Wall clock time and date at job start Sat Apr 11 2020 00:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 110.01464 * 2 1 4 4 C 1.54271 * 110.07291 * 121.41626 * 2 1 3 5 5 C 1.54896 * 104.19352 * 142.91935 * 4 2 1 6 6 C 1.54884 * 102.74614 * 322.05541 * 5 4 2 7 7 C 1.53874 * 110.03299 * 238.60989 * 2 1 3 8 8 H 1.08996 * 110.03500 * 121.33351 * 7 2 1 9 9 N 1.46492 * 110.03198 * 359.94977 * 7 2 1 10 10 C 1.34774 * 120.00178 * 155.00416 * 9 7 2 11 11 O 1.21589 * 119.99910 * 359.97438 * 10 9 7 12 12 N 1.34778 * 120.00644 * 179.97438 * 10 9 7 13 13 C 1.39274 * 120.00702 * 175.31906 * 12 10 9 14 14 C 1.39469 * 119.83499 * 31.22976 * 13 12 10 15 15 C 1.36374 * 120.17714 * 179.72402 * 14 13 12 16 16 C 1.40886 * 119.84816 * 359.97438 * 15 14 13 17 17 C 1.41154 * 120.15637 * 179.97438 * 16 15 14 18 18 H 1.08007 * 120.00339 * 331.22124 * 17 16 15 19 19 C 1.39887 * 120.00012 * 151.22184 * 17 16 15 20 20 N 1.30878 * 120.00005 * 343.71036 * 19 17 16 21 21 Si 1.86799 * 120.00087 * 163.71458 * 19 17 16 22 22 H 1.48497 * 109.47495 * 59.99477 * 21 19 17 23 23 H 1.48505 * 109.47152 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46987 * 299.99697 * 21 19 17 25 25 C 1.40834 * 119.68587 * 0.02562 * 16 15 14 26 26 C 1.36473 * 119.82197 * 0.02562 * 25 16 15 27 27 Cl 1.73595 * 119.93181 * 180.02562 * 26 25 16 28 28 H 1.08999 * 109.47093 * 181.39239 * 1 2 3 29 29 H 1.08997 * 109.47652 * 301.39116 * 1 2 3 30 30 H 1.09002 * 109.47210 * 61.39607 * 1 2 3 31 31 H 1.08993 * 110.48647 * 261.59440 * 4 2 1 32 32 H 1.08999 * 110.48487 * 24.23946 * 4 2 1 33 33 H 1.08997 * 110.75595 * 80.37514 * 5 4 2 34 34 H 1.09000 * 110.75014 * 203.55821 * 5 4 2 35 35 H 1.08999 * 110.48984 * 279.26535 * 6 5 4 36 36 H 1.09005 * 110.48395 * 156.62271 * 6 5 4 37 37 H 0.97004 * 120.00529 * 335.00037 * 9 7 2 38 38 H 0.97000 * 119.99321 * 355.31877 * 12 10 9 39 39 H 1.07999 * 119.91094 * 359.74284 * 14 13 12 40 40 H 1.08001 * 120.07528 * 179.97438 * 15 14 13 41 41 H 0.97007 * 120.00330 * 180.02562 * 20 19 17 42 42 H 1.08001 * 120.09264 * 180.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9030 1.0242 0.0000 4 6 2.0594 -0.7553 1.2366 5 6 3.3150 -1.4996 0.7182 6 6 2.8884 -1.9396 -0.7043 7 6 2.0570 -0.7530 -1.2341 8 1 2.6852 -0.0941 -1.8334 9 7 0.9359 -1.2451 -2.0383 10 6 1.1006 -1.4720 -3.3566 11 8 2.1797 -1.2678 -3.8784 12 7 0.0694 -1.9253 -4.0965 13 6 0.2104 -2.0671 -5.4748 14 6 1.4558 -2.3855 -6.0158 15 6 1.6005 -2.5315 -7.3640 16 6 0.4880 -2.3605 -8.2112 17 6 0.6305 -2.5096 -9.6076 18 1 1.5775 -2.2936 -10.0800 19 6 -0.4547 -2.9371 -10.3798 20 7 -1.4870 -3.4986 -9.8036 21 14 -0.4306 -2.7067 -12.2334 22 1 0.7281 -3.4364 -12.8079 23 1 -1.6886 -3.2400 -12.8149 24 1 -0.3118 -1.2609 -12.5509 25 6 -0.7668 -2.0390 -7.6585 26 6 -0.8965 -1.8950 -6.3076 27 17 -2.4420 -1.4994 -5.6231 28 1 -0.3633 -1.0273 0.0250 29 1 -0.3634 0.5353 0.8772 30 1 -0.3634 0.4920 -0.9022 31 1 2.3305 -0.0534 2.0251 32 1 1.3158 -1.4664 1.5965 33 1 4.1718 -0.8273 0.6740 34 1 3.5366 -2.3648 1.3431 35 1 2.2788 -2.8419 -0.6578 36 1 3.7646 -2.1020 -1.3322 37 1 0.0749 -1.4078 -1.6222 38 1 -0.7711 -2.1528 -3.6690 39 1 2.3078 -2.5171 -5.3653 40 1 2.5658 -2.7777 -7.7812 41 1 -2.2395 -3.7954 -10.3391 42 1 -1.6241 -1.9068 -8.3018 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335583557.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:42:01 Heat of formation + Delta-G solvation = -25.840519 kcal Electronic energy + Delta-G solvation = -24546.491014 eV Core-core repulsion = 20937.444872 eV Total energy + Delta-G solvation = -3609.046141 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.119 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.29073 -38.72200 -37.32634 -35.50751 -34.40709 -33.62677 -32.82936 -31.41837 -29.41399 -29.10373 -27.49526 -25.38039 -24.83195 -22.05094 -21.15973 -20.87670 -20.27382 -19.36156 -18.20196 -17.38428 -16.71747 -15.86517 -15.50754 -15.22884 -15.00634 -14.41982 -14.18685 -14.06289 -13.80704 -13.46246 -12.96447 -12.83658 -12.57082 -12.47090 -12.33276 -11.95989 -11.87054 -11.25502 -11.22438 -11.14559 -11.10725 -10.97352 -10.95277 -10.85151 -10.69312 -10.46224 -10.35033 -10.08650 -9.86522 -9.59992 -9.19387 -8.88111 -8.79046 -7.51919 -7.02939 -6.81106 -4.38203 2.51384 2.87408 3.02936 3.05534 3.07918 3.12951 3.22726 3.69102 3.90270 4.30243 4.43409 4.54217 4.57224 4.72258 5.05669 5.18129 5.24554 5.28474 5.39853 5.47385 5.52663 5.58313 5.64193 5.74000 5.86349 5.91845 6.07490 6.12609 6.16429 6.25852 6.55814 6.65083 6.79674 6.89291 7.04885 7.12287 7.26289 7.35950 7.72143 7.74363 7.92876 8.12860 8.43999 8.45568 8.76953 8.79791 9.08275 10.13204 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.026180 B = 0.002890 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.263976 B = 9687.521775 C =10513.891693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.104 4.104 3 H 0.080 0.920 4 C -0.119 4.119 5 C -0.125 4.125 6 C -0.135 4.135 7 C 0.165 3.835 8 H 0.091 0.909 9 N -0.747 5.747 10 C 0.696 3.304 11 O -0.580 6.580 12 N -0.665 5.665 13 C 0.025 3.975 14 C -0.074 4.074 15 C -0.208 4.208 16 C 0.113 3.887 17 C -0.458 4.458 18 H 0.082 0.918 19 C 0.075 3.925 20 N -0.792 5.792 21 Si 0.910 3.090 22 H -0.265 1.265 23 H -0.278 1.278 24 H -0.263 1.263 25 C -0.143 4.143 26 C -0.019 4.019 27 Cl -0.123 7.123 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.394 0.606 38 H 0.393 0.607 39 H 0.126 0.874 40 H 0.102 0.898 41 H 0.283 0.717 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.206 3.487 17.298 17.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.123 4.123 3 H 0.099 0.901 4 C -0.157 4.157 5 C -0.163 4.163 6 C -0.174 4.174 7 C 0.059 3.941 8 H 0.109 0.891 9 N -0.405 5.405 10 C 0.397 3.603 11 O -0.457 6.457 12 N -0.311 5.311 13 C -0.069 4.069 14 C -0.094 4.094 15 C -0.229 4.229 16 C 0.110 3.890 17 C -0.487 4.487 18 H 0.100 0.900 19 C -0.143 4.143 20 N -0.417 5.417 21 Si 0.734 3.266 22 H -0.189 1.189 23 H -0.203 1.203 24 H -0.187 1.187 25 C -0.163 4.163 26 C -0.047 4.047 27 Cl -0.095 7.095 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.231 0.769 38 H 0.227 0.773 39 H 0.144 0.856 40 H 0.120 0.880 41 H 0.094 0.906 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.816 3.613 16.833 17.312 hybrid contribution -1.163 -0.171 -0.394 1.240 sum 0.652 3.442 16.440 16.809 Atomic orbital electron populations 1.21835 0.94978 1.01625 1.02295 1.22018 0.96198 0.99791 0.94296 0.90138 1.22450 0.97530 0.98928 0.96777 1.22461 0.97617 0.99975 0.96211 1.22822 1.00314 0.98414 0.95886 1.21399 0.87116 0.94881 0.90743 0.89108 1.45518 1.14914 1.72656 1.07440 1.15998 0.84691 0.78463 0.81117 1.90859 1.25256 1.58632 1.70981 1.42030 1.14901 1.67672 1.06478 1.16649 0.94139 1.16117 0.80014 1.20570 0.95160 0.98182 0.95461 1.20837 0.99056 1.10480 0.92482 1.17523 0.90087 0.87980 0.93389 1.19481 0.97898 1.39577 0.91759 0.89994 1.25922 0.94517 0.92389 1.01477 1.69811 1.06319 1.26870 1.38653 0.86332 0.78480 0.79943 0.81811 1.18939 1.20311 1.18746 1.20773 0.99864 1.05030 0.90665 1.20321 0.83085 1.07824 0.93510 1.98243 1.32001 1.93263 1.85957 0.92476 0.92297 0.91850 0.91611 0.91443 0.91354 0.91519 0.91288 0.90993 0.76941 0.77274 0.85633 0.88027 0.90595 0.85395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 7.73 37.15 0.29 -0.87 16 2 C -0.10 -0.88 3.50 -89.50 -0.31 -1.20 16 3 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 4 C -0.12 -0.87 6.36 -25.07 -0.16 -1.03 16 5 C -0.12 -1.01 6.91 -24.74 -0.17 -1.18 16 6 C -0.14 -1.45 6.53 -25.07 -0.16 -1.61 16 7 C 0.16 1.89 3.23 -66.81 -0.22 1.68 16 8 H 0.09 1.25 7.56 -51.93 -0.39 0.85 16 9 N -0.75 -9.64 4.47 -57.58 -0.26 -9.90 16 10 C 0.70 12.42 8.42 -86.92 -0.73 11.68 16 11 O -0.58 -12.48 13.15 5.29 0.07 -12.41 16 12 N -0.66 -12.19 5.08 -14.07 -0.07 -12.26 16 13 C 0.03 0.56 6.38 -83.52 -0.53 0.03 16 14 C -0.07 -1.74 8.66 -39.79 -0.34 -2.09 16 15 C -0.21 -5.15 9.74 -39.25 -0.38 -5.53 16 16 C 0.11 2.97 5.53 -106.81 -0.59 2.38 16 17 C -0.46 -11.84 9.02 -37.86 -0.34 -12.18 16 18 H 0.08 2.03 7.90 -52.48 -0.41 1.62 16 19 C 0.08 1.85 5.13 -17.34 -0.09 1.76 16 20 N -0.79 -20.00 11.15 55.54 0.62 -19.38 16 21 Si 0.91 18.33 29.59 -169.99 -5.03 13.30 16 22 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 23 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 24 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 25 C -0.14 -3.63 8.37 -39.24 -0.33 -3.96 16 26 C -0.02 -0.44 6.30 -39.72 -0.25 -0.69 16 27 Cl -0.12 -2.37 27.84 -51.86 -1.44 -3.81 16 28 H 0.06 0.41 6.91 -51.93 -0.36 0.05 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.56 7.72 -51.93 -0.40 0.16 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.47 7.84 -51.93 -0.41 0.06 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.76 8.05 -51.93 -0.42 0.35 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.39 4.12 5.84 -40.82 -0.24 3.88 16 38 H 0.39 6.18 7.94 -40.82 -0.32 5.85 16 39 H 0.13 2.96 5.88 -52.49 -0.31 2.65 16 40 H 0.10 2.36 8.06 -52.49 -0.42 1.94 16 41 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 42 H 0.13 3.36 6.42 -52.49 -0.34 3.03 16 LS Contribution 351.68 15.07 5.30 5.30 Total: -1.00 -28.47 351.68 -10.83 -39.30 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -5.69 Total: 12.65 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -4.33 Total: -12.80 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: 0.29 Total: -41.54 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.07 Total: -12.41 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.03 Total: 13.30 kcal Atomic # 17 Polarization: -2.37 SS G_CDS: -1.44 Total: -3.81 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.47 -10.83 -39.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335583557.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.463 kcal (2) G-P(sol) polarization free energy of solvation -28.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds