Wall clock time and date at job start Sat Apr 11 2020 00:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38369 * 119.91710 * 2 1 4 4 C 1.38445 * 120.28129 * 180.02562 * 3 2 1 5 5 Cl 1.73596 * 119.94269 * 180.02562 * 4 3 2 6 6 C 1.38102 * 120.11439 * 359.70308 * 4 3 2 7 7 C 1.39542 * 119.84237 * 0.53014 * 6 4 3 8 8 C 1.47847 * 120.14154 * 179.77063 * 7 6 4 9 9 O 1.21550 * 120.00096 * 157.43342 * 8 7 6 10 10 N 1.34778 * 119.99842 * 337.43988 * 8 7 6 11 11 C 1.47428 * 125.64971 * 3.35569 * 10 8 7 12 12 C 1.54906 * 104.83437 * 204.09870 * 11 10 8 13 13 C 1.55160 * 101.58178 * 322.99472 * 12 11 10 14 14 C 1.47020 * 125.64734 * 183.32708 * 10 8 7 15 15 H 1.09001 * 109.88788 * 59.39512 * 14 10 8 16 16 C 1.53009 * 109.87842 * 298.38506 * 14 10 8 17 17 N 1.46501 * 109.46864 * 73.96813 * 16 14 10 18 18 C 1.36936 * 119.99720 * 187.41946 * 17 16 14 19 19 H 1.08002 * 120.00197 * 359.97438 * 18 17 16 20 20 C 1.38811 * 119.99687 * 179.97438 * 18 17 16 21 21 N 1.31619 * 120.00560 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99793 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47227 * 180.02562 * 22 20 18 24 24 H 1.48502 * 109.47022 * 299.99654 * 22 20 18 25 25 H 1.48497 * 109.47467 * 59.99763 * 22 20 18 26 26 C 1.37940 * 119.92701 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.46915 * 270.01593 * 1 2 3 28 28 H 1.08994 * 109.47277 * 30.01910 * 1 2 3 29 29 H 1.09007 * 109.46856 * 150.02263 * 1 2 3 30 30 H 1.08003 * 119.85660 * 0.02562 * 3 2 1 31 31 H 1.08002 * 120.07884 * 180.27276 * 6 4 3 32 32 H 1.09003 * 110.36586 * 322.93768 * 11 10 8 33 33 H 1.08997 * 110.36101 * 85.25677 * 11 10 8 34 34 H 1.09002 * 111.00327 * 81.06490 * 12 11 10 35 35 H 1.08991 * 111.00662 * 204.92125 * 12 11 10 36 36 H 1.09008 * 110.71812 * 277.14299 * 13 12 11 37 37 H 1.08991 * 110.72422 * 153.86689 * 13 12 11 38 38 H 1.08993 * 109.46896 * 313.96609 * 16 14 10 39 39 H 1.08997 * 109.47246 * 193.96691 * 16 14 10 40 40 H 0.96995 * 120.00233 * 7.41922 * 17 16 14 41 41 H 0.96995 * 120.00098 * 179.97438 * 21 20 18 42 42 H 1.08003 * 120.05779 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1993 0.0000 4 6 3.5815 1.2081 -0.0005 5 17 4.4384 2.7178 0.0001 6 6 4.2820 0.0179 0.0051 7 6 3.5911 -1.1944 0.0002 8 6 4.3344 -2.4725 0.0011 9 8 3.7980 -3.4872 0.4011 10 7 5.6068 -2.5123 -0.4416 11 6 6.3986 -1.3510 -0.8864 12 6 7.4718 -1.9423 -1.8342 13 6 7.8011 -3.2862 -1.1321 14 6 6.4353 -3.7211 -0.5601 15 1 5.9583 -4.4329 -1.2339 16 6 6.6271 -4.3576 0.8180 17 7 5.3843 -5.0154 1.2293 18 6 5.2659 -5.5252 2.4947 19 1 6.0888 -5.4427 3.1893 20 6 4.0882 -6.1479 2.8845 21 7 3.0855 -6.2489 2.0379 22 14 3.9263 -6.8428 4.6109 23 1 2.5820 -7.4521 4.7753 24 1 4.9684 -7.8784 4.8274 25 1 4.1000 -5.7509 5.6023 26 6 2.1952 -1.1955 0.0005 27 1 -0.3633 0.0003 1.0277 28 1 -0.3633 0.8898 -0.5141 29 1 -0.3633 -0.8903 -0.5135 30 1 1.6534 2.1325 0.0004 31 1 5.3620 0.0255 0.0091 32 1 5.7662 -0.6440 -1.4235 33 1 6.8720 -0.8655 -0.0331 34 1 7.0627 -2.1119 -2.8302 35 1 8.3506 -1.2992 -1.8788 36 1 8.5244 -3.1354 -0.3306 37 1 8.1683 -4.0176 -1.8519 38 1 6.8863 -3.5852 1.5420 39 1 7.4292 -5.0941 0.7696 40 1 4.6455 -5.0897 0.6053 41 1 2.2627 -6.6844 2.3103 42 1 1.6549 -2.1307 0.0014 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754613010.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:42:04 Heat of formation + Delta-G solvation = 27.185025 kcal Electronic energy + Delta-G solvation = -25422.373031 eV Core-core repulsion = 21815.626250 eV Total energy + Delta-G solvation = -3606.746781 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.119 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.41147 -38.89886 -37.01048 -36.51428 -34.34831 -33.11342 -31.40237 -31.17136 -30.60419 -28.80554 -27.05862 -25.17995 -24.21685 -22.74717 -21.91616 -21.25263 -20.92235 -18.86646 -17.31230 -16.53013 -16.42325 -16.28057 -15.70093 -15.04892 -14.60457 -14.34002 -14.17474 -13.81770 -13.57020 -13.40574 -13.15046 -12.88957 -12.87447 -12.80943 -12.45788 -12.42084 -11.88592 -11.66391 -11.50760 -11.45258 -11.26851 -11.16877 -11.10659 -10.76656 -10.65877 -10.58866 -10.45841 -9.94361 -9.52202 -9.01051 -8.85309 -8.73130 -8.63746 -8.13897 -6.54922 -5.44506 -2.71362 0.85711 1.09783 1.95675 3.08894 3.27963 3.57107 3.60740 3.61978 3.87948 4.47909 4.51959 4.63771 4.76812 4.88190 4.93219 4.98687 5.12347 5.18564 5.22269 5.34965 5.43502 5.51447 5.52324 5.60288 5.68927 5.75911 5.81606 5.87097 5.91645 5.99402 6.01261 6.08666 6.23718 6.26272 6.36404 6.48091 6.63702 6.69370 6.85462 7.02434 7.89622 7.94963 8.64388 8.85577 9.86086 10.51815 10.92253 11.76369 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.011052 B = 0.004591 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.855652 B = 6096.822474 C = 7759.906066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.081 4.081 3 C -0.099 4.099 4 C -0.040 4.040 5 Cl -0.074 7.074 6 C -0.109 4.109 7 C -0.093 4.093 8 C 0.547 3.453 9 O -0.442 6.442 10 N -0.612 5.612 11 C 0.089 3.911 12 C -0.133 4.133 13 C -0.124 4.124 14 C 0.131 3.869 15 H 0.075 0.925 16 C 0.145 3.855 17 N -0.719 5.719 18 C -0.236 4.236 19 H 0.059 0.941 20 C -0.009 4.009 21 N -0.916 5.916 22 Si 0.896 3.104 23 H -0.293 1.293 24 H -0.289 1.289 25 H -0.290 1.290 26 C -0.058 4.058 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.133 0.867 31 H 0.153 0.847 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.018 0.982 39 H 0.017 0.983 40 H 0.400 0.600 41 H 0.249 0.751 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.822 18.466 -10.802 21.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.082 4.082 3 C -0.118 4.118 4 C -0.067 4.067 5 Cl -0.045 7.045 6 C -0.128 4.128 7 C -0.097 4.097 8 C 0.333 3.667 9 O -0.311 6.311 10 N -0.349 5.349 11 C -0.034 4.034 12 C -0.172 4.172 13 C -0.163 4.163 14 C 0.028 3.972 15 H 0.093 0.907 16 C 0.015 3.985 17 N -0.371 5.371 18 C -0.368 4.368 19 H 0.077 0.923 20 C -0.206 4.206 21 N -0.564 5.564 22 Si 0.728 3.272 23 H -0.219 1.219 24 H -0.216 1.216 25 H -0.217 1.217 26 C -0.077 4.077 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.151 0.849 31 H 0.170 0.830 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.036 0.964 39 H 0.035 0.965 40 H 0.242 0.758 41 H 0.059 0.941 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.463 17.950 -10.397 20.889 hybrid contribution -0.116 -0.089 1.007 1.018 sum 2.347 17.861 -9.390 20.314 Atomic orbital electron populations 1.20806 0.90063 1.03145 1.02964 1.19820 0.96672 0.91953 0.99730 1.21033 0.91903 0.98630 1.00216 1.20738 0.92441 0.86831 1.06658 1.98360 1.77371 1.31716 1.97097 1.21938 1.01761 0.90088 0.99006 1.20021 0.94219 0.92920 1.02544 1.17888 0.80790 0.88605 0.79436 1.91007 1.66017 1.32984 1.41058 1.48303 1.11903 1.08406 1.66305 1.22683 0.93461 0.89901 0.97353 1.22798 0.98492 0.97117 0.98745 1.22638 0.96451 0.97003 1.00171 1.21910 0.89804 0.86710 0.98749 0.90737 1.20987 0.91627 0.94378 0.91474 1.42893 1.12878 1.67303 1.14062 1.19091 0.98268 1.29196 0.90272 0.92253 1.24648 0.96499 1.02172 0.97246 1.69731 1.04378 1.48455 1.33876 0.86447 0.76521 0.78769 0.85485 1.21879 1.21615 1.21723 1.21352 0.92718 0.98814 0.94783 0.90613 0.91363 0.90811 0.84928 0.83013 0.90168 0.91417 0.90656 0.90070 0.90332 0.90110 0.96406 0.96530 0.75767 0.94143 0.83809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.01 36.01 0.36 -0.70 16 2 C -0.08 -0.99 5.87 -104.68 -0.61 -1.60 16 3 C -0.10 -1.11 9.47 -39.46 -0.37 -1.49 16 4 C -0.04 -0.48 6.31 -39.55 -0.25 -0.73 16 5 Cl -0.07 -0.77 28.95 -51.86 -1.50 -2.27 16 6 C -0.11 -1.45 7.79 -39.15 -0.30 -1.76 16 7 C -0.09 -1.51 5.77 -104.97 -0.61 -2.11 16 8 C 0.55 10.70 7.51 -12.33 -0.09 10.61 16 9 O -0.44 -11.08 12.63 5.32 0.07 -11.01 16 10 N -0.61 -10.11 3.06 -164.11 -0.50 -10.61 16 11 C 0.09 1.04 4.99 -2.53 -0.01 1.02 16 12 C -0.13 -1.27 7.09 -24.58 -0.17 -1.45 16 13 C -0.12 -1.46 6.45 -24.89 -0.16 -1.62 16 14 C 0.13 2.24 3.09 -66.95 -0.21 2.03 16 15 H 0.07 1.38 8.13 -51.93 -0.42 0.96 16 16 C 0.14 3.13 5.62 -4.04 -0.02 3.11 16 17 N -0.72 -19.92 4.14 -59.91 -0.25 -20.17 16 18 C -0.24 -7.18 9.99 -15.06 -0.15 -7.33 16 19 H 0.06 1.75 7.83 -52.49 -0.41 1.34 16 20 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 21 N -0.92 -29.65 13.06 55.49 0.72 -28.92 16 22 Si 0.90 23.87 29.55 -169.99 -5.02 18.84 16 23 H -0.29 -7.80 7.11 56.52 0.40 -7.40 16 24 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 25 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 26 C -0.06 -0.88 9.24 -39.18 -0.36 -1.24 16 27 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 29 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 30 H 0.13 1.18 8.06 -52.48 -0.42 0.75 16 31 H 0.15 1.81 4.13 -52.49 -0.22 1.59 16 32 H 0.08 0.84 5.91 -51.93 -0.31 0.53 16 33 H 0.07 0.74 7.39 -51.93 -0.38 0.36 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.89 7.85 -51.92 -0.41 0.48 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.02 0.36 8.11 -51.93 -0.42 -0.06 16 40 H 0.40 11.79 4.92 -40.82 -0.20 11.59 16 41 H 0.25 7.80 8.31 -40.82 -0.34 7.46 16 42 H 0.14 2.36 7.81 -52.48 -0.41 1.95 16 LS Contribution 352.74 15.07 5.32 5.32 Total: -1.00 -35.95 352.74 -9.93 -45.87 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -5.69 Total: 6.59 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -3.07 Total: -3.64 kcal Atomic # 7 Polarization: -59.68 SS G_CDS: -0.03 Total: -59.71 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.07 Total: -11.01 kcal Atomic # 14 Polarization: 23.87 SS G_CDS: -5.02 Total: 18.84 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.50 Total: -2.27 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.95 -9.93 -45.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754613010.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.058 kcal (2) G-P(sol) polarization free energy of solvation -35.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds