Wall clock time and date at job start Sat Apr 11 2020 00:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99900 * 2 1 4 4 H 1.48499 * 109.47404 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46898 * 300.00069 * 3 2 1 6 6 H 1.48501 * 109.47314 * 59.99837 * 3 2 1 7 7 C 1.37877 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99790 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00121 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.46950 * 300.00048 * 9 7 2 11 11 O 1.45194 * 109.47310 * 179.97438 * 9 7 2 12 12 C 1.34230 * 116.99948 * 149.99807 * 11 9 7 13 13 O 1.20824 * 120.00085 * 0.02562 * 12 11 9 14 14 C 1.50707 * 119.99753 * 180.02562 * 12 11 9 15 15 H 1.08998 * 110.46610 * 302.56412 * 14 12 11 16 16 O 1.43928 * 110.41839 * 180.12914 * 14 12 11 17 17 C 1.43762 * 109.63953 * 215.17349 * 16 14 12 18 18 C 1.53675 * 106.82974 * 1.35131 * 17 16 14 19 19 H 1.09007 * 109.73488 * 267.25980 * 18 17 16 20 20 C 1.51234 * 112.32836 * 144.99234 * 18 17 16 21 21 O 1.42696 * 111.49428 * 294.98653 * 20 18 17 22 22 C 1.43198 * 112.75684 * 299.55801 * 21 20 18 23 23 C 1.53485 * 109.09460 * 64.62317 * 22 21 20 24 24 C 1.53098 * 110.07125 * 301.19764 * 23 22 21 25 25 H 1.09002 * 112.76798 * 282.42334 * 24 23 22 26 26 C 1.50699 * 109.47380 * 59.99354 * 9 7 2 27 27 C 1.34516 * 125.79301 * 265.00480 * 26 9 7 28 28 C 1.41385 * 106.84089 * 179.97438 * 27 26 9 29 29 C 1.34520 * 106.84148 * 359.97438 * 28 27 26 30 30 O 1.34302 * 108.41848 * 359.73924 * 29 28 27 31 31 H 0.97002 * 120.00455 * 359.97438 * 1 2 3 32 32 H 1.09005 * 109.98696 * 120.69375 * 17 16 14 33 33 H 1.09003 * 109.99062 * 242.00258 * 17 16 14 34 34 H 1.09001 * 109.07999 * 55.51216 * 20 18 17 35 35 H 1.09002 * 109.07452 * 174.54120 * 20 18 17 36 36 H 1.09002 * 109.64739 * 184.59629 * 22 21 20 37 37 H 1.08999 * 109.64225 * 305.02407 * 22 21 20 38 38 H 1.08996 * 110.14233 * 180.60321 * 23 22 21 39 39 H 1.08999 * 108.85151 * 60.97830 * 23 22 21 40 40 H 1.07996 * 126.57908 * 359.96550 * 27 26 9 41 41 H 1.07993 * 126.58066 * 179.97438 * 28 27 26 42 42 H 1.07994 * 125.78612 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 8 2.1946 -3.6027 0.0005 12 6 1.8034 -4.7390 0.5986 13 8 0.7086 -4.8092 1.1049 14 6 2.7297 -5.9270 0.6385 15 1 3.0173 -6.2202 -0.3712 16 8 2.1046 -7.0284 1.3224 17 6 3.0945 -7.7612 2.0640 18 6 4.4347 -7.0404 1.8497 19 1 4.9611 -7.4853 1.0051 20 6 5.3146 -7.0861 3.0790 21 8 4.7335 -6.3654 4.1649 22 6 4.5313 -4.9799 3.8651 23 6 3.5014 -4.8561 2.7339 24 6 3.9934 -5.6029 1.4913 25 1 4.7530 -5.0492 0.9395 26 6 0.3851 -2.5793 -1.2301 27 6 -0.9135 -2.2359 -1.3020 28 6 -1.3256 -2.4685 -2.6343 29 6 -0.2540 -2.9397 -3.2971 30 8 0.7808 -2.9989 -2.4431 31 1 -0.4851 0.8400 0.0004 32 1 2.8389 -7.7653 3.1236 33 1 3.1576 -8.7837 1.6917 34 1 5.4574 -8.1249 3.3766 35 1 6.2836 -6.6478 2.8399 36 1 4.1634 -4.4630 4.7515 37 1 5.4724 -4.5332 3.5446 38 1 3.3422 -3.8071 2.4843 39 1 2.5590 -5.2914 3.0663 40 1 -1.5242 -1.8556 -0.4966 41 1 -2.3115 -2.3003 -3.0417 42 1 -0.2289 -3.2182 -4.3402 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772395143.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:42:10 Heat of formation + Delta-G solvation = -153.180466 kcal Electronic energy + Delta-G solvation = -28623.020886 eV Core-core repulsion = 24535.450954 eV Total energy + Delta-G solvation = -4087.569932 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.134 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.37356 -41.04805 -39.20988 -37.58981 -35.65853 -33.43472 -33.07991 -32.01641 -31.69698 -29.88691 -28.82924 -26.67357 -25.63508 -24.11167 -23.46152 -22.59365 -20.67079 -20.12303 -19.68608 -19.23942 -17.40548 -17.02685 -16.70611 -16.51387 -16.36836 -15.89301 -15.54331 -15.32429 -15.13877 -14.82396 -14.64517 -14.45543 -13.66738 -13.33668 -13.02609 -12.89839 -12.61625 -12.47173 -12.28549 -11.93731 -11.83550 -11.69224 -11.57715 -11.30800 -11.15854 -11.08171 -10.98850 -10.74699 -10.40305 -10.36772 -10.14173 -9.97571 -9.62085 -9.46059 -9.37318 -8.85845 -8.66309 -7.26076 -6.24884 -4.44771 2.77747 2.83983 3.06697 3.17306 3.24949 3.29810 3.75133 3.89057 3.98217 4.09404 4.16710 4.23000 4.51066 4.67798 4.81628 4.85215 5.02415 5.10970 5.16721 5.32054 5.36328 5.36783 5.42440 5.49334 5.55108 5.68229 5.75207 5.83448 5.90805 6.04346 6.06987 6.28609 6.36121 6.66508 6.80780 6.98111 6.98750 7.14856 7.23070 7.35195 7.65214 7.70488 7.81477 8.34378 8.47577 8.74005 9.22506 10.72359 Molecular weight = 322.13amu Principal moments of inertia in cm(-1) A = 0.014384 B = 0.004513 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.088057 B = 6203.117741 C = 7579.214216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.069 3.931 3 Si 0.914 3.086 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.279 1.279 7 C -0.529 4.529 8 H 0.078 0.922 9 C 0.301 3.699 10 H 0.078 0.922 11 O -0.346 6.346 12 C 0.456 3.544 13 O -0.495 6.495 14 C 0.090 3.910 15 H 0.105 0.895 16 O -0.353 6.353 17 C 0.058 3.942 18 C -0.157 4.157 19 H 0.096 0.904 20 C 0.073 3.927 21 O -0.376 6.376 22 C 0.063 3.937 23 C -0.164 4.164 24 C -0.100 4.100 25 H 0.115 0.885 26 C 0.018 3.982 27 C -0.174 4.174 28 C -0.218 4.218 29 C -0.089 4.089 30 O -0.179 6.179 31 H 0.269 0.731 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.056 0.944 36 H 0.098 0.902 37 H 0.055 0.945 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.146 0.854 41 H 0.131 0.869 42 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.220 -11.391 2.321 14.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.136 4.136 3 Si 0.740 3.260 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.566 4.566 8 H 0.096 0.904 9 C 0.248 3.752 10 H 0.095 0.905 11 O -0.263 6.263 12 C 0.297 3.703 13 O -0.382 6.382 14 C 0.031 3.969 15 H 0.123 0.877 16 O -0.272 6.272 17 C -0.018 4.018 18 C -0.176 4.176 19 H 0.114 0.886 20 C -0.005 4.005 21 O -0.294 6.294 22 C -0.014 4.014 23 C -0.202 4.202 24 C -0.119 4.119 25 H 0.133 0.867 26 C -0.033 4.033 27 C -0.193 4.193 28 C -0.238 4.238 29 C -0.157 4.157 30 O -0.076 6.076 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.114 0.886 35 H 0.074 0.926 36 H 0.116 0.884 37 H 0.073 0.927 38 H 0.110 0.890 39 H 0.101 0.899 40 H 0.164 0.836 41 H 0.149 0.851 42 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 8.711 -11.473 2.581 14.635 hybrid contribution 0.032 1.306 -0.700 1.482 sum 8.744 -10.167 1.880 13.541 Atomic orbital electron populations 1.70037 1.05947 1.27590 1.46487 1.24943 0.95128 0.99556 0.94014 0.86184 0.79959 0.81991 0.77858 1.19294 1.20650 1.20522 1.20906 0.94119 0.87433 1.54177 0.90360 1.19202 0.85613 0.81546 0.88878 0.90468 1.86520 1.48492 1.21650 1.69597 1.22990 0.86610 0.84786 0.75886 1.90644 1.22091 1.82863 1.42586 1.22619 0.90571 0.85488 0.98216 0.87750 1.88685 1.32335 1.40641 1.65499 1.23150 0.86296 0.94919 0.97467 1.22762 0.98107 0.96235 1.00471 0.88623 1.21923 0.94570 0.97652 0.86306 1.88095 1.83018 1.21403 1.36904 1.22679 0.97880 0.82235 0.98561 1.22421 1.00563 1.02565 0.94629 1.22866 0.96356 0.95812 0.96824 0.86732 1.23564 0.94458 1.00056 0.85197 1.21298 0.95174 1.05799 0.97036 1.21724 0.99343 1.07072 0.95654 1.23603 0.86674 1.09632 0.95745 1.83978 1.37417 1.67118 1.19072 0.92140 0.90169 0.90820 0.88631 0.92579 0.88361 0.92665 0.89023 0.89938 0.83644 0.85129 0.79878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.53 10.48 55.43 0.58 -22.95 16 2 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 3 Si 0.91 20.43 29.54 -169.99 -5.02 15.40 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.53 -14.18 8.89 -34.44 -0.31 -14.49 16 8 H 0.08 2.05 7.81 -52.49 -0.41 1.63 16 9 C 0.30 7.84 2.41 -29.04 -0.07 7.77 16 10 H 0.08 2.17 7.16 -51.93 -0.37 1.80 16 11 O -0.35 -7.97 9.84 -42.01 -0.41 -8.38 16 12 C 0.46 9.63 5.54 36.01 0.20 9.83 16 13 O -0.49 -12.09 15.77 -25.29 -0.40 -12.48 16 14 C 0.09 1.44 3.64 -26.35 -0.10 1.34 16 15 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 16 O -0.35 -5.81 10.23 -54.53 -0.56 -6.37 16 17 C 0.06 0.68 6.83 37.51 0.26 0.94 16 18 C -0.16 -1.55 2.98 -90.33 -0.27 -1.82 16 19 H 0.10 0.74 8.14 -51.92 -0.42 0.31 16 20 C 0.07 0.64 6.12 36.27 0.22 0.87 16 21 O -0.38 -4.40 10.48 -35.23 -0.37 -4.77 16 22 C 0.06 0.72 6.81 37.41 0.25 0.98 16 23 C -0.16 -2.33 4.22 -26.43 -0.11 -2.44 16 24 C -0.10 -1.27 3.58 -88.21 -0.32 -1.59 16 25 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 26 C 0.02 0.47 5.67 -35.62 -0.20 0.27 16 27 C -0.17 -4.37 9.04 -39.70 -0.36 -4.73 16 28 C -0.22 -4.73 10.91 -39.70 -0.43 -5.16 16 29 C -0.09 -1.85 12.09 29.42 0.36 -1.49 16 30 O -0.18 -4.40 10.63 2.18 0.02 -4.37 16 31 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.08 0.98 7.62 -51.93 -0.40 0.59 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.43 8.13 -51.93 -0.42 0.00 16 36 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.06 0.55 8.12 -51.93 -0.42 0.13 16 38 H 0.09 1.46 7.77 -51.93 -0.40 1.06 16 39 H 0.08 1.37 6.99 -51.93 -0.36 1.01 16 40 H 0.15 3.77 7.49 -52.49 -0.39 3.38 16 41 H 0.13 2.40 8.06 -52.49 -0.42 1.97 16 42 H 0.18 2.87 8.06 -52.49 -0.42 2.45 16 LS Contribution 346.69 15.07 5.22 5.22 Total: -1.00 -32.21 346.69 -7.60 -39.81 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -5.70 Total: 6.87 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: -0.97 Total: -7.98 kcal Atomic # 7 Polarization: -23.53 SS G_CDS: 0.58 Total: -22.95 kcal Atomic # 8 Polarization: -34.66 SS G_CDS: -1.72 Total: -36.37 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.21 -7.60 -39.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772395143.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.369 kcal (2) G-P(sol) polarization free energy of solvation -32.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds