Wall clock time and date at job start Sat Apr 11 2020 00:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38316 * 119.93445 * 2 1 4 4 C 1.38380 * 120.31557 * 180.02562 * 3 2 1 5 5 C 1.37949 * 120.18023 * 359.95901 * 4 3 2 6 6 C 1.39583 * 119.86417 * 0.02562 * 5 4 3 7 7 C 1.47770 * 120.15091 * 180.02562 * 6 5 4 8 8 O 1.21565 * 120.00413 * 134.93301 * 7 6 5 9 9 N 1.34780 * 119.99908 * 314.92644 * 7 6 5 10 10 C 1.47016 * 125.65078 * 354.80913 * 9 7 6 11 11 C 1.54323 * 107.27491 * 181.02169 * 10 9 7 12 12 C 1.55158 * 102.94059 * 22.19073 * 11 10 9 13 13 H 1.09000 * 111.03843 * 82.58636 * 12 11 10 14 14 C 1.53004 * 111.00596 * 206.42729 * 12 11 10 15 15 N 1.46500 * 109.47200 * 178.65276 * 14 12 11 16 16 C 1.36929 * 119.99931 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00027 * 359.97438 * 16 15 14 18 18 C 1.38815 * 120.00059 * 179.97438 * 16 15 14 19 19 N 1.31619 * 120.00032 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00143 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47206 * 179.97438 * 20 18 16 22 22 H 1.48499 * 109.46947 * 300.00244 * 20 18 16 23 23 H 1.48506 * 109.46997 * 59.99949 * 20 18 16 24 24 C 1.47424 * 125.64556 * 174.76159 * 9 7 6 25 25 C 1.38110 * 119.93504 * 180.27788 * 2 1 3 26 26 Cl 1.73604 * 120.09234 * 359.97438 * 25 2 1 27 27 H 1.09008 * 109.47027 * 90.00124 * 1 2 3 28 28 H 1.08993 * 109.47416 * 209.99566 * 1 2 3 29 29 H 1.08998 * 109.47191 * 330.00744 * 1 2 3 30 30 H 1.07999 * 119.84294 * 0.02562 * 3 2 1 31 31 H 1.07995 * 119.91163 * 179.97438 * 4 3 2 32 32 H 1.08003 * 120.06453 * 180.02562 * 5 4 3 33 33 H 1.09003 * 109.88119 * 300.43805 * 10 9 7 34 34 H 1.08995 * 109.88351 * 61.44891 * 10 9 7 35 35 H 1.09001 * 110.72130 * 263.83296 * 11 10 9 36 36 H 1.08991 * 110.72287 * 140.55350 * 11 10 9 37 37 H 1.08997 * 109.47090 * 58.64767 * 14 12 11 38 38 H 1.09004 * 109.46846 * 298.64831 * 14 12 11 39 39 H 0.97001 * 120.00066 * 359.97438 * 15 14 12 40 40 H 0.97005 * 119.99403 * 0.02562 * 19 18 16 41 41 H 1.09004 * 110.36834 * 37.07172 * 24 9 7 42 42 H 1.09000 * 110.46291 * 274.79736 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1986 0.0000 4 6 3.5809 1.2078 -0.0005 5 6 4.2824 0.0200 -0.0002 6 6 3.5934 -1.1940 0.0001 7 6 4.3384 -2.4702 0.0010 8 8 4.0025 -3.3696 0.7466 9 7 5.3904 -2.6370 -0.8249 10 6 5.8366 -1.6802 -1.8481 11 6 7.0544 -2.3057 -2.5603 12 6 6.8788 -3.8220 -2.2818 13 1 6.1827 -4.2718 -2.9898 14 6 8.2273 -4.5443 -2.3089 15 7 8.0266 -5.9646 -2.0109 16 6 9.0987 -6.8158 -1.9797 17 1 10.0923 -6.4402 -2.1752 18 6 8.9086 -8.1614 -1.6968 19 7 7.6978 -8.6191 -1.4580 20 14 10.3711 -9.3228 -1.6549 21 1 9.9045 -10.6950 -1.3319 22 1 11.0389 -9.3259 -2.9813 23 1 11.3328 -8.8705 -0.6176 24 6 6.2847 -3.8087 -0.8512 25 6 2.1962 -1.1968 -0.0058 26 17 1.3288 -2.7007 -0.0124 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5137 29 1 -0.3633 0.8900 0.5137 30 1 1.6535 2.1318 0.0004 31 1 4.1132 2.1475 -0.0009 32 1 5.3623 0.0293 -0.0002 33 1 5.0359 -1.5060 -2.5670 34 1 6.1225 -0.7400 -1.3768 35 1 7.9849 -1.9393 -2.1267 36 1 7.0208 -2.1038 -3.6308 37 1 8.8892 -4.1063 -1.5619 38 1 8.6754 -4.4403 -3.2971 39 1 7.1342 -6.3020 -1.8357 40 1 6.9383 -8.0160 -1.4802 41 1 5.7189 -4.7220 -0.6669 42 1 7.0781 -3.6991 -0.1119 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752954018.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:41:46 Heat of formation + Delta-G solvation = -24.630225 kcal Electronic energy + Delta-G solvation = -24446.382768 eV Core-core repulsion = 20837.389108 eV Total energy + Delta-G solvation = -3608.993659 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.119 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.63862 -40.06468 -38.80258 -37.51812 -36.77231 -34.46476 -33.66684 -32.23302 -31.65559 -30.03458 -28.03734 -27.15862 -25.61046 -24.35336 -23.45312 -22.73947 -21.49964 -20.64420 -19.36721 -18.43263 -17.87400 -17.54179 -16.94378 -16.79637 -16.19167 -15.84730 -15.73716 -15.30586 -15.15783 -15.13116 -14.84619 -14.39516 -14.18844 -13.96459 -13.61191 -13.38065 -13.34586 -13.14915 -12.84324 -12.74027 -12.59706 -12.56872 -12.49404 -12.20070 -12.00723 -11.87889 -11.85754 -11.69116 -11.25247 -11.08157 -10.94463 -10.02913 -9.76647 -9.72352 -9.14404 -8.42456 -5.36628 -0.25859 0.10123 1.06333 1.50300 1.56612 1.67693 1.79683 1.83762 2.53911 2.70518 3.18414 3.38172 3.48490 3.55323 3.63195 3.76281 3.90497 3.99415 4.10064 4.15352 4.24489 4.32726 4.38275 4.47286 4.54970 4.57101 4.68753 4.74214 4.75205 4.79547 4.89179 4.96342 5.04501 5.09900 5.16672 5.19643 5.25800 5.31449 5.33387 5.56318 5.73280 6.33595 6.44891 6.91452 7.05964 7.96014 8.08104 9.09170 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.022876 B = 0.002759 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.721385 B =10144.504307 C =11012.210065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.087 4.087 3 C -0.080 4.080 4 C -0.102 4.102 5 C -0.085 4.085 6 C -0.135 4.135 7 C 0.561 3.439 8 O -0.570 6.570 9 N -0.611 5.611 10 C 0.096 3.904 11 C -0.110 4.110 12 C -0.099 4.099 13 H 0.072 0.928 14 C 0.170 3.830 15 N -0.761 5.761 16 C -0.334 4.334 17 H 0.072 0.928 18 C -0.110 4.110 19 N -0.977 5.977 20 Si 1.131 2.869 21 H -0.296 1.296 22 H -0.273 1.273 23 H -0.276 1.276 24 C 0.121 3.879 25 C -0.023 4.023 26 Cl -0.073 7.073 27 H 0.086 0.914 28 H 0.059 0.941 29 H 0.099 0.901 30 H 0.174 0.826 31 H 0.176 0.824 32 H 0.153 0.847 33 H 0.080 0.920 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.110 0.890 37 H 0.028 0.972 38 H 0.035 0.965 39 H 0.357 0.643 40 H 0.241 0.759 41 H 0.037 0.963 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.999 30.491 -0.957 32.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.088 4.088 3 C -0.098 4.098 4 C -0.120 4.120 5 C -0.103 4.103 6 C -0.138 4.138 7 C 0.350 3.650 8 O -0.450 6.450 9 N -0.344 5.344 10 C -0.025 4.025 11 C -0.148 4.148 12 C -0.119 4.119 13 H 0.091 0.909 14 C 0.044 3.956 15 N -0.406 5.406 16 C -0.465 4.465 17 H 0.090 0.910 18 C -0.300 4.300 19 N -0.626 5.626 20 Si 0.955 3.045 21 H -0.222 1.222 22 H -0.199 1.199 23 H -0.202 1.202 24 C -0.002 4.002 25 C -0.051 4.051 26 Cl -0.044 7.044 27 H 0.104 0.896 28 H 0.078 0.922 29 H 0.118 0.882 30 H 0.192 0.808 31 H 0.194 0.806 32 H 0.171 0.829 33 H 0.098 0.902 34 H 0.122 0.878 35 H 0.114 0.886 36 H 0.129 0.871 37 H 0.045 0.955 38 H 0.053 0.947 39 H 0.189 0.811 40 H 0.051 0.949 41 H 0.056 0.944 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.604 28.444 -0.335 30.358 hybrid contribution -1.012 0.248 0.063 1.044 sum -11.616 28.692 -0.271 30.955 Atomic orbital electron populations 1.20950 0.88530 1.04287 1.03859 1.20107 0.98180 0.90680 0.99854 1.21682 0.94646 0.97533 0.95899 1.21650 0.94296 0.98691 0.97329 1.21589 1.01298 0.90110 0.97307 1.19671 0.92199 0.93790 1.08183 1.18437 0.79271 0.87578 0.79685 1.90819 1.67557 1.44207 1.42378 1.48515 1.28415 1.21249 1.36209 1.22495 0.97452 0.92747 0.89820 1.22685 0.98275 0.90880 1.02915 1.22431 0.96769 0.98048 0.94613 0.90919 1.20704 0.94295 0.82664 0.97978 1.42675 1.06065 1.05411 1.86432 1.20426 0.89446 0.92680 1.43945 0.90965 1.27341 1.04465 0.98142 1.00089 1.71002 0.99093 1.37309 1.55147 0.82611 0.71070 0.73599 0.77270 1.22180 1.19878 1.20226 1.22057 0.92001 0.87904 0.98204 1.21134 0.91037 0.88013 1.04880 1.98392 1.76400 1.33034 1.96609 0.89589 0.92199 0.88184 0.80820 0.80635 0.82921 0.90199 0.87790 0.88565 0.87123 0.95451 0.94739 0.81135 0.94905 0.94405 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.44 9.61 71.23 0.68 -0.75 16 2 C -0.09 -1.41 5.88 -19.88 -0.12 -1.53 16 3 C -0.08 -0.75 9.69 22.32 0.22 -0.54 16 4 C -0.10 -0.91 10.03 22.23 0.22 -0.69 16 5 C -0.08 -1.31 8.43 22.53 0.19 -1.12 16 6 C -0.13 -3.35 5.38 -20.07 -0.11 -3.46 16 7 C 0.56 18.75 6.98 86.76 0.61 19.35 16 8 O -0.57 -24.75 15.86 -3.92 -0.06 -24.81 16 9 N -0.61 -18.06 3.33 -815.27 -2.71 -20.78 16 10 C 0.10 1.79 5.93 86.73 0.51 2.31 16 11 C -0.11 -2.11 6.42 31.78 0.20 -1.91 16 12 C -0.10 -3.10 3.11 -9.40 -0.03 -3.12 16 13 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 14 C 0.17 6.64 5.71 86.38 0.49 7.13 16 15 N -0.76 -39.89 5.45 -343.45 -1.87 -41.76 16 16 C -0.33 -19.33 9.99 84.04 0.84 -18.49 16 17 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 18 C -0.11 -6.62 5.50 84.86 0.47 -6.16 16 19 N -0.98 -64.43 13.70 21.65 0.30 -64.14 16 20 Si 1.13 53.41 29.92 68.60 2.05 55.47 16 21 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 23 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 24 C 0.12 4.33 6.11 86.86 0.53 4.86 16 25 C -0.02 -0.56 6.33 22.60 0.14 -0.42 16 26 Cl -0.07 -2.17 25.37 -2.72 -0.07 -2.24 16 27 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 28 H 0.06 0.93 6.91 -2.39 -0.02 0.91 16 29 H 0.10 0.64 8.08 -2.39 -0.02 0.63 16 30 H 0.17 0.33 8.06 -2.91 -0.02 0.31 16 31 H 0.18 0.22 8.06 -2.91 -0.02 0.20 16 32 H 0.15 1.80 6.18 -2.91 -0.02 1.79 16 33 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.10 1.27 5.74 -2.39 -0.01 1.26 16 35 H 0.10 1.61 8.04 -2.39 -0.02 1.60 16 36 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.03 1.06 8.10 -2.39 -0.02 1.04 16 38 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 39 H 0.36 19.97 6.37 -92.71 -0.59 19.38 16 40 H 0.24 16.02 6.77 -92.70 -0.63 15.40 16 41 H 0.04 1.66 7.99 -2.38 -0.02 1.64 16 42 H 0.06 2.34 8.00 -2.39 -0.02 2.32 16 Total: -1.00 -84.07 356.86 3.08 -80.99 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 0.59 Total: 21.79 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: 4.86 Total: -4.52 kcal Atomic # 7 Polarization: -122.39 SS G_CDS: -4.29 Total: -126.68 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.06 Total: -24.81 kcal Atomic # 14 Polarization: 53.41 SS G_CDS: 2.05 Total: 55.47 kcal Atomic # 17 Polarization: -2.17 SS G_CDS: -0.07 Total: -2.24 kcal Total: -84.07 3.08 -80.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752954018.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.355 kcal (2) G-P(sol) polarization free energy of solvation -84.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds