Wall clock time and date at job start Sat Apr 11 2020 00:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 110.01464 * 2 1 4 4 C 1.54271 * 110.07291 * 121.41626 * 2 1 3 5 5 C 1.54896 * 104.19352 * 142.91935 * 4 2 1 6 6 C 1.54884 * 102.74614 * 322.05541 * 5 4 2 7 7 C 1.53874 * 110.03299 * 238.60989 * 2 1 3 8 8 H 1.08996 * 110.03500 * 121.33351 * 7 2 1 9 9 N 1.46492 * 110.03198 * 359.94977 * 7 2 1 10 10 C 1.34774 * 120.00178 * 155.00416 * 9 7 2 11 11 O 1.21589 * 119.99910 * 359.97438 * 10 9 7 12 12 N 1.34778 * 120.00644 * 179.97438 * 10 9 7 13 13 C 1.39274 * 120.00702 * 175.31906 * 12 10 9 14 14 C 1.39469 * 119.83499 * 31.22976 * 13 12 10 15 15 C 1.36374 * 120.17714 * 179.72402 * 14 13 12 16 16 C 1.40886 * 119.84816 * 359.97438 * 15 14 13 17 17 C 1.41154 * 120.15637 * 179.97438 * 16 15 14 18 18 H 1.08007 * 120.00339 * 331.22124 * 17 16 15 19 19 C 1.39887 * 120.00012 * 151.22184 * 17 16 15 20 20 N 1.30878 * 120.00005 * 343.71036 * 19 17 16 21 21 Si 1.86799 * 120.00087 * 163.71458 * 19 17 16 22 22 H 1.48497 * 109.47495 * 59.99477 * 21 19 17 23 23 H 1.48505 * 109.47152 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46987 * 299.99697 * 21 19 17 25 25 C 1.40834 * 119.68587 * 0.02562 * 16 15 14 26 26 C 1.36473 * 119.82197 * 0.02562 * 25 16 15 27 27 Cl 1.73595 * 119.93181 * 180.02562 * 26 25 16 28 28 H 1.08999 * 109.47093 * 181.39239 * 1 2 3 29 29 H 1.08997 * 109.47652 * 301.39116 * 1 2 3 30 30 H 1.09002 * 109.47210 * 61.39607 * 1 2 3 31 31 H 1.08993 * 110.48647 * 261.59440 * 4 2 1 32 32 H 1.08999 * 110.48487 * 24.23946 * 4 2 1 33 33 H 1.08997 * 110.75595 * 80.37514 * 5 4 2 34 34 H 1.09000 * 110.75014 * 203.55821 * 5 4 2 35 35 H 1.08999 * 110.48984 * 279.26535 * 6 5 4 36 36 H 1.09005 * 110.48395 * 156.62271 * 6 5 4 37 37 H 0.97004 * 120.00529 * 335.00037 * 9 7 2 38 38 H 0.97000 * 119.99321 * 355.31877 * 12 10 9 39 39 H 1.07999 * 119.91094 * 359.74284 * 14 13 12 40 40 H 1.08001 * 120.07528 * 179.97438 * 15 14 13 41 41 H 0.97007 * 120.00330 * 180.02562 * 20 19 17 42 42 H 1.08001 * 120.09264 * 180.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9030 1.0242 0.0000 4 6 2.0594 -0.7553 1.2366 5 6 3.3150 -1.4996 0.7182 6 6 2.8884 -1.9396 -0.7043 7 6 2.0570 -0.7530 -1.2341 8 1 2.6852 -0.0941 -1.8334 9 7 0.9359 -1.2451 -2.0383 10 6 1.1006 -1.4720 -3.3566 11 8 2.1797 -1.2678 -3.8784 12 7 0.0694 -1.9253 -4.0965 13 6 0.2104 -2.0671 -5.4748 14 6 1.4558 -2.3855 -6.0158 15 6 1.6005 -2.5315 -7.3640 16 6 0.4880 -2.3605 -8.2112 17 6 0.6305 -2.5096 -9.6076 18 1 1.5775 -2.2936 -10.0800 19 6 -0.4547 -2.9371 -10.3798 20 7 -1.4870 -3.4986 -9.8036 21 14 -0.4306 -2.7067 -12.2334 22 1 0.7281 -3.4364 -12.8079 23 1 -1.6886 -3.2400 -12.8149 24 1 -0.3118 -1.2609 -12.5509 25 6 -0.7668 -2.0390 -7.6585 26 6 -0.8965 -1.8950 -6.3076 27 17 -2.4420 -1.4994 -5.6231 28 1 -0.3633 -1.0273 0.0250 29 1 -0.3634 0.5353 0.8772 30 1 -0.3634 0.4920 -0.9022 31 1 2.3305 -0.0534 2.0251 32 1 1.3158 -1.4664 1.5965 33 1 4.1718 -0.8273 0.6740 34 1 3.5366 -2.3648 1.3431 35 1 2.2788 -2.8419 -0.6578 36 1 3.7646 -2.1020 -1.3322 37 1 0.0749 -1.4078 -1.6222 38 1 -0.7711 -2.1528 -3.6690 39 1 2.3078 -2.5171 -5.3653 40 1 2.5658 -2.7777 -7.7812 41 1 -2.2395 -3.7954 -10.3391 42 1 -1.6241 -1.9068 -8.3018 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335583557.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:42:00 Heat of formation + Delta-G solvation = -40.371595 kcal Electronic energy + Delta-G solvation = -24547.121128 eV Core-core repulsion = 20937.444872 eV Total energy + Delta-G solvation = -3609.676256 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.119 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.64942 -39.99176 -38.85867 -37.23848 -36.11165 -35.03296 -34.35400 -32.15010 -31.28774 -30.85021 -28.54924 -26.70196 -25.96691 -23.75868 -22.85915 -21.94929 -21.56503 -20.29962 -19.71725 -19.17300 -18.23201 -17.19175 -16.84134 -16.45604 -16.35381 -16.01378 -15.68952 -15.18837 -14.98437 -14.68566 -14.55101 -14.34096 -14.09283 -13.67416 -13.60151 -13.19589 -12.97248 -12.93579 -12.85976 -12.65872 -12.17602 -12.05722 -11.93396 -11.89439 -11.84766 -11.68487 -11.60152 -11.48050 -11.46154 -11.33006 -10.93434 -10.60869 -10.03041 -9.39936 -8.85078 -8.63621 -6.31519 0.68838 0.96750 1.37972 1.41186 1.49333 1.53289 1.76773 2.18151 2.22820 2.70518 3.31349 3.57020 3.60061 3.71309 3.94405 4.33477 4.36179 4.44838 4.53265 4.56202 4.59417 4.70917 4.77681 4.90627 4.94865 4.96726 4.99988 5.07281 5.20515 5.23323 5.24338 5.26360 5.31704 5.35653 5.45771 5.50680 5.63501 5.68088 5.87457 6.01036 6.13331 6.25421 6.51511 6.86317 6.88682 7.09642 7.63076 8.32138 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.026180 B = 0.002890 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.263976 B = 9687.521775 C =10513.891693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.098 4.098 3 H 0.085 0.915 4 C -0.112 4.112 5 C -0.119 4.119 6 C -0.136 4.136 7 C 0.157 3.843 8 H 0.064 0.936 9 N -0.724 5.724 10 C 0.694 3.306 11 O -0.618 6.618 12 N -0.660 5.660 13 C 0.037 3.963 14 C -0.082 4.082 15 C -0.220 4.220 16 C 0.086 3.914 17 C -0.492 4.492 18 H 0.081 0.919 19 C 0.038 3.962 20 N -0.821 5.821 21 Si 0.982 3.018 22 H -0.260 1.260 23 H -0.267 1.267 24 H -0.261 1.261 25 C -0.159 4.159 26 C -0.025 4.025 27 Cl -0.088 7.088 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.050 0.950 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.049 0.951 37 H 0.409 0.591 38 H 0.408 0.592 39 H 0.125 0.875 40 H 0.105 0.895 41 H 0.291 0.709 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.243 3.877 19.162 19.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.117 4.117 3 H 0.103 0.897 4 C -0.149 4.149 5 C -0.157 4.157 6 C -0.175 4.175 7 C 0.052 3.948 8 H 0.082 0.918 9 N -0.383 5.383 10 C 0.395 3.605 11 O -0.499 6.499 12 N -0.307 5.307 13 C -0.059 4.059 14 C -0.102 4.102 15 C -0.240 4.240 16 C 0.083 3.917 17 C -0.521 4.521 18 H 0.099 0.901 19 C -0.178 4.178 20 N -0.447 5.447 21 Si 0.803 3.197 22 H -0.184 1.184 23 H -0.192 1.192 24 H -0.186 1.186 25 C -0.179 4.179 26 C -0.054 4.054 27 Cl -0.059 7.059 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.249 0.751 38 H 0.244 0.756 39 H 0.143 0.857 40 H 0.124 0.876 41 H 0.101 0.899 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.823 4.004 18.781 19.220 hybrid contribution -0.871 -0.266 -0.785 1.202 sum -0.048 3.738 17.996 18.380 Atomic orbital electron populations 1.21841 0.94093 1.02284 1.02555 1.22001 0.96899 0.99679 0.93102 0.89704 1.22436 0.97018 0.99142 0.96328 1.22447 0.98276 1.00647 0.94313 1.22777 0.99263 0.97976 0.97440 1.21590 0.86613 0.95220 0.91374 0.91802 1.45402 1.16191 1.71069 1.05613 1.16176 0.83793 0.78145 0.82384 1.90837 1.26745 1.60141 1.72149 1.41882 1.15856 1.67910 1.05051 1.16680 0.93413 1.13966 0.81841 1.20654 0.95901 0.98539 0.95120 1.20977 0.99127 1.10912 0.93026 1.17822 0.90869 0.88892 0.94115 1.19720 0.98814 1.41336 0.92250 0.90103 1.26723 0.93677 0.91359 1.06029 1.69855 1.06974 1.27257 1.40564 0.85250 0.78907 0.79804 0.75784 1.18375 1.19151 1.18558 1.20692 0.99264 1.06378 0.91594 1.20332 0.84941 1.07055 0.93047 1.98241 1.29484 1.92916 1.85261 0.91657 0.90520 0.93092 0.89843 0.90513 0.91059 0.90280 0.91475 0.93231 0.75100 0.75556 0.85705 0.87641 0.89875 0.86741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 7.73 71.98 0.56 -1.33 16 2 C -0.10 -1.43 3.50 -10.07 -0.04 -1.47 16 3 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 4 C -0.11 -1.26 6.36 31.67 0.20 -1.05 16 5 C -0.12 -1.66 6.91 31.89 0.22 -1.44 16 6 C -0.14 -2.81 6.53 31.67 0.21 -2.60 16 7 C 0.16 3.50 3.23 45.72 0.15 3.64 16 8 H 0.06 1.79 7.56 -2.39 -0.02 1.77 16 9 N -0.72 -17.89 4.47 -454.36 -2.03 -19.93 16 10 C 0.69 24.54 8.42 179.05 1.51 26.05 16 11 O -0.62 -27.10 13.15 -4.00 -0.05 -27.16 16 12 N -0.66 -23.71 5.08 -316.68 -1.61 -25.32 16 13 C 0.04 1.64 6.38 38.58 0.25 1.89 16 14 C -0.08 -3.97 8.66 22.13 0.19 -3.78 16 15 C -0.22 -11.29 9.74 22.48 0.22 -11.07 16 16 C 0.09 4.66 5.53 -21.28 -0.12 4.55 16 17 C -0.49 -26.24 9.02 23.39 0.21 -26.03 16 18 H 0.08 4.15 7.90 -2.91 -0.02 4.13 16 19 C 0.04 1.87 5.13 85.23 0.44 2.31 16 20 N -0.82 -42.10 11.15 21.82 0.24 -41.86 16 21 Si 0.98 37.69 29.59 68.60 2.03 39.72 16 22 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 23 H -0.27 -9.68 7.11 99.48 0.71 -8.98 16 24 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 25 C -0.16 -8.25 8.37 22.49 0.19 -8.07 16 26 C -0.02 -1.15 6.30 22.18 0.14 -1.01 16 27 Cl -0.09 -3.27 27.84 -2.72 -0.08 -3.35 16 28 H 0.06 0.71 6.91 -2.39 -0.02 0.70 16 29 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.05 0.78 7.72 -2.39 -0.02 0.76 16 31 H 0.08 0.71 8.14 -2.39 -0.02 0.70 16 32 H 0.08 0.76 7.84 -2.39 -0.02 0.75 16 33 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.07 1.41 8.05 -2.39 -0.02 1.39 16 36 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 37 H 0.41 7.67 5.84 -92.71 -0.54 7.13 16 38 H 0.41 12.14 7.94 -92.71 -0.74 11.40 16 39 H 0.13 6.06 5.88 -2.91 -0.02 6.04 16 40 H 0.11 5.13 8.06 -2.91 -0.02 5.11 16 41 H 0.29 13.50 8.30 -92.70 -0.77 12.73 16 42 H 0.11 6.19 6.42 -2.91 -0.02 6.17 16 Total: -1.00 -63.25 351.68 2.61 -60.64 By element: Atomic # 1 Polarization: 36.88 SS G_CDS: -0.22 Total: 36.66 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: 4.32 Total: -19.41 kcal Atomic # 7 Polarization: -83.71 SS G_CDS: -3.40 Total: -87.11 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -0.05 Total: -27.16 kcal Atomic # 14 Polarization: 37.69 SS G_CDS: 2.03 Total: 39.72 kcal Atomic # 17 Polarization: -3.27 SS G_CDS: -0.08 Total: -3.35 kcal Total: -63.25 2.61 -60.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335583557.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.267 kcal (2) G-P(sol) polarization free energy of solvation -63.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds