Wall clock time and date at job start Sat Apr 11 2020 00:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.52332 * 2 1 4 4 C 1.53047 * 109.49405 * 120.07395 * 2 1 3 5 5 C 1.53035 * 109.53901 * 181.32098 * 4 2 1 6 6 C 1.53635 * 109.23900 * 298.51066 * 5 4 2 7 7 N 1.46925 * 108.54025 * 54.85591 * 6 5 4 8 8 C 1.34778 * 120.62646 * 126.37093 * 7 6 5 9 9 O 1.21584 * 119.99879 * 185.22195 * 8 7 6 10 10 N 1.34774 * 119.99993 * 5.22837 * 8 7 6 11 11 C 1.39276 * 119.99609 * 184.64370 * 10 8 7 12 12 C 1.39468 * 119.84162 * 325.21239 * 11 10 8 13 13 C 1.36375 * 120.18234 * 179.97438 * 12 11 10 14 14 C 1.40883 * 119.84866 * 0.02562 * 13 12 11 15 15 C 1.41154 * 120.16069 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99622 * 34.81904 * 15 14 13 17 17 C 1.39888 * 120.00502 * 214.81644 * 15 14 13 18 18 N 1.30885 * 119.99898 * 355.49207 * 17 15 14 19 19 Si 1.86793 * 120.00082 * 175.48523 * 17 15 14 20 20 H 1.48499 * 109.47027 * 90.00409 * 19 17 15 21 21 H 1.48505 * 109.47400 * 210.00282 * 19 17 15 22 22 H 1.48494 * 109.47248 * 330.00432 * 19 17 15 23 23 C 1.40839 * 119.68442 * 0.02562 * 14 13 12 24 24 C 1.36479 * 119.81787 * 359.71371 * 23 14 13 25 25 Cl 1.73602 * 119.92811 * 180.27533 * 24 23 14 26 26 C 1.46923 * 118.73968 * 306.09033 * 7 6 5 27 27 H 1.08993 * 109.46873 * 180.08471 * 1 2 3 28 28 H 1.09002 * 109.47131 * 300.09114 * 1 2 3 29 29 H 1.09004 * 109.46312 * 60.08665 * 1 2 3 30 30 H 1.09004 * 109.46107 * 301.34089 * 4 2 1 31 31 H 1.08994 * 109.45853 * 61.29683 * 4 2 1 32 32 H 1.08997 * 109.50163 * 58.57812 * 5 4 2 33 33 H 1.08999 * 109.50201 * 178.68884 * 5 4 2 34 34 H 1.09001 * 109.73375 * 295.11940 * 6 5 4 35 35 H 1.09000 * 109.66378 * 174.55019 * 6 5 4 36 36 H 0.96995 * 120.00356 * 4.90831 * 10 8 7 37 37 H 1.08001 * 119.90742 * 359.97438 * 12 11 10 38 38 H 1.07997 * 120.07502 * 179.97438 * 13 12 11 39 39 H 0.96993 * 119.99912 * 180.02562 * 18 17 15 40 40 H 1.08004 * 120.09576 * 179.97438 * 23 14 13 41 41 H 1.09001 * 109.58399 * 173.64715 * 26 7 6 42 42 H 1.08997 * 109.58983 * 293.93722 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7230 1.2485 5 6 3.5708 -0.6949 1.2663 6 6 4.1051 -1.4318 0.0287 7 7 3.5047 -0.8292 -1.1693 8 6 4.2813 -0.3867 -2.1780 9 8 3.7803 0.1953 -3.1206 10 7 5.6132 -0.5893 -2.1418 11 6 6.4270 -0.0486 -3.1344 12 6 5.9568 0.0421 -4.4443 13 6 6.7475 0.5708 -5.4215 14 6 8.0430 1.0257 -5.1057 15 6 8.8672 1.5736 -6.1122 16 1 8.4305 2.1554 -6.9104 17 6 10.2497 1.3630 -6.0757 18 7 10.7893 0.7339 -5.0628 19 14 11.3255 1.9795 -7.4727 20 1 11.7787 3.3621 -7.1754 21 1 12.5070 1.0915 -7.6167 22 1 10.5461 1.9752 -8.7367 23 6 8.5121 0.9302 -3.7812 24 6 7.7076 0.4037 -2.8126 25 17 8.2804 0.2913 -1.1776 26 6 2.0414 -0.7240 -1.2494 27 1 -0.3633 -1.0276 0.0015 28 1 -0.3633 0.5153 0.8892 29 1 -0.3632 0.5125 -0.8908 30 1 1.6580 -0.2243 2.1390 31 1 1.6967 -1.7571 1.2355 32 1 3.9159 0.3390 1.2542 33 1 3.9333 -1.1895 2.1674 34 1 3.8338 -2.4862 0.0825 35 1 5.1896 -1.3333 -0.0171 36 1 6.0046 -1.1148 -1.4267 37 1 4.9637 -0.3073 -4.6853 38 1 6.3818 0.6399 -6.4353 39 1 11.7479 0.5882 -5.0373 40 1 9.5043 1.2765 -3.5318 41 1 1.7640 -0.1581 -2.1388 42 1 1.6055 -1.7217 -1.3002 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334732091.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:44:16 Heat of formation + Delta-G solvation = -36.395369 kcal Electronic energy + Delta-G solvation = -24818.948883 eV Core-core repulsion = 21209.445049 eV Total energy + Delta-G solvation = -3609.503834 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.119 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.78436 -39.85033 -38.57328 -37.23767 -36.20287 -35.20061 -34.25295 -32.73658 -31.30168 -30.79011 -27.87362 -27.10720 -25.89350 -23.54538 -23.24116 -22.75133 -21.43251 -20.42601 -19.55066 -19.20071 -18.07884 -17.18464 -16.66802 -16.46601 -15.98260 -15.90285 -15.51125 -15.38970 -14.98294 -14.73667 -14.46669 -14.36654 -14.16627 -13.91079 -13.55351 -13.45042 -13.12578 -12.95210 -12.80856 -12.71964 -12.62289 -12.15475 -12.06372 -12.02305 -11.88472 -11.77275 -11.65828 -11.56702 -11.28260 -11.23495 -11.01584 -10.61894 -9.66021 -9.39991 -8.78260 -8.54131 -6.37468 0.64736 0.96652 1.37378 1.42179 1.47463 1.56176 1.64313 2.12459 2.24425 2.73808 2.93294 3.54781 3.76191 3.85592 3.90886 4.05733 4.30190 4.33245 4.41589 4.51371 4.64807 4.71231 4.80615 4.82024 4.89095 4.92018 4.94686 4.99918 5.08477 5.17861 5.22167 5.28307 5.29646 5.33798 5.46950 5.49344 5.56501 5.69816 5.86905 5.96297 6.09244 6.23625 6.53256 6.87168 6.90867 6.92042 7.54594 8.38774 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.026088 B = 0.003092 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.014864 B = 9052.869596 C = 9884.139509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.104 4.104 3 H 0.051 0.949 4 C -0.108 4.108 5 C -0.131 4.131 6 C 0.102 3.898 7 N -0.625 5.625 8 C 0.696 3.304 9 O -0.619 6.619 10 N -0.660 5.660 11 C 0.043 3.957 12 C -0.083 4.083 13 C -0.209 4.209 14 C 0.079 3.921 15 C -0.490 4.490 16 H 0.079 0.921 17 C 0.030 3.970 18 N -0.834 5.834 19 Si 0.989 3.011 20 H -0.262 1.262 21 H -0.269 1.269 22 H -0.260 1.260 23 C -0.151 4.151 24 C -0.030 4.030 25 Cl -0.088 7.088 26 C 0.131 3.869 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.407 0.593 37 H 0.120 0.880 38 H 0.109 0.891 39 H 0.287 0.713 40 H 0.130 0.870 41 H 0.066 0.934 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.339 -5.821 13.664 19.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.124 4.124 3 H 0.070 0.930 4 C -0.145 4.145 5 C -0.169 4.169 6 C -0.020 4.020 7 N -0.361 5.361 8 C 0.399 3.601 9 O -0.500 6.500 10 N -0.310 5.310 11 C -0.052 4.052 12 C -0.104 4.104 13 C -0.229 4.229 14 C 0.076 3.924 15 C -0.520 4.520 16 H 0.097 0.903 17 C -0.183 4.183 18 N -0.462 5.462 19 Si 0.810 3.190 20 H -0.187 1.187 21 H -0.193 1.193 22 H -0.184 1.184 23 C -0.172 4.172 24 C -0.059 4.059 25 Cl -0.060 7.060 26 C 0.008 3.992 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.118 0.882 34 H 0.112 0.888 35 H 0.091 0.909 36 H 0.246 0.754 37 H 0.138 0.862 38 H 0.127 0.873 39 H 0.098 0.902 40 H 0.147 0.853 41 H 0.084 0.916 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.455 -5.516 13.283 19.026 hybrid contribution 0.987 0.139 -0.303 1.042 sum -11.468 -5.377 12.980 18.136 Atomic orbital electron populations 1.21724 0.92829 1.02908 1.02250 1.21484 0.97072 0.98964 0.94835 0.93046 1.21563 0.94343 1.01580 0.97005 1.21984 0.96904 1.00522 0.97515 1.22032 0.97716 0.98377 0.83917 1.47352 1.06915 1.64247 1.17632 1.16057 0.81428 0.79429 0.83216 1.90845 1.73634 1.48955 1.36551 1.42089 1.04902 1.55310 1.28700 1.16774 0.90509 1.09468 0.88494 1.20529 0.98994 1.00111 0.90742 1.21064 0.96638 1.06793 0.98453 1.17889 0.91763 0.90667 0.92104 1.19715 0.92438 1.30758 1.09079 0.90286 1.26749 0.99355 0.92933 0.99244 1.69808 1.13928 1.32477 1.29938 0.85079 0.77173 0.78799 0.77916 1.18721 1.19325 1.18423 1.21103 1.00446 1.04171 0.91469 1.20477 0.94610 1.05605 0.85182 1.98239 1.89187 1.97201 1.21354 1.21662 0.77077 1.01336 0.99089 0.91119 0.91287 0.93119 0.90384 0.90070 0.93198 0.88167 0.88798 0.90877 0.75371 0.86214 0.87323 0.90210 0.85288 0.91591 0.89806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.20 71.98 0.66 -1.17 16 2 C -0.10 -1.82 2.87 -10.71 -0.03 -1.85 16 3 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 4 C -0.11 -1.38 5.16 30.62 0.16 -1.22 16 5 C -0.13 -1.95 6.10 30.82 0.19 -1.76 16 6 C 0.10 1.89 6.37 86.51 0.55 2.44 16 7 N -0.62 -16.63 2.97 -836.06 -2.48 -19.11 16 8 C 0.70 25.76 8.14 179.05 1.46 27.22 16 9 O -0.62 -27.97 13.14 -3.98 -0.05 -28.02 16 10 N -0.66 -24.54 4.88 -316.69 -1.54 -26.08 16 11 C 0.04 1.95 6.32 38.58 0.24 2.20 16 12 C -0.08 -4.05 8.62 22.13 0.19 -3.86 16 13 C -0.21 -10.68 9.74 22.48 0.22 -10.46 16 14 C 0.08 4.27 5.55 -21.28 -0.12 4.15 16 15 C -0.49 -26.20 9.02 23.39 0.21 -25.99 16 16 H 0.08 4.07 7.85 -2.91 -0.02 4.05 16 17 C 0.03 1.51 5.42 85.23 0.46 1.97 16 18 N -0.83 -42.99 10.59 21.82 0.23 -42.76 16 19 Si 0.99 38.20 29.56 68.60 2.03 40.22 16 20 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 21 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 22 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 23 C -0.15 -7.93 8.38 22.50 0.19 -7.74 16 24 C -0.03 -1.40 6.30 22.18 0.14 -1.26 16 25 Cl -0.09 -3.36 27.92 -2.72 -0.08 -3.43 16 26 C 0.13 2.96 5.72 86.36 0.49 3.46 16 27 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.07 1.43 5.74 -2.39 -0.01 1.41 16 36 H 0.41 12.74 5.65 -92.71 -0.52 12.22 16 37 H 0.12 5.79 6.17 -2.91 -0.02 5.77 16 38 H 0.11 5.22 8.06 -2.91 -0.02 5.20 16 39 H 0.29 13.45 8.30 -92.71 -0.77 12.68 16 40 H 0.13 7.09 6.13 -2.91 -0.02 7.07 16 41 H 0.07 1.88 7.00 -2.39 -0.02 1.86 16 42 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -64.23 349.58 3.64 -60.58 By element: Atomic # 1 Polarization: 31.94 SS G_CDS: 0.52 Total: 32.46 kcal Atomic # 6 Polarization: -18.88 SS G_CDS: 5.02 Total: -13.86 kcal Atomic # 7 Polarization: -84.16 SS G_CDS: -3.79 Total: -87.95 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -0.05 Total: -28.02 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 2.03 Total: 40.22 kcal Atomic # 17 Polarization: -3.36 SS G_CDS: -0.08 Total: -3.43 kcal Total: -64.23 3.64 -60.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334732091.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.188 kcal (2) G-P(sol) polarization free energy of solvation -64.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds