86.36 0.55 2.45 16 7 N -0.62 -16.70 2.97 -836.06 -2.48 -19.18 16 8 C 0.70 25.83 8.16 179.05 1.46 27.29 16 9 O -0.62 -27.80 12.81 -3.97 -0.05 -27.85 16 10 N -0.66 -24.71 5.01 -316.70 -1.59 -26.29 16 11 C 0.04 1.70 6.41 38.58 0.25 1.94 16 12 C -0.09 -4.29 8.67 22.13 0.19 -4.10 16 13 C -0.22 -11.17 9.74 22.49 0.22 -10.95 16 14 C 0.08 4.50 5.54 -21.28 -0.12 4.39 16 15 C -0.49 -26.15 9.04 23.39 0.21 -25.94 16 16 H 0.08 4.14 7.87 -2.91 -0.02 4.11 16 17 C 0.03 1.69 5.25 85.23 0.45 2.14 16 18 N -0.83 -42.47 10.87 21.82 0.24 -42.24 16 19 Si 0.99 37.84 29.57 68.60 2.03 39.87 16 20 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 21 H -0.27 -9.71 7.11 99.48 0.71 -9.01 16 22 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 23 C -0.15 -8.08 8.36 22.49 0.19 -7.89 16 24 C -0.03 -1.31 6.30 22.18 0.14 -1.17 16 25 Cl -0.09 -3.34 27.82 -2.72 -0.08 -3.42 16 26 C 0.13 2.97 5.75 86.51 0.50 3.46 16 27 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.07 1.40 5.65 -2.39 -0.01 1.39 16 35 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.41 12.89 5.36 -92.71 -0.50 12.40 16 37 H 0.13 6.25 5.75 -2.91 -0.02 6.23 16 38 H 0.11 5.20 8.06 -2.91 -0.02 5.17 16 39 H 0.29 13.50 8.30 -92.70 -0.77 12.74 16 40 H 0.12 6.59 6.26 -2.91 -0.02 6.57 16 41 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.07 1.91 7.00 -2.39 -0.02 1.89 16 Total: -1.00 -63.99 348.96 3.64 -60.36 By element: Atomic # 1 Polarization: 32.35 SS G_CDS: 0.55 Total: 32.90 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: 5.01 Total: -14.15 kcal Atomic # 7 Polarization: -83.88 SS G_CDS: -3.83 Total: -87.71 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -0.05 Total: -27.85 kcal Atomic # 14 Polarization: 37.84 SS G_CDS: 2.03 Total: 39.87 kcal Atomic # 17 Polarization: -3.34 SS G_CDS: -0.08 Total: -3.42 kcal Total: -63.99 3.64 -60.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334732090.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.281 kcal (2) G-P(sol) polarization free energy of solvation -63.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds