Wall clock time and date at job start Sat Apr 11 2020 00:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38369 * 119.91710 * 2 1 4 4 C 1.38445 * 120.28129 * 180.02562 * 3 2 1 5 5 Cl 1.73596 * 119.94269 * 180.02562 * 4 3 2 6 6 C 1.38102 * 120.11439 * 359.70308 * 4 3 2 7 7 C 1.39542 * 119.84237 * 0.53014 * 6 4 3 8 8 C 1.47847 * 120.14154 * 179.77063 * 7 6 4 9 9 O 1.21550 * 120.00096 * 157.43342 * 8 7 6 10 10 N 1.34778 * 119.99842 * 337.43988 * 8 7 6 11 11 C 1.47428 * 125.64971 * 3.35569 * 10 8 7 12 12 C 1.54906 * 104.83437 * 204.09870 * 11 10 8 13 13 C 1.55160 * 101.58178 * 322.99472 * 12 11 10 14 14 C 1.47020 * 125.64734 * 183.32708 * 10 8 7 15 15 H 1.09001 * 109.88788 * 59.39512 * 14 10 8 16 16 C 1.53009 * 109.87842 * 298.38506 * 14 10 8 17 17 N 1.46501 * 109.46864 * 73.96813 * 16 14 10 18 18 C 1.36936 * 119.99720 * 187.41946 * 17 16 14 19 19 H 1.08002 * 120.00197 * 359.97438 * 18 17 16 20 20 C 1.38811 * 119.99687 * 179.97438 * 18 17 16 21 21 N 1.31619 * 120.00560 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99793 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47227 * 180.02562 * 22 20 18 24 24 H 1.48502 * 109.47022 * 299.99654 * 22 20 18 25 25 H 1.48497 * 109.47467 * 59.99763 * 22 20 18 26 26 C 1.37940 * 119.92701 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.46915 * 270.01593 * 1 2 3 28 28 H 1.08994 * 109.47277 * 30.01910 * 1 2 3 29 29 H 1.09007 * 109.46856 * 150.02263 * 1 2 3 30 30 H 1.08003 * 119.85660 * 0.02562 * 3 2 1 31 31 H 1.08002 * 120.07884 * 180.27276 * 6 4 3 32 32 H 1.09003 * 110.36586 * 322.93768 * 11 10 8 33 33 H 1.08997 * 110.36101 * 85.25677 * 11 10 8 34 34 H 1.09002 * 111.00327 * 81.06490 * 12 11 10 35 35 H 1.08991 * 111.00662 * 204.92125 * 12 11 10 36 36 H 1.09008 * 110.71812 * 277.14299 * 13 12 11 37 37 H 1.08991 * 110.72422 * 153.86689 * 13 12 11 38 38 H 1.08993 * 109.46896 * 313.96609 * 16 14 10 39 39 H 1.08997 * 109.47246 * 193.96691 * 16 14 10 40 40 H 0.96995 * 120.00233 * 7.41922 * 17 16 14 41 41 H 0.96995 * 120.00098 * 179.97438 * 21 20 18 42 42 H 1.08003 * 120.05779 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1993 0.0000 4 6 3.5815 1.2081 -0.0005 5 17 4.4384 2.7178 0.0001 6 6 4.2820 0.0179 0.0051 7 6 3.5911 -1.1944 0.0002 8 6 4.3344 -2.4725 0.0011 9 8 3.7980 -3.4872 0.4011 10 7 5.6068 -2.5123 -0.4416 11 6 6.3986 -1.3510 -0.8864 12 6 7.4718 -1.9423 -1.8342 13 6 7.8011 -3.2862 -1.1321 14 6 6.4353 -3.7211 -0.5601 15 1 5.9583 -4.4329 -1.2339 16 6 6.6271 -4.3576 0.8180 17 7 5.3843 -5.0154 1.2293 18 6 5.2659 -5.5252 2.4947 19 1 6.0888 -5.4427 3.1893 20 6 4.0882 -6.1479 2.8845 21 7 3.0855 -6.2489 2.0379 22 14 3.9263 -6.8428 4.6109 23 1 2.5820 -7.4521 4.7753 24 1 4.9684 -7.8784 4.8274 25 1 4.1000 -5.7509 5.6023 26 6 2.1952 -1.1955 0.0005 27 1 -0.3633 0.0003 1.0277 28 1 -0.3633 0.8898 -0.5141 29 1 -0.3633 -0.8903 -0.5135 30 1 1.6534 2.1325 0.0004 31 1 5.3620 0.0255 0.0091 32 1 5.7662 -0.6440 -1.4235 33 1 6.8720 -0.8655 -0.0331 34 1 7.0627 -2.1119 -2.8302 35 1 8.3506 -1.2992 -1.8788 36 1 8.5244 -3.1354 -0.3306 37 1 8.1683 -4.0176 -1.8519 38 1 6.8863 -3.5852 1.5420 39 1 7.4292 -5.0941 0.7696 40 1 4.6455 -5.0897 0.6053 41 1 2.2627 -6.6844 2.3103 42 1 1.6549 -2.1307 0.0014 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754613010.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:42:03 Heat of formation + Delta-G solvation = 4.434531 kcal Electronic energy + Delta-G solvation = -25423.359567 eV Core-core repulsion = 21815.626250 eV Total energy + Delta-G solvation = -3607.733317 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.119 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.65241 -40.00895 -38.34028 -37.48038 -36.27324 -34.32585 -33.15456 -32.44784 -31.70188 -30.39456 -28.02296 -26.74669 -25.66884 -24.36037 -23.13720 -22.48147 -21.99852 -20.23373 -19.19596 -17.93883 -17.63584 -17.40165 -16.89893 -16.57842 -16.20185 -15.67343 -15.42521 -15.18681 -14.87270 -14.79741 -14.60615 -14.32916 -13.97438 -13.72033 -13.71103 -13.36768 -13.23360 -13.10226 -12.92337 -12.73124 -12.59651 -12.55078 -12.30336 -12.24371 -12.06132 -12.00415 -11.66650 -11.60883 -11.49744 -10.88436 -10.59377 -9.96003 -9.74624 -9.53620 -8.77369 -7.79148 -5.06545 -0.23995 0.07304 1.01295 1.40690 1.45780 1.51531 1.85860 2.01437 2.59261 2.65342 3.40065 3.47964 3.56574 3.70256 3.77633 3.97147 4.02261 4.08780 4.18003 4.23285 4.24898 4.38016 4.43324 4.57631 4.63586 4.76064 4.79281 4.80797 4.83276 4.88150 5.00264 5.01037 5.13522 5.14546 5.15717 5.18091 5.37927 5.40523 5.48259 5.57908 5.67013 6.37596 6.61553 7.30056 7.51905 8.35667 8.63889 9.42374 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.011052 B = 0.004591 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.855652 B = 6096.822474 C = 7759.906066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.077 4.077 3 C -0.087 4.087 4 C -0.040 4.040 5 Cl -0.052 7.052 6 C -0.105 4.105 7 C -0.117 4.117 8 C 0.536 3.464 9 O -0.515 6.515 10 N -0.611 5.611 11 C 0.079 3.921 12 C -0.118 4.118 13 C -0.114 4.114 14 C 0.131 3.869 15 H 0.050 0.950 16 C 0.141 3.859 17 N -0.735 5.735 18 C -0.247 4.247 19 H 0.062 0.938 20 C -0.074 4.074 21 N -0.952 5.952 22 Si 0.967 3.033 23 H -0.294 1.294 24 H -0.276 1.276 25 H -0.284 1.284 26 C -0.082 4.082 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.068 0.932 30 H 0.167 0.833 31 H 0.166 0.834 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.119 0.881 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.010 0.990 39 H 0.025 0.975 40 H 0.389 0.611 41 H 0.243 0.757 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.391 21.720 -11.298 24.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.077 4.077 3 C -0.106 4.106 4 C -0.066 4.066 5 Cl -0.023 7.023 6 C -0.124 4.124 7 C -0.120 4.120 8 C 0.324 3.676 9 O -0.389 6.389 10 N -0.346 5.346 11 C -0.042 4.042 12 C -0.156 4.156 13 C -0.152 4.152 14 C 0.027 3.973 15 H 0.068 0.932 16 C 0.014 3.986 17 N -0.385 5.385 18 C -0.380 4.380 19 H 0.080 0.920 20 C -0.267 4.267 21 N -0.603 5.603 22 Si 0.796 3.204 23 H -0.220 1.220 24 H -0.202 1.202 25 H -0.211 1.211 26 C -0.101 4.101 27 H 0.099 0.901 28 H 0.116 0.884 29 H 0.087 0.913 30 H 0.184 0.816 31 H 0.183 0.817 32 H 0.113 0.887 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.137 0.863 36 H 0.106 0.894 37 H 0.118 0.882 38 H 0.028 0.972 39 H 0.043 0.957 40 H 0.229 0.771 41 H 0.052 0.948 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.122 21.259 -10.920 24.253 hybrid contribution -0.545 -0.974 1.117 1.579 sum 3.578 20.286 -9.803 22.813 Atomic orbital electron populations 1.20887 0.88025 1.04409 1.03619 1.20073 0.98117 0.91074 0.98444 1.21406 0.91828 0.99324 0.98001 1.20831 0.92937 0.87243 1.05609 1.98372 1.76995 1.29952 1.96931 1.21974 1.02379 0.89427 0.98582 1.19823 0.94400 0.92447 1.05343 1.18569 0.81579 0.89054 0.78351 1.90955 1.67820 1.35508 1.44662 1.48435 1.11326 1.09962 1.64884 1.23049 0.93861 0.88673 0.98616 1.22829 0.98944 0.95795 0.97996 1.22639 0.92867 0.98821 1.00867 1.21901 0.92926 0.86877 0.95608 0.93171 1.21190 0.89453 0.94036 0.93969 1.43147 1.14549 1.67704 1.13146 1.19520 0.98344 1.28596 0.91522 0.92001 1.25514 0.96299 1.03340 1.01510 1.69954 1.04697 1.49690 1.35914 0.85323 0.76473 0.78156 0.80434 1.22028 1.20189 1.21104 1.21308 0.92802 0.99142 0.96824 0.90144 0.88394 0.91297 0.81600 0.81651 0.88662 0.90051 0.89895 0.86253 0.89357 0.88245 0.97216 0.95718 0.77056 0.94847 0.86736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.98 10.01 71.24 0.71 -1.26 16 2 C -0.08 -1.82 5.87 -19.90 -0.12 -1.93 16 3 C -0.09 -1.73 9.47 22.35 0.21 -1.52 16 4 C -0.04 -0.85 6.31 22.29 0.14 -0.71 16 5 Cl -0.05 -0.90 28.95 -2.72 -0.08 -0.97 16 6 C -0.11 -2.68 7.79 22.55 0.18 -2.50 16 7 C -0.12 -3.92 5.77 -20.09 -0.12 -4.04 16 8 C 0.54 22.40 7.51 86.79 0.65 23.05 16 9 O -0.51 -28.21 12.63 -3.87 -0.05 -28.26 16 10 N -0.61 -20.60 3.06 -791.41 -2.43 -23.03 16 11 C 0.08 1.67 4.99 86.85 0.43 2.10 16 12 C -0.12 -1.81 7.09 31.99 0.23 -1.58 16 13 C -0.11 -2.41 6.45 31.78 0.21 -2.20 16 14 C 0.13 4.54 3.09 45.35 0.14 4.68 16 15 H 0.05 1.97 8.13 -2.39 -0.02 1.96 16 16 C 0.14 6.34 5.62 86.38 0.49 6.83 16 17 N -0.73 -42.94 4.14 -343.45 -1.42 -44.36 16 18 C -0.25 -15.61 9.99 84.03 0.84 -14.77 16 19 H 0.06 3.75 7.83 -2.91 -0.02 3.73 16 20 C -0.07 -4.72 5.50 84.86 0.47 -4.26 16 21 N -0.95 -64.87 13.06 21.65 0.28 -64.59 16 22 Si 0.97 50.70 29.55 68.60 2.03 52.73 16 23 H -0.29 -15.34 7.11 99.48 0.71 -14.63 16 24 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 25 H -0.28 -14.50 7.11 99.48 0.71 -13.79 16 26 C -0.08 -2.65 9.24 22.53 0.21 -2.44 16 27 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.10 1.13 8.08 -2.39 -0.02 1.12 16 29 H 0.07 1.27 8.08 -2.38 -0.02 1.25 16 30 H 0.17 2.20 8.06 -2.91 -0.02 2.18 16 31 H 0.17 3.61 4.13 -2.91 -0.01 3.60 16 32 H 0.10 1.76 5.91 -2.39 -0.01 1.75 16 33 H 0.08 1.54 7.39 -2.39 -0.02 1.52 16 34 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.09 1.74 7.85 -2.38 -0.02 1.72 16 37 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.01 0.45 8.14 -2.39 -0.02 0.44 16 39 H 0.03 1.08 8.11 -2.39 -0.02 1.06 16 40 H 0.39 24.60 4.92 -92.71 -0.46 24.14 16 41 H 0.24 16.01 8.31 -92.71 -0.77 15.24 16 42 H 0.11 4.29 7.81 -2.91 -0.02 4.27 16 Total: -1.00 -84.78 352.74 3.59 -81.19 By element: Atomic # 1 Polarization: 27.25 SS G_CDS: 0.59 Total: 27.84 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: 4.67 Total: -0.55 kcal Atomic # 7 Polarization: -128.41 SS G_CDS: -3.57 Total: -131.98 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -0.05 Total: -28.26 kcal Atomic # 14 Polarization: 50.70 SS G_CDS: 2.03 Total: 52.73 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -0.08 Total: -0.97 kcal Total: -84.78 3.59 -81.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754613010.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.627 kcal (2) G-P(sol) polarization free energy of solvation -84.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds