Wall clock time and date at job start Sat Apr 11 2020 00:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 C 1.38419 * 119.84141 * 2 1 4 4 C 1.37893 * 120.18291 * 179.97438 * 3 2 1 5 5 C 1.39627 * 119.86279 * 0.02562 * 4 3 2 6 6 C 1.47773 * 120.15185 * 179.97438 * 5 4 3 7 7 O 1.21563 * 119.99803 * 134.99206 * 6 5 4 8 8 N 1.34777 * 120.00124 * 314.98700 * 6 5 4 9 9 C 1.47016 * 125.64976 * 354.72010 * 8 6 5 10 10 C 1.54367 * 107.29307 * 181.12993 * 9 8 6 11 11 C 1.55156 * 102.91663 * 22.13424 * 10 9 8 12 12 H 1.09000 * 111.00168 * 82.64484 * 11 10 9 13 13 C 1.53007 * 111.00454 * 206.45495 * 11 10 9 14 14 N 1.46494 * 109.47088 * 181.82139 * 13 11 10 15 15 C 1.36936 * 119.99901 * 179.97438 * 14 13 11 16 16 H 1.07995 * 120.00043 * 0.02562 * 15 14 13 17 17 C 1.38814 * 120.00102 * 180.02562 * 15 14 13 18 18 N 1.31621 * 120.00173 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 120.00114 * 359.97438 * 17 15 14 20 20 H 1.48494 * 109.47538 * 270.00292 * 19 17 15 21 21 H 1.48505 * 109.46826 * 30.00133 * 19 17 15 22 22 H 1.48501 * 109.47262 * 150.00143 * 19 17 15 23 23 C 1.47429 * 125.64752 * 174.76077 * 8 6 5 24 24 C 1.39691 * 119.69323 * 0.25997 * 5 4 3 25 25 Cl 1.73600 * 120.09676 * 179.74127 * 24 5 4 26 26 C 1.38155 * 119.81299 * 359.46356 * 24 5 4 27 27 H 1.09000 * 109.46855 * 89.99549 * 1 2 3 28 28 H 1.08999 * 109.47246 * 209.99777 * 1 2 3 29 29 H 1.09000 * 109.47024 * 330.00016 * 1 2 3 30 30 H 1.07996 * 119.90630 * 359.97438 * 3 2 1 31 31 H 1.07998 * 120.06858 * 180.02562 * 4 3 2 32 32 H 1.09007 * 109.88367 * 300.51427 * 9 8 6 33 33 H 1.08995 * 109.88342 * 61.51699 * 9 8 6 34 34 H 1.09000 * 110.70210 * 263.79498 * 10 9 8 35 35 H 1.08995 * 110.75864 * 140.50464 * 10 9 8 36 36 H 1.08995 * 109.46914 * 61.82220 * 13 11 10 37 37 H 1.08999 * 109.46721 * 301.82432 * 13 11 10 38 38 H 0.97001 * 120.00179 * 0.02562 * 14 13 11 39 39 H 0.97002 * 120.00297 * 179.97438 * 18 17 15 40 40 H 1.09002 * 110.36574 * 36.99957 * 23 8 6 41 41 H 1.08994 * 110.45640 * 274.72349 * 23 8 6 42 42 H 1.08002 * 119.94060 * 180.28190 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1959 1.2007 0.0000 4 6 3.5748 1.2089 0.0005 5 6 4.2772 0.0022 0.0005 6 6 5.7550 0.0035 0.0005 7 8 6.3634 -0.7403 0.7451 8 7 6.4281 0.8293 -0.8250 9 6 5.8256 1.6961 -1.8482 10 6 6.9788 2.4331 -2.5622 11 6 8.2006 1.5185 -2.2829 12 1 8.2386 0.6904 -2.9906 13 6 9.5035 2.3202 -2.3108 14 7 10.6364 1.4187 -2.0868 15 6 11.9128 1.9144 -2.0697 16 1 12.0842 2.9698 -2.2210 17 6 12.9863 1.0602 -1.8580 18 7 14.2131 1.5366 -1.8411 19 14 12.6897 -0.7654 -1.5956 20 1 12.5098 -1.0345 -0.1464 21 1 11.4678 -1.1790 -2.3313 22 1 13.8556 -1.5339 -2.1007 23 6 7.8908 1.0123 -0.8520 24 6 3.5766 -1.2063 -0.0055 25 17 4.4394 -2.7127 -0.0124 26 6 2.1951 -1.1994 -0.0002 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6518 2.1335 -0.0004 31 1 4.1103 2.1467 0.0010 32 1 5.2717 1.0917 -2.5667 33 1 5.1571 2.4165 -1.3769 34 1 7.1304 3.4220 -2.1296 35 1 6.7873 2.5046 -3.6328 36 1 9.4811 3.0773 -1.5270 37 1 9.6111 2.8048 -3.2812 38 1 10.4824 0.4707 -1.9513 39 1 14.9632 0.9398 -1.6927 40 1 8.3952 0.0638 -0.6676 41 1 8.1957 1.7533 -0.1131 42 1 1.6514 -2.1326 -0.0003 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752953186.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:41:39 Heat of formation + Delta-G solvation = -22.203845 kcal Electronic energy + Delta-G solvation = -24377.202699 eV Core-core repulsion = 20768.314256 eV Total energy + Delta-G solvation = -3608.888443 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.119 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.59346 -40.02886 -38.76344 -37.56056 -36.60964 -34.35856 -33.65961 -32.31684 -31.87256 -30.20325 -28.77061 -27.02770 -25.05043 -23.90552 -23.45968 -22.76367 -21.59253 -20.82743 -19.67537 -18.60402 -17.65050 -17.08171 -16.78424 -16.74383 -16.50669 -15.77105 -15.59381 -15.18478 -15.05446 -14.89168 -14.85934 -14.50636 -14.16968 -13.91321 -13.73852 -13.65271 -13.49949 -13.12363 -13.07219 -12.88790 -12.84824 -12.33470 -12.31598 -12.26913 -12.06211 -11.95682 -11.87191 -11.75651 -11.61322 -11.07000 -10.99733 -10.00849 -9.80878 -9.65016 -9.31496 -8.05932 -5.38007 -0.27161 0.12201 1.04064 1.33270 1.36573 1.41584 1.53821 1.84480 2.43737 2.52855 3.21862 3.26665 3.49038 3.60571 3.68049 3.77821 3.85972 4.00101 4.15413 4.18907 4.26084 4.33150 4.39070 4.51134 4.58992 4.67538 4.78893 4.82904 4.85300 4.88531 4.95060 5.01648 5.06362 5.12877 5.16589 5.24376 5.25370 5.39511 5.43686 5.73107 5.74255 6.18814 6.38356 6.96171 7.05203 7.82598 7.98622 9.15532 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.020790 B = 0.003000 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.500340 B = 9331.164077 C =10368.072086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.047 4.047 3 C -0.112 4.112 4 C -0.070 4.070 5 C -0.145 4.145 6 C 0.563 3.437 7 O -0.569 6.569 8 N -0.611 5.611 9 C 0.095 3.905 10 C -0.111 4.111 11 C -0.102 4.102 12 H 0.080 0.920 13 C 0.166 3.834 14 N -0.763 5.763 15 C -0.229 4.229 16 H 0.065 0.935 17 C -0.060 4.060 18 N -0.981 5.981 19 Si 0.945 3.055 20 H -0.285 1.285 21 H -0.257 1.257 22 H -0.292 1.292 23 C 0.113 3.887 24 C -0.010 4.010 25 Cl -0.074 7.074 26 C -0.123 4.123 27 H 0.091 0.909 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.172 0.828 31 H 0.156 0.844 32 H 0.079 0.921 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.110 0.890 36 H 0.034 0.966 37 H 0.041 0.959 38 H 0.362 0.638 39 H 0.258 0.742 40 H 0.045 0.955 41 H 0.069 0.931 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.975 0.635 0.257 36.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.047 4.047 3 C -0.130 4.130 4 C -0.088 4.088 5 C -0.149 4.149 6 C 0.352 3.648 7 O -0.449 6.449 8 N -0.344 5.344 9 C -0.026 4.026 10 C -0.149 4.149 11 C -0.121 4.121 12 H 0.098 0.902 13 C 0.040 3.960 14 N -0.408 5.408 15 C -0.360 4.360 16 H 0.083 0.917 17 C -0.252 4.252 18 N -0.632 5.632 19 Si 0.773 3.227 20 H -0.212 1.212 21 H -0.182 1.182 22 H -0.219 1.219 23 C -0.009 4.009 24 C -0.037 4.037 25 Cl -0.045 7.045 26 C -0.141 4.141 27 H 0.109 0.891 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.189 0.811 31 H 0.174 0.826 32 H 0.098 0.902 33 H 0.120 0.880 34 H 0.114 0.886 35 H 0.128 0.872 36 H 0.052 0.948 37 H 0.059 0.941 38 H 0.195 0.805 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -36.477 0.236 0.669 36.483 hybrid contribution 1.307 -1.672 0.416 2.162 sum -35.170 -1.436 1.085 35.216 Atomic orbital electron populations 1.20966 0.87617 1.04617 1.04117 1.20480 0.98332 0.91596 0.94334 1.21506 0.92884 0.99546 0.99040 1.21569 0.95249 0.95991 0.96010 1.19665 0.91625 0.94481 1.09149 1.18346 0.87760 0.78986 0.79702 1.90813 1.70587 1.41098 1.42390 1.48506 1.07687 1.42056 1.36148 1.22495 0.96839 0.93417 0.89824 1.22687 0.90739 0.98572 1.02862 1.22477 0.95451 0.99334 0.94879 0.90179 1.20767 0.84210 0.92035 0.98945 1.42835 1.02786 1.06703 1.88521 1.19070 0.83442 0.94131 1.39335 0.91713 1.25394 0.94952 1.01906 1.02936 1.69854 0.98556 1.35856 1.58902 0.85560 0.77445 0.81673 0.78014 1.21206 1.18215 1.21855 1.22203 0.80058 1.00351 0.98317 1.21186 0.93342 0.86090 1.03112 1.98406 1.77676 1.31796 1.96631 1.21159 0.90179 1.00730 1.02062 0.89091 0.90491 0.89200 0.81066 0.82644 0.90234 0.88040 0.88600 0.87195 0.94839 0.94068 0.80545 0.93337 0.93618 0.91265 0.83043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.38 10.00 71.24 0.71 0.33 16 2 C -0.05 -0.46 5.89 -19.81 -0.12 -0.58 16 3 C -0.11 -1.00 9.68 22.23 0.22 -0.78 16 4 C -0.07 -0.99 8.43 22.52 0.19 -0.80 16 5 C -0.15 -3.32 5.38 -20.07 -0.11 -3.43 16 6 C 0.56 17.17 6.98 86.77 0.61 17.78 16 7 O -0.57 -22.77 15.85 -3.91 -0.06 -22.83 16 8 N -0.61 -16.13 3.33 -815.20 -2.71 -18.84 16 9 C 0.10 1.55 5.93 86.74 0.51 2.07 16 10 C -0.11 -1.85 6.42 31.80 0.20 -1.64 16 11 C -0.10 -2.79 3.07 -9.40 -0.03 -2.82 16 12 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 13 C 0.17 5.91 5.71 86.38 0.49 6.40 16 14 N -0.76 -36.09 5.30 -343.46 -1.82 -37.91 16 15 C -0.23 -13.21 10.47 84.03 0.88 -12.32 16 16 H 0.06 4.01 8.06 -2.91 -0.02 3.99 16 17 C -0.06 -3.64 5.50 84.86 0.47 -3.18 16 18 N -0.98 -64.02 13.97 21.65 0.30 -63.72 16 19 Si 0.94 48.05 27.74 68.60 1.90 49.96 16 20 H -0.29 -14.55 7.11 99.48 0.71 -13.85 16 21 H -0.26 -12.06 6.52 99.48 0.65 -11.41 16 22 H -0.29 -14.83 7.11 99.48 0.71 -14.13 16 23 C 0.11 3.55 6.26 86.85 0.54 4.10 16 24 C -0.01 -0.22 6.34 22.60 0.14 -0.08 16 25 Cl -0.07 -2.03 27.03 -2.72 -0.07 -2.10 16 26 C -0.12 -1.85 9.47 22.26 0.21 -1.64 16 27 H 0.09 0.14 8.14 -2.39 -0.02 0.12 16 28 H 0.08 0.22 8.08 -2.39 -0.02 0.20 16 29 H 0.09 0.05 8.08 -2.39 -0.02 0.03 16 30 H 0.17 0.31 8.06 -2.91 -0.02 0.29 16 31 H 0.16 1.60 6.19 -2.91 -0.02 1.58 16 32 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.10 1.05 5.75 -2.39 -0.01 1.03 16 34 H 0.10 1.40 8.04 -2.39 -0.02 1.38 16 35 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.03 1.19 8.03 -2.39 -0.02 1.17 16 37 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.36 17.00 5.49 -92.71 -0.51 16.49 16 39 H 0.26 16.07 8.31 -92.71 -0.77 15.30 16 40 H 0.05 1.73 7.99 -2.39 -0.02 1.71 16 41 H 0.07 2.23 7.95 -2.39 -0.02 2.22 16 42 H 0.15 1.77 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -80.95 358.26 2.93 -78.02 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: 0.47 Total: 14.03 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: 4.93 Total: 3.40 kcal Atomic # 7 Polarization: -116.25 SS G_CDS: -4.23 Total: -120.47 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.06 Total: -22.83 kcal Atomic # 14 Polarization: 48.05 SS G_CDS: 1.90 Total: 49.96 kcal Atomic # 17 Polarization: -2.03 SS G_CDS: -0.07 Total: -2.10 kcal Total: -80.95 2.93 -78.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752953186.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.817 kcal (2) G-P(sol) polarization free energy of solvation -80.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds