Wall clock time and date at job start Sat Apr 11 2020 00:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38355 * 119.91822 * 2 1 4 4 C 1.38447 * 120.27759 * 180.02562 * 3 2 1 5 5 Cl 1.73608 * 119.94294 * 180.02562 * 4 3 2 6 6 C 1.38101 * 120.12017 * 359.97438 * 4 3 2 7 7 C 1.39539 * 119.83580 * 359.97438 * 6 4 3 8 8 C 1.47847 * 120.13967 * 179.97438 * 7 6 4 9 9 O 1.21552 * 120.00241 * 180.02562 * 8 7 6 10 10 N 1.34779 * 119.99903 * 0.02562 * 8 7 6 11 11 C 1.46498 * 120.00061 * 180.02562 * 10 8 7 12 12 C 1.53776 * 113.61637 * 254.14006 * 11 10 8 13 13 C 1.54049 * 86.98713 * 270.83978 * 12 11 10 14 14 C 1.53002 * 113.62048 * 220.02070 * 13 12 11 15 15 N 1.46501 * 109.47239 * 272.49144 * 14 13 12 16 16 C 1.36935 * 119.99936 * 179.97438 * 15 14 13 17 17 H 1.07994 * 120.00008 * 359.97438 * 16 15 14 18 18 C 1.38816 * 119.99760 * 180.02562 * 16 15 14 19 19 N 1.31615 * 120.00261 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99654 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47418 * 59.99844 * 20 18 16 22 22 H 1.48505 * 109.46748 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47185 * 299.99377 * 20 18 16 24 24 C 1.53783 * 113.61626 * 156.53066 * 11 10 8 25 25 C 1.37944 * 119.91845 * 180.02562 * 2 1 3 26 26 H 1.09001 * 109.47075 * 269.98492 * 1 2 3 27 27 H 1.09002 * 109.47111 * 29.98151 * 1 2 3 28 28 H 1.08993 * 109.47262 * 149.98259 * 1 2 3 29 29 H 1.08008 * 119.86389 * 0.02562 * 3 2 1 30 30 H 1.07993 * 120.08663 * 179.97438 * 6 4 3 31 31 H 0.96997 * 120.00173 * 0.02562 * 10 8 7 32 32 H 1.09005 * 112.84978 * 25.33935 * 11 10 8 33 33 H 1.09007 * 113.61401 * 25.43286 * 12 11 10 34 34 H 1.09004 * 113.61588 * 156.33826 * 12 11 10 35 35 H 1.08997 * 113.69051 * 89.12694 * 13 12 11 36 36 H 1.09002 * 109.47126 * 32.49455 * 14 13 12 37 37 H 1.08997 * 109.47167 * 152.49094 * 14 13 12 38 38 H 0.96999 * 119.99761 * 0.02562 * 15 14 13 39 39 H 0.96993 * 120.00194 * 180.02562 * 19 18 16 40 40 H 1.08993 * 113.61586 * 203.66727 * 24 11 10 41 41 H 1.08998 * 113.61040 * 334.48909 * 24 11 10 42 42 H 1.07997 * 120.05481 * 0.25901 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1992 0.0000 4 6 3.5816 1.2079 -0.0005 5 17 4.4386 2.7176 0.0001 6 6 4.2820 0.0177 -0.0005 7 6 3.5910 -1.1946 0.0005 8 6 4.3342 -2.4727 0.0000 9 8 3.7297 -3.5273 0.0004 10 7 5.6820 -2.4685 -0.0011 11 6 6.4184 -3.7350 -0.0022 12 6 7.0620 -4.0746 1.3525 13 6 8.2986 -3.2936 0.8688 14 6 9.6266 -3.9486 1.2541 15 7 10.0308 -3.4873 2.5845 16 6 11.1955 -3.9426 3.1425 17 1 11.8158 -4.6421 2.6019 18 6 11.5782 -3.5059 4.4033 19 7 10.8219 -2.6538 5.0623 20 14 13.1674 -4.1265 5.1641 21 1 14.3113 -3.7550 4.2932 22 1 13.3469 -3.5133 6.5047 23 1 13.1076 -5.6042 5.2992 24 6 7.8449 -3.6176 -0.5644 25 6 2.1951 -1.1956 -0.0005 26 1 -0.3633 -0.0003 1.0277 27 1 -0.3633 0.8902 -0.5136 28 1 -0.3633 -0.8898 -0.5141 29 1 1.6535 2.1325 0.0004 30 1 5.3619 0.0251 -0.0014 31 1 6.1644 -1.6270 -0.0011 32 1 5.8460 -4.5571 -0.4320 33 1 6.5583 -3.6145 2.2028 34 1 7.2460 -5.1396 1.4938 35 1 8.2661 -2.2306 1.1074 36 1 9.5074 -5.0321 1.2659 37 1 10.3911 -3.6751 0.5269 38 1 9.4730 -2.8599 3.0705 39 1 11.0896 -2.3484 5.9431 40 1 8.2425 -4.5579 -0.9462 41 1 7.9726 -2.7897 -1.2618 42 1 1.6547 -2.1306 -0.0052 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755214330.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:42:07 Heat of formation + Delta-G solvation = 5.809698 kcal Electronic energy + Delta-G solvation = -23604.341203 eV Core-core repulsion = 19996.667518 eV Total energy + Delta-G solvation = -3607.673685 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.119 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.72533 -39.47037 -38.10930 -36.83737 -34.61203 -33.78108 -32.68993 -31.33994 -30.74948 -27.54304 -26.84832 -25.52255 -24.64050 -23.16705 -22.32330 -21.45419 -20.70374 -19.15988 -18.00360 -17.08262 -16.69053 -16.27339 -15.63305 -15.47562 -15.19730 -14.77393 -14.51382 -14.32739 -14.07359 -13.91361 -13.47982 -13.34535 -13.18687 -12.82210 -12.77828 -12.38968 -12.18284 -12.12655 -11.88885 -11.70362 -11.54842 -11.37229 -11.03011 -10.80583 -10.50577 -10.37206 -10.13262 -10.10811 -9.83484 -9.60733 -9.39504 -9.11432 -9.03920 -8.82860 -6.88919 -5.74276 -3.02546 0.35916 0.71312 1.69927 2.49029 2.91376 3.37994 3.45343 3.49462 3.50674 4.19128 4.22537 4.58835 4.61122 4.64263 4.71208 4.78219 4.79655 4.81700 5.09524 5.11630 5.16801 5.18206 5.28333 5.56210 5.59648 5.63392 5.69354 5.77698 5.84431 5.92620 5.96762 5.99765 6.10361 6.21843 6.24167 6.29850 6.42090 6.60485 6.79042 6.93543 7.33064 7.71258 8.01013 8.44948 9.55770 10.14982 10.49364 11.48660 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.014800 B = 0.002471 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.432561 B =11329.076604 C =12363.558292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.081 4.081 3 C -0.089 4.089 4 C -0.037 4.037 5 Cl -0.061 7.061 6 C -0.084 4.084 7 C -0.114 4.114 8 C 0.562 3.438 9 O -0.533 6.533 10 N -0.702 5.702 11 C 0.115 3.885 12 C -0.138 4.138 13 C -0.114 4.114 14 C 0.162 3.838 15 N -0.732 5.732 16 C -0.239 4.239 17 H 0.069 0.931 18 C -0.015 4.015 19 N -0.934 5.934 20 Si 0.907 3.093 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.137 4.137 25 C -0.057 4.057 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.138 0.862 30 H 0.138 0.862 31 H 0.401 0.599 32 H 0.101 0.899 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.020 0.980 37 H 0.018 0.982 38 H 0.383 0.617 39 H 0.255 0.745 40 H 0.096 0.904 41 H 0.069 0.931 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.958 8.428 -14.665 26.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.082 4.082 3 C -0.108 4.108 4 C -0.064 4.064 5 Cl -0.032 7.032 6 C -0.103 4.103 7 C -0.118 4.118 8 C 0.349 3.651 9 O -0.411 6.411 10 N -0.353 5.353 11 C 0.010 3.990 12 C -0.177 4.177 13 C -0.132 4.132 14 C 0.035 3.965 15 N -0.376 5.376 16 C -0.371 4.371 17 H 0.087 0.913 18 C -0.211 4.211 19 N -0.583 5.583 20 Si 0.738 3.262 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.176 4.176 25 C -0.076 4.076 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.156 0.844 30 H 0.156 0.844 31 H 0.237 0.763 32 H 0.119 0.881 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.106 0.894 36 H 0.038 0.962 37 H 0.036 0.964 38 H 0.217 0.783 39 H 0.065 0.935 40 H 0.115 0.885 41 H 0.088 0.912 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -21.134 7.705 -14.638 26.838 hybrid contribution 1.225 0.565 0.766 1.552 sum -19.909 8.270 -13.872 25.636 Atomic orbital electron populations 1.20827 0.89803 1.03431 1.03063 1.19859 0.96851 0.91930 0.99537 1.21146 0.91909 0.98945 0.98798 1.20773 0.92615 0.87436 1.05569 1.98402 1.77034 1.30860 1.96902 1.21222 1.00515 0.90222 0.98335 1.19904 0.94378 0.92514 1.04958 1.18087 0.82185 0.88463 0.76388 1.90780 1.68385 1.32232 1.49688 1.45618 1.05732 1.09692 1.74228 1.21990 0.92242 0.86137 0.98608 1.23464 0.96351 1.01478 0.96396 1.22818 0.95819 1.00124 0.94486 1.20635 0.91742 0.95742 0.88401 1.42340 1.25582 1.54454 1.15203 1.19198 0.98145 1.20940 0.98778 0.91291 1.24741 0.98956 0.99979 0.97413 1.69645 1.38674 1.35946 1.14045 0.86267 0.83351 0.78186 0.78384 1.21301 1.21703 1.21284 1.23312 0.94083 1.02893 0.97313 1.21281 0.92553 0.98753 0.95031 0.90480 0.91043 0.90820 0.84438 0.84399 0.76308 0.88128 0.91236 0.88965 0.89442 0.96190 0.96393 0.78336 0.93500 0.88536 0.91206 0.83900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.57 10.01 36.01 0.36 -0.21 16 2 C -0.08 -0.62 5.87 -104.68 -0.61 -1.24 16 3 C -0.09 -0.69 9.47 -39.46 -0.37 -1.06 16 4 C -0.04 -0.33 6.31 -39.55 -0.25 -0.58 16 5 Cl -0.06 -0.54 28.95 -51.86 -1.50 -2.04 16 6 C -0.08 -0.78 9.32 -39.15 -0.36 -1.15 16 7 C -0.11 -1.21 5.87 -104.97 -0.62 -1.83 16 8 C 0.56 7.21 7.77 -12.33 -0.10 7.11 16 9 O -0.53 -8.50 15.97 5.32 0.08 -8.42 16 10 N -0.70 -8.11 5.21 -53.96 -0.28 -8.40 16 11 C 0.12 1.44 4.29 -67.12 -0.29 1.16 16 12 C -0.14 -2.05 7.45 -25.78 -0.19 -2.25 16 13 C -0.11 -1.74 3.65 -89.66 -0.33 -2.07 16 14 C 0.16 3.22 6.10 -4.04 -0.02 3.20 16 15 N -0.73 -18.67 5.60 -59.91 -0.34 -19.00 16 16 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 17 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 18 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 19 N -0.93 -28.57 13.06 55.49 0.72 -27.85 16 20 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 C -0.14 -1.63 7.38 -25.92 -0.19 -1.82 16 25 C -0.06 -0.55 9.24 -39.18 -0.36 -0.91 16 26 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.07 0.27 8.08 -51.93 -0.42 -0.15 16 28 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 29 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 30 H 0.14 1.11 6.40 -52.49 -0.34 0.78 16 31 H 0.40 3.87 6.74 -40.82 -0.28 3.59 16 32 H 0.10 1.32 7.50 -51.93 -0.39 0.93 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.09 1.39 7.90 -51.93 -0.41 0.98 16 35 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.02 0.40 7.85 -51.93 -0.41 0.00 16 37 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.38 10.28 7.67 -40.82 -0.31 9.97 16 39 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 40 H 0.10 1.08 8.10 -51.93 -0.42 0.65 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.14 1.34 7.65 -52.49 -0.40 0.94 16 LS Contribution 368.79 15.07 5.56 5.56 Total: -1.00 -33.09 368.79 -10.24 -43.33 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -5.88 Total: 8.33 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -3.59 Total: -9.13 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: 0.11 Total: -55.25 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.08 Total: -8.42 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.50 Total: -2.04 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.09 -10.24 -43.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755214330.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.140 kcal (2) G-P(sol) polarization free energy of solvation -33.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds