Wall clock time and date at job start Sat Apr 11 2020 00:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99900 * 2 1 4 4 H 1.48499 * 109.47404 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46898 * 300.00069 * 3 2 1 6 6 H 1.48501 * 109.47314 * 59.99837 * 3 2 1 7 7 C 1.37877 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99790 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00121 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.46950 * 300.00048 * 9 7 2 11 11 O 1.45194 * 109.47310 * 179.97438 * 9 7 2 12 12 C 1.34230 * 116.99948 * 149.99807 * 11 9 7 13 13 O 1.20824 * 120.00085 * 0.02562 * 12 11 9 14 14 C 1.50707 * 119.99753 * 180.02562 * 12 11 9 15 15 H 1.08998 * 110.46610 * 302.56412 * 14 12 11 16 16 O 1.43928 * 110.41839 * 180.12914 * 14 12 11 17 17 C 1.43762 * 109.63953 * 215.17349 * 16 14 12 18 18 C 1.53675 * 106.82974 * 1.35131 * 17 16 14 19 19 H 1.09007 * 109.73488 * 267.25980 * 18 17 16 20 20 C 1.51234 * 112.32836 * 144.99234 * 18 17 16 21 21 O 1.42696 * 111.49428 * 294.98653 * 20 18 17 22 22 C 1.43198 * 112.75684 * 299.55801 * 21 20 18 23 23 C 1.53485 * 109.09460 * 64.62317 * 22 21 20 24 24 C 1.53098 * 110.07125 * 301.19764 * 23 22 21 25 25 H 1.09002 * 112.76798 * 282.42334 * 24 23 22 26 26 C 1.50699 * 109.47380 * 59.99354 * 9 7 2 27 27 C 1.34516 * 125.79301 * 265.00480 * 26 9 7 28 28 C 1.41385 * 106.84089 * 179.97438 * 27 26 9 29 29 C 1.34520 * 106.84148 * 359.97438 * 28 27 26 30 30 O 1.34302 * 108.41848 * 359.73924 * 29 28 27 31 31 H 0.97002 * 120.00455 * 359.97438 * 1 2 3 32 32 H 1.09005 * 109.98696 * 120.69375 * 17 16 14 33 33 H 1.09003 * 109.99062 * 242.00258 * 17 16 14 34 34 H 1.09001 * 109.07999 * 55.51216 * 20 18 17 35 35 H 1.09002 * 109.07452 * 174.54120 * 20 18 17 36 36 H 1.09002 * 109.64739 * 184.59629 * 22 21 20 37 37 H 1.08999 * 109.64225 * 305.02407 * 22 21 20 38 38 H 1.08996 * 110.14233 * 180.60321 * 23 22 21 39 39 H 1.08999 * 108.85151 * 60.97830 * 23 22 21 40 40 H 1.07996 * 126.57908 * 359.96550 * 27 26 9 41 41 H 1.07993 * 126.58066 * 179.97438 * 28 27 26 42 42 H 1.07994 * 125.78612 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 8 2.1946 -3.6027 0.0005 12 6 1.8034 -4.7390 0.5986 13 8 0.7086 -4.8092 1.1049 14 6 2.7297 -5.9270 0.6385 15 1 3.0173 -6.2202 -0.3712 16 8 2.1046 -7.0284 1.3224 17 6 3.0945 -7.7612 2.0640 18 6 4.4347 -7.0404 1.8497 19 1 4.9611 -7.4853 1.0051 20 6 5.3146 -7.0861 3.0790 21 8 4.7335 -6.3654 4.1649 22 6 4.5313 -4.9799 3.8651 23 6 3.5014 -4.8561 2.7339 24 6 3.9934 -5.6029 1.4913 25 1 4.7530 -5.0492 0.9395 26 6 0.3851 -2.5793 -1.2301 27 6 -0.9135 -2.2359 -1.3020 28 6 -1.3256 -2.4685 -2.6343 29 6 -0.2540 -2.9397 -3.2971 30 8 0.7808 -2.9989 -2.4431 31 1 -0.4851 0.8400 0.0004 32 1 2.8389 -7.7653 3.1236 33 1 3.1576 -8.7837 1.6917 34 1 5.4574 -8.1249 3.3766 35 1 6.2836 -6.6478 2.8399 36 1 4.1634 -4.4630 4.7515 37 1 5.4724 -4.5332 3.5446 38 1 3.3422 -3.8071 2.4843 39 1 2.5590 -5.2914 3.0663 40 1 -1.5242 -1.8556 -0.4966 41 1 -2.3115 -2.3003 -3.0417 42 1 -0.2289 -3.2182 -4.3402 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772395143.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:42:10 Heat of formation + Delta-G solvation = -173.643531 kcal Electronic energy + Delta-G solvation = -28623.908231 eV Core-core repulsion = 24535.450954 eV Total energy + Delta-G solvation = -4088.457277 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.20712 -42.25368 -40.76089 -38.64966 -37.48133 -35.36143 -34.22384 -33.55192 -32.94827 -31.69357 -30.12088 -28.57792 -26.49695 -25.61654 -24.64118 -24.09532 -22.44399 -21.81456 -21.00885 -20.63880 -19.14406 -18.59608 -18.33279 -17.80776 -17.59112 -17.30340 -16.93561 -16.62741 -16.42793 -16.34561 -16.18318 -15.99699 -15.01065 -14.77222 -14.43874 -14.20863 -14.06213 -13.68335 -13.56447 -13.50445 -13.40478 -13.21104 -13.15187 -13.01761 -12.83868 -12.66480 -12.22993 -12.16967 -12.05391 -11.82603 -11.40998 -11.30413 -11.18657 -10.84040 -10.71756 -10.54173 -10.53386 -9.13669 -8.24653 -6.54895 1.05714 1.14742 1.37714 1.40558 1.50554 1.60174 2.04921 2.33753 2.38485 2.81613 2.95689 3.00125 3.11329 3.49257 3.56054 3.83323 3.92041 3.96522 4.13795 4.19002 4.23944 4.32299 4.37976 4.47136 4.54337 4.56961 4.62842 4.67286 4.71393 4.78376 4.83369 4.99108 5.07231 5.12985 5.17050 5.29911 5.38314 5.44825 5.64051 5.71277 5.79251 5.91149 6.18503 6.46396 6.55141 6.85372 7.16995 8.71541 Molecular weight = 322.13amu Principal moments of inertia in cm(-1) A = 0.014384 B = 0.004513 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.088057 B = 6203.117741 C = 7579.214216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.023 3.977 3 Si 0.982 3.018 4 H -0.258 1.258 5 H -0.278 1.278 6 H -0.272 1.272 7 C -0.550 4.550 8 H 0.079 0.921 9 C 0.305 3.695 10 H 0.036 0.964 11 O -0.347 6.347 12 C 0.451 3.549 13 O -0.540 6.540 14 C 0.093 3.907 15 H 0.133 0.867 16 O -0.386 6.386 17 C 0.050 3.950 18 C -0.141 4.141 19 H 0.133 0.867 20 C 0.066 3.934 21 O -0.392 6.392 22 C 0.070 3.930 23 C -0.162 4.162 24 C -0.096 4.096 25 H 0.136 0.864 26 C -0.013 4.013 27 C -0.191 4.191 28 C -0.230 4.230 29 C -0.069 4.069 30 O -0.194 6.194 31 H 0.270 0.730 32 H 0.067 0.933 33 H 0.104 0.896 34 H 0.121 0.879 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.046 0.954 40 H 0.124 0.876 41 H 0.165 0.835 42 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.895 -12.378 0.651 17.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.180 4.180 3 Si 0.805 3.195 4 H -0.181 1.181 5 H -0.204 1.204 6 H -0.198 1.198 7 C -0.587 4.587 8 H 0.097 0.903 9 C 0.251 3.749 10 H 0.054 0.946 11 O -0.263 6.263 12 C 0.295 3.705 13 O -0.430 6.430 14 C 0.034 3.966 15 H 0.150 0.850 16 O -0.305 6.305 17 C -0.026 4.026 18 C -0.160 4.160 19 H 0.151 0.849 20 C -0.011 4.011 21 O -0.311 6.311 22 C -0.006 4.006 23 C -0.200 4.200 24 C -0.114 4.114 25 H 0.154 0.846 26 C -0.063 4.063 27 C -0.210 4.210 28 C -0.249 4.249 29 C -0.135 4.135 30 O -0.092 6.092 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.122 0.878 34 H 0.139 0.861 35 H 0.098 0.902 36 H 0.115 0.885 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.142 0.858 41 H 0.183 0.817 42 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 11.405 -12.489 0.920 16.938 hybrid contribution -0.906 1.506 -0.183 1.767 sum 10.498 -10.982 0.737 15.211 Atomic orbital electron populations 1.70184 1.07357 1.28405 1.46726 1.25858 0.96008 1.02892 0.93257 0.85145 0.79089 0.77344 0.77942 1.18149 1.20403 1.19758 1.21157 0.94260 0.88261 1.55030 0.90257 1.18757 0.85581 0.82614 0.87944 0.94632 1.86502 1.47788 1.21965 1.70039 1.24230 0.86953 0.85250 0.74087 1.90609 1.24459 1.83500 1.44434 1.22828 0.90122 0.83276 1.00363 0.84977 1.88657 1.34893 1.40820 1.66164 1.23430 0.86547 0.96105 0.96498 1.22803 0.97341 0.93351 1.02490 0.84924 1.22236 0.94853 0.98955 0.85011 1.88085 1.83393 1.21241 1.38352 1.22612 0.97780 0.82889 0.97352 1.22330 1.00196 1.00607 0.96893 1.22991 0.95127 0.98031 0.95273 0.84648 1.23395 0.94845 1.02135 0.85919 1.21364 0.95135 1.06023 0.98517 1.22073 1.01466 1.07440 0.93958 1.24703 0.85033 1.06605 0.97171 1.83949 1.38893 1.67405 1.18910 0.92048 0.91495 0.87756 0.86101 0.90213 0.88500 0.90403 0.92030 0.93511 0.85798 0.81738 0.74195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.45 10.48 21.45 0.22 -50.23 16 2 C 0.02 1.25 5.30 84.65 0.45 1.69 16 3 Si 0.98 42.29 29.54 68.60 2.03 44.32 16 4 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.55 -30.72 8.89 25.60 0.23 -30.49 16 8 H 0.08 4.27 7.81 -2.91 -0.02 4.24 16 9 C 0.30 16.95 2.41 29.10 0.07 17.02 16 10 H 0.04 2.23 7.16 -2.39 -0.02 2.21 16 11 O -0.35 -16.83 9.84 -48.79 -0.48 -17.31 16 12 C 0.45 20.16 5.54 71.24 0.39 20.55 16 13 O -0.54 -28.67 15.77 28.23 0.45 -28.23 16 14 C 0.09 2.96 3.64 30.84 0.11 3.07 16 15 H 0.13 3.48 8.14 -2.39 -0.02 3.46 16 16 O -0.39 -12.79 10.23 -130.53 -1.33 -14.13 16 17 C 0.05 1.09 6.83 72.21 0.49 1.58 16 18 C -0.14 -2.32 2.98 -10.60 -0.03 -2.36 16 19 H 0.13 1.31 8.14 -2.38 -0.02 1.29 16 20 C 0.07 0.92 6.12 71.41 0.44 1.36 16 21 O -0.39 -8.48 10.48 -148.98 -1.56 -10.04 16 22 C 0.07 1.57 6.81 72.14 0.49 2.06 16 23 C -0.16 -4.80 4.22 30.79 0.13 -4.67 16 24 C -0.10 -2.32 3.58 -9.23 -0.03 -2.35 16 25 H 0.14 2.74 8.14 -2.39 -0.02 2.72 16 26 C -0.01 -0.68 5.67 24.83 0.14 -0.54 16 27 C -0.19 -9.99 9.04 22.19 0.20 -9.78 16 28 C -0.23 -9.77 10.91 22.19 0.24 -9.52 16 29 C -0.07 -2.70 12.09 66.97 0.81 -1.89 16 30 O -0.19 -9.52 10.63 0.83 0.01 -9.51 16 31 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 32 H 0.07 1.62 7.62 -2.38 -0.02 1.60 16 33 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.08 0.81 8.13 -2.39 -0.02 0.79 16 36 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.08 1.40 8.12 -2.39 -0.02 1.38 16 38 H 0.06 2.14 7.77 -2.39 -0.02 2.12 16 39 H 0.05 1.69 6.99 -2.39 -0.02 1.67 16 40 H 0.12 6.90 7.49 -2.91 -0.02 6.88 16 41 H 0.17 5.68 8.06 -2.91 -0.02 5.66 16 42 H 0.24 6.35 8.06 -2.91 -0.02 6.33 16 Total: -1.00 -76.66 346.69 4.50 -72.16 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: 1.03 Total: 27.23 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: 4.13 Total: -14.27 kcal Atomic # 7 Polarization: -50.45 SS G_CDS: 0.22 Total: -50.23 kcal Atomic # 8 Polarization: -76.30 SS G_CDS: -2.92 Total: -79.22 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -76.66 4.50 -72.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772395143.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.480 kcal (2) G-P(sol) polarization free energy of solvation -76.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds