Wall clock time and date at job start Sat Apr 11 2020 00:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38316 * 119.93445 * 2 1 4 4 C 1.38380 * 120.31557 * 180.02562 * 3 2 1 5 5 C 1.37949 * 120.18023 * 359.95901 * 4 3 2 6 6 C 1.39583 * 119.86417 * 0.02562 * 5 4 3 7 7 C 1.47770 * 120.15091 * 180.02562 * 6 5 4 8 8 O 1.21565 * 120.00413 * 134.93301 * 7 6 5 9 9 N 1.34780 * 119.99908 * 314.92644 * 7 6 5 10 10 C 1.47016 * 125.65078 * 354.80913 * 9 7 6 11 11 C 1.54323 * 107.27491 * 181.02169 * 10 9 7 12 12 C 1.55158 * 102.94059 * 22.19073 * 11 10 9 13 13 H 1.09000 * 111.03843 * 82.58636 * 12 11 10 14 14 C 1.53004 * 111.00596 * 206.42729 * 12 11 10 15 15 N 1.46500 * 109.47200 * 178.65276 * 14 12 11 16 16 C 1.36929 * 119.99931 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00027 * 359.97438 * 16 15 14 18 18 C 1.38815 * 120.00059 * 179.97438 * 16 15 14 19 19 N 1.31619 * 120.00032 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00143 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47206 * 179.97438 * 20 18 16 22 22 H 1.48499 * 109.46947 * 300.00244 * 20 18 16 23 23 H 1.48506 * 109.46997 * 59.99949 * 20 18 16 24 24 C 1.47424 * 125.64556 * 174.76159 * 9 7 6 25 25 C 1.38110 * 119.93504 * 180.27788 * 2 1 3 26 26 Cl 1.73604 * 120.09234 * 359.97438 * 25 2 1 27 27 H 1.09008 * 109.47027 * 90.00124 * 1 2 3 28 28 H 1.08993 * 109.47416 * 209.99566 * 1 2 3 29 29 H 1.08998 * 109.47191 * 330.00744 * 1 2 3 30 30 H 1.07999 * 119.84294 * 0.02562 * 3 2 1 31 31 H 1.07995 * 119.91163 * 179.97438 * 4 3 2 32 32 H 1.08003 * 120.06453 * 180.02562 * 5 4 3 33 33 H 1.09003 * 109.88119 * 300.43805 * 10 9 7 34 34 H 1.08995 * 109.88351 * 61.44891 * 10 9 7 35 35 H 1.09001 * 110.72130 * 263.83296 * 11 10 9 36 36 H 1.08991 * 110.72287 * 140.55350 * 11 10 9 37 37 H 1.08997 * 109.47090 * 58.64767 * 14 12 11 38 38 H 1.09004 * 109.46846 * 298.64831 * 14 12 11 39 39 H 0.97001 * 120.00066 * 359.97438 * 15 14 12 40 40 H 0.97005 * 119.99403 * 0.02562 * 19 18 16 41 41 H 1.09004 * 110.36834 * 37.07172 * 24 9 7 42 42 H 1.09000 * 110.46291 * 274.79736 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1986 0.0000 4 6 3.5809 1.2078 -0.0005 5 6 4.2824 0.0200 -0.0002 6 6 3.5934 -1.1940 0.0001 7 6 4.3384 -2.4702 0.0010 8 8 4.0025 -3.3696 0.7466 9 7 5.3904 -2.6370 -0.8249 10 6 5.8366 -1.6802 -1.8481 11 6 7.0544 -2.3057 -2.5603 12 6 6.8788 -3.8220 -2.2818 13 1 6.1827 -4.2718 -2.9898 14 6 8.2273 -4.5443 -2.3089 15 7 8.0266 -5.9646 -2.0109 16 6 9.0987 -6.8158 -1.9797 17 1 10.0923 -6.4402 -2.1752 18 6 8.9086 -8.1614 -1.6968 19 7 7.6978 -8.6191 -1.4580 20 14 10.3711 -9.3228 -1.6549 21 1 9.9045 -10.6950 -1.3319 22 1 11.0389 -9.3259 -2.9813 23 1 11.3328 -8.8705 -0.6176 24 6 6.2847 -3.8087 -0.8512 25 6 2.1962 -1.1968 -0.0058 26 17 1.3288 -2.7007 -0.0124 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5137 29 1 -0.3633 0.8900 0.5137 30 1 1.6535 2.1318 0.0004 31 1 4.1132 2.1475 -0.0009 32 1 5.3623 0.0293 -0.0002 33 1 5.0359 -1.5060 -2.5670 34 1 6.1225 -0.7400 -1.3768 35 1 7.9849 -1.9393 -2.1267 36 1 7.0208 -2.1038 -3.6308 37 1 8.8892 -4.1063 -1.5619 38 1 8.6754 -4.4403 -3.2971 39 1 7.1342 -6.3020 -1.8357 40 1 6.9383 -8.0160 -1.4802 41 1 5.7189 -4.7220 -0.6669 42 1 7.0781 -3.6991 -0.1119 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752954018.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:41:47 Heat of formation + Delta-G solvation = -1.789683 kcal Electronic energy + Delta-G solvation = -24445.392327 eV Core-core repulsion = 20837.389108 eV Total energy + Delta-G solvation = -3608.003219 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.119 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.62075 -39.15832 -37.53777 -36.61270 -34.93216 -33.46274 -32.30846 -31.25602 -30.30201 -28.69047 -27.34736 -25.73167 -24.01268 -22.99353 -22.36149 -21.91988 -20.16338 -19.58349 -17.58789 -17.14776 -16.89262 -16.59334 -15.82563 -15.66964 -14.86651 -14.53731 -14.44151 -14.30047 -13.93539 -13.75548 -13.56263 -13.27273 -13.00073 -12.79766 -12.74019 -12.55070 -12.36127 -12.03230 -11.93586 -11.77490 -11.66999 -11.06268 -10.95282 -10.83728 -10.69364 -10.55270 -10.39880 -9.95421 -9.88712 -9.26410 -9.14462 -9.01129 -8.87062 -8.60174 -6.99322 -6.07397 -3.07870 0.51118 0.76611 1.91298 2.58483 2.87441 3.29332 3.53464 3.57491 3.75198 4.15755 4.26253 4.43222 4.56727 4.62111 4.73102 4.75129 4.84075 4.90669 5.04113 5.18330 5.23124 5.25028 5.30424 5.37954 5.53591 5.64401 5.68700 5.71892 5.79877 5.83331 5.87964 5.91324 5.94521 5.96052 6.17792 6.24792 6.29329 6.37858 6.60520 6.73510 7.46920 7.81984 8.09690 8.78493 9.24905 10.11326 10.25662 11.40990 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.022876 B = 0.002759 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.721385 B =10144.504307 C =11012.210065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.083 4.083 3 C -0.093 4.093 4 C -0.117 4.117 5 C -0.086 4.086 6 C -0.109 4.109 7 C 0.568 3.432 8 O -0.512 6.512 9 N -0.612 5.612 10 C 0.098 3.902 11 C -0.124 4.124 12 C -0.107 4.107 13 H 0.084 0.916 14 C 0.171 3.829 15 N -0.744 5.744 16 C -0.334 4.334 17 H 0.064 0.936 18 C -0.045 4.045 19 N -0.942 5.942 20 Si 1.081 2.919 21 H -0.285 1.285 22 H -0.295 1.295 23 H -0.295 1.295 24 C 0.117 3.883 25 C 0.003 3.997 26 Cl -0.040 7.040 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.135 0.865 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.023 0.977 38 H 0.025 0.975 39 H 0.367 0.633 40 H 0.255 0.745 41 H 0.082 0.918 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.073 25.820 0.092 28.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.084 4.084 3 C -0.111 4.111 4 C -0.135 4.135 5 C -0.104 4.104 6 C -0.113 4.113 7 C 0.355 3.645 8 O -0.388 6.388 9 N -0.346 5.346 10 C -0.025 4.025 11 C -0.163 4.163 12 C -0.127 4.127 13 H 0.102 0.898 14 C 0.043 3.957 15 N -0.390 5.390 16 C -0.465 4.465 17 H 0.082 0.918 18 C -0.243 4.243 19 N -0.587 5.587 20 Si 0.911 3.089 21 H -0.210 1.210 22 H -0.223 1.223 23 H -0.223 1.223 24 C -0.005 4.005 25 C -0.025 4.025 26 Cl -0.011 7.011 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.153 0.847 31 H 0.153 0.847 32 H 0.156 0.844 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.041 0.959 38 H 0.043 0.957 39 H 0.201 0.799 40 H 0.067 0.933 41 H 0.101 0.899 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.704 23.677 0.760 26.423 hybrid contribution -0.668 1.524 -0.261 1.685 sum -12.372 25.202 0.499 28.079 Atomic orbital electron populations 1.20891 0.89795 1.03770 1.03165 1.19762 0.97063 0.91075 1.00479 1.21169 0.94261 0.97133 0.98542 1.21178 0.94188 0.98186 0.99937 1.21366 1.00487 0.90723 0.97851 1.19813 0.92146 0.94464 1.04846 1.17733 0.79399 0.86749 0.80613 1.90865 1.65988 1.41915 1.40008 1.48438 1.29065 1.21433 1.35696 1.22198 0.97323 0.92541 0.90414 1.22651 0.97321 0.95386 1.00905 1.22612 0.99361 0.94811 0.95911 0.89800 1.20516 0.91914 0.85382 0.97867 1.42376 1.07169 1.03133 1.86344 1.20001 0.88372 0.92087 1.46067 0.91758 1.25796 1.02935 0.95639 0.99902 1.70878 0.98417 1.37327 1.52101 0.83238 0.73607 0.76217 0.75799 1.21021 1.22280 1.22266 1.22335 0.92384 0.88307 0.97443 1.20859 0.91000 0.88189 1.02470 1.98412 1.75787 1.30603 1.96276 0.90431 0.90580 0.90831 0.84722 0.84718 0.84389 0.91492 0.91294 0.90140 0.89849 0.95937 0.95713 0.79926 0.93325 0.89933 0.90819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 9.61 36.00 0.35 -0.48 16 2 C -0.08 -0.76 5.88 -104.64 -0.62 -1.37 16 3 C -0.09 -0.66 9.69 -39.50 -0.38 -1.04 16 4 C -0.12 -0.83 10.03 -39.63 -0.40 -1.22 16 5 C -0.09 -0.80 8.43 -39.19 -0.33 -1.13 16 6 C -0.11 -1.38 5.38 -104.94 -0.56 -1.95 16 7 C 0.57 9.08 6.98 -12.36 -0.09 8.99 16 8 O -0.51 -10.20 15.86 5.31 0.08 -10.12 16 9 N -0.61 -8.92 3.33 -171.66 -0.57 -9.49 16 10 C 0.10 1.05 5.93 -3.07 -0.02 1.03 16 11 C -0.12 -1.38 6.42 -24.90 -0.16 -1.54 16 12 C -0.11 -1.68 3.11 -88.47 -0.27 -1.95 16 13 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 14 C 0.17 3.36 5.71 -4.04 -0.02 3.33 16 15 N -0.74 -18.93 5.45 -59.91 -0.33 -19.25 16 16 C -0.33 -9.58 9.99 -15.06 -0.15 -9.73 16 17 H 0.06 1.80 7.83 -52.49 -0.41 1.39 16 18 C -0.04 -1.33 5.50 -17.43 -0.10 -1.43 16 19 N -0.94 -29.90 13.70 55.49 0.76 -29.14 16 20 Si 1.08 26.36 29.92 -169.99 -5.09 21.27 16 21 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.30 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.30 -6.87 7.11 56.52 0.40 -6.47 16 24 C 0.12 1.97 6.11 -2.53 -0.02 1.95 16 25 C 0.00 0.03 6.33 -39.07 -0.25 -0.22 16 26 Cl -0.04 -0.55 25.37 -51.86 -1.32 -1.87 16 27 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 28 H 0.08 0.59 6.91 -51.93 -0.36 0.23 16 29 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 30 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 31 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 32 H 0.14 1.09 6.18 -52.48 -0.32 0.77 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.57 5.74 -51.93 -0.30 0.28 16 35 H 0.08 0.84 8.04 -51.93 -0.42 0.42 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.02 0.45 8.10 -51.93 -0.42 0.03 16 38 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.37 9.67 6.37 -40.82 -0.26 9.41 16 40 H 0.26 8.03 6.77 -40.82 -0.28 7.75 16 41 H 0.08 1.63 7.99 -51.93 -0.41 1.21 16 42 H 0.07 1.29 8.00 -51.93 -0.42 0.88 16 LS Contribution 356.86 15.07 5.38 5.38 Total: -1.00 -35.41 356.86 -9.86 -45.27 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -5.77 Total: 4.69 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -3.02 Total: -6.75 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: -0.14 Total: -57.88 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.08 Total: -10.12 kcal Atomic # 14 Polarization: 26.36 SS G_CDS: -5.09 Total: 21.27 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.32 Total: -1.87 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.41 -9.86 -45.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752954018.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.481 kcal (2) G-P(sol) polarization free energy of solvation -35.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds