Wall clock time and date at job start Sat Apr 11 2020 00:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.05654 * 2 1 4 4 C 1.53875 * 110.03710 * 238.58060 * 2 1 3 5 5 C 1.54262 * 106.59968 * 240.72088 * 4 2 1 6 6 C 1.54886 * 104.19592 * 336.38643 * 5 4 2 7 7 C 1.54269 * 110.03163 * 121.41492 * 2 1 3 8 8 H 1.08998 * 110.48634 * 24.21456 * 7 2 1 9 9 N 1.46503 * 110.59783 * 261.63247 * 7 2 1 10 10 C 1.34777 * 119.99807 * 156.91307 * 9 7 2 11 11 O 1.21578 * 120.00360 * 0.02562 * 10 9 7 12 12 N 1.34782 * 120.00083 * 179.97438 * 10 9 7 13 13 C 1.39268 * 120.00199 * 174.45309 * 12 10 9 14 14 C 1.39471 * 119.83925 * 338.65357 * 13 12 10 15 15 C 1.36370 * 120.17673 * 179.97438 * 14 13 12 16 16 C 1.40891 * 119.85204 * 0.02562 * 15 14 13 17 17 C 1.41150 * 120.15770 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00214 * 151.11413 * 17 16 15 19 19 C 1.39899 * 120.00241 * 331.12101 * 17 16 15 20 20 N 1.30884 * 119.99916 * 167.24303 * 19 17 16 21 21 Si 1.86796 * 119.99643 * 347.24711 * 19 17 16 22 22 H 1.48503 * 109.47157 * 95.27294 * 21 19 17 23 23 H 1.48507 * 109.46839 * 215.27021 * 21 19 17 24 24 H 1.48497 * 109.47212 * 335.27150 * 21 19 17 25 25 C 1.40840 * 119.68205 * 0.02562 * 16 15 14 26 26 C 1.36467 * 119.81777 * 359.73582 * 25 16 15 27 27 Cl 1.73601 * 119.92582 * 180.25661 * 26 25 16 28 28 H 1.09000 * 109.47695 * 298.58573 * 1 2 3 29 29 H 1.08998 * 109.46930 * 58.58603 * 1 2 3 30 30 H 1.09000 * 109.47055 * 178.58376 * 1 2 3 31 31 H 1.08997 * 110.03375 * 121.42921 * 4 2 1 32 32 H 1.08999 * 110.02896 * 0.02562 * 4 2 1 33 33 H 1.09000 * 110.48630 * 217.71125 * 5 4 2 34 34 H 1.08994 * 110.60174 * 95.12076 * 5 4 2 35 35 H 1.09009 * 110.75585 * 279.63241 * 6 5 4 36 36 H 1.08999 * 110.75846 * 156.26202 * 6 5 4 37 37 H 0.97003 * 120.00248 * 336.91301 * 9 7 2 38 38 H 0.97002 * 119.99476 * 354.45342 * 12 10 9 39 39 H 1.07997 * 119.90716 * 359.97438 * 14 13 12 40 40 H 1.08008 * 120.07408 * 180.02562 * 15 14 13 41 41 H 0.96999 * 119.99789 * 179.97438 * 20 19 17 42 42 H 1.08005 * 120.08666 * 180.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0572 -0.7536 -1.2337 5 6 2.8874 -1.9407 -0.7034 6 6 3.3136 -1.5008 0.7192 7 6 2.0584 -0.7555 1.2369 8 1 1.3142 -1.4659 1.5967 9 7 2.4225 0.1857 2.2990 10 6 2.4571 -0.2264 3.5818 11 8 2.1867 -1.3792 3.8575 12 7 2.7925 0.6392 4.5589 13 6 2.7168 0.2469 5.8930 14 6 1.9033 -0.8263 6.2557 15 6 1.8244 -1.2166 7.5599 16 6 2.5669 -0.5327 8.5428 17 6 2.4897 -0.9309 9.8947 18 1 3.3311 -0.7729 10.5531 19 6 1.3233 -1.5303 10.3819 20 7 1.3303 -2.1226 11.5490 21 14 -0.2440 -1.4853 9.3666 22 1 -0.3594 -2.7388 8.5786 23 1 -1.4157 -1.3590 10.2703 24 1 -0.2028 -0.3226 8.4439 25 6 3.3857 0.5509 8.1699 26 6 3.4585 0.9272 6.8602 27 17 4.4720 2.2582 6.3965 28 1 -0.3634 0.4917 0.9024 29 1 -0.3633 0.5356 -0.8770 30 1 -0.3633 -1.0273 -0.0254 31 1 2.6868 -0.0954 -1.8324 32 1 1.2230 -1.1189 -1.8326 33 1 3.7637 -2.1038 -1.3307 34 1 2.2791 -2.8439 -0.6571 35 1 4.1710 -0.8290 0.6753 36 1 3.5324 -2.3678 1.3424 37 1 2.6386 1.1054 2.0790 38 1 3.0866 1.5355 4.3328 39 1 1.3342 -1.3496 5.5015 40 1 1.1942 -2.0482 7.8389 41 1 0.5215 -2.5379 11.8870 42 1 3.9580 1.0796 8.9179 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335583559.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:42:07 Heat of formation + Delta-G solvation = -28.574509 kcal Electronic energy + Delta-G solvation = -24581.142531 eV Core-core repulsion = 20971.977835 eV Total energy + Delta-G solvation = -3609.164696 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.119 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.34917 -38.82390 -37.59266 -35.81711 -34.50048 -33.77786 -33.04907 -31.46286 -29.80387 -29.69911 -27.68589 -25.41155 -24.56422 -22.06745 -21.65259 -20.77772 -20.52269 -19.84240 -18.08103 -17.57648 -17.15160 -16.25482 -15.39577 -15.22483 -14.97958 -14.39781 -14.35396 -14.15945 -13.88143 -13.66080 -13.14611 -12.88841 -12.73901 -12.70515 -12.54918 -12.42537 -12.13766 -11.60465 -11.41004 -11.28740 -11.07069 -11.04835 -10.98464 -10.84877 -10.68854 -10.55243 -10.40888 -10.20315 -9.80729 -9.69256 -9.36828 -9.00525 -8.88019 -7.77426 -7.18710 -7.00055 -4.50860 2.27884 2.50021 2.82598 2.96445 3.09600 3.20231 3.28929 3.52457 3.94217 4.24330 4.38360 4.44237 4.46226 4.61684 5.01810 5.13603 5.23036 5.25101 5.28722 5.31189 5.40639 5.57690 5.69332 5.71404 5.83513 5.86435 5.90149 6.05940 6.08663 6.11136 6.21346 6.42166 6.55341 6.60504 6.78208 6.90643 7.00720 7.21272 7.43806 7.49282 7.74860 7.87114 8.24704 8.29572 8.48522 8.69168 8.91059 10.01286 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.015716 B = 0.003425 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.141124 B = 8172.860844 C = 9294.904698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.103 4.103 3 H 0.075 0.925 4 C -0.118 4.118 5 C -0.124 4.124 6 C -0.137 4.137 7 C 0.164 3.836 8 H 0.095 0.905 9 N -0.743 5.743 10 C 0.698 3.302 11 O -0.575 6.575 12 N -0.665 5.665 13 C 0.029 3.971 14 C -0.069 4.069 15 C -0.219 4.219 16 C 0.089 3.911 17 C -0.433 4.433 18 H 0.094 0.906 19 C 0.081 3.919 20 N -0.806 5.806 21 Si 0.913 3.087 22 H -0.269 1.269 23 H -0.292 1.292 24 H -0.240 1.240 25 C -0.188 4.188 26 C -0.007 4.007 27 Cl -0.115 7.115 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.392 0.608 38 H 0.396 0.604 39 H 0.138 0.862 40 H 0.105 0.895 41 H 0.287 0.713 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.291 5.376 -21.186 21.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.122 4.122 3 H 0.094 0.906 4 C -0.156 4.156 5 C -0.162 4.162 6 C -0.176 4.176 7 C 0.059 3.941 8 H 0.113 0.887 9 N -0.398 5.398 10 C 0.399 3.601 11 O -0.453 6.453 12 N -0.310 5.310 13 C -0.065 4.065 14 C -0.089 4.089 15 C -0.239 4.239 16 C 0.085 3.915 17 C -0.461 4.461 18 H 0.112 0.888 19 C -0.138 4.138 20 N -0.429 5.429 21 Si 0.740 3.260 22 H -0.195 1.195 23 H -0.220 1.220 24 H -0.163 1.163 25 C -0.209 4.209 26 C -0.036 4.036 27 Cl -0.087 7.087 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.225 0.775 38 H 0.231 0.769 39 H 0.155 0.845 40 H 0.123 0.877 41 H 0.098 0.902 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.565 4.304 -20.741 21.190 hybrid contribution -0.227 0.959 -0.468 1.091 sum -0.792 5.263 -21.209 21.866 Atomic orbital electron populations 1.21882 0.94397 1.02156 1.01801 1.21993 0.96304 0.99604 0.94277 0.90641 1.22175 0.99574 0.97093 0.96717 1.22298 0.99641 0.98045 0.96178 1.22926 0.97971 1.00792 0.95947 1.21740 0.96521 0.90598 0.85268 0.88666 1.45185 1.75584 1.13926 1.05107 1.15921 0.79040 0.84818 0.80357 1.90843 1.55758 1.17205 1.81472 1.42067 1.69468 1.15329 1.04180 1.16622 1.06005 1.03190 0.80729 1.20765 0.96568 0.95091 0.96518 1.20752 1.07339 1.03103 0.92704 1.17651 0.90768 0.89420 0.93624 1.19458 1.01148 1.31279 0.94245 0.88842 1.26200 1.01455 0.91057 0.95112 1.69670 1.30783 1.24510 1.17986 0.86296 0.78976 0.81321 0.79371 1.19533 1.21986 1.16293 1.20467 1.07538 1.00330 0.92572 1.20110 0.96716 0.92291 0.94470 1.98262 1.68962 1.48525 1.92935 0.92436 0.92593 0.92316 0.91723 0.91429 0.91564 0.91385 0.91315 0.90819 0.77454 0.76942 0.84462 0.87702 0.90235 0.86612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 8.84 37.16 0.33 -0.81 16 2 C -0.10 -0.82 3.23 -89.50 -0.29 -1.11 16 3 H 0.08 0.54 7.73 -51.93 -0.40 0.14 16 4 C -0.12 -0.82 6.46 -25.62 -0.17 -0.99 16 5 C -0.12 -0.99 6.83 -25.08 -0.17 -1.16 16 6 C -0.14 -1.42 6.58 -24.74 -0.16 -1.59 16 7 C 0.16 1.79 2.71 -66.27 -0.18 1.61 16 8 H 0.10 1.25 7.32 -51.93 -0.38 0.87 16 9 N -0.74 -8.89 5.18 -57.05 -0.30 -9.18 16 10 C 0.70 11.74 8.39 -86.91 -0.73 11.01 16 11 O -0.58 -11.91 12.96 5.30 0.07 -11.84 16 12 N -0.66 -11.33 5.21 -14.07 -0.07 -11.40 16 13 C 0.03 0.61 6.50 -83.52 -0.54 0.07 16 14 C -0.07 -1.60 8.68 -39.80 -0.35 -1.94 16 15 C -0.22 -5.36 6.84 -39.25 -0.27 -5.63 16 16 C 0.09 2.23 5.19 -106.80 -0.55 1.68 16 17 C -0.43 -11.47 9.60 -37.86 -0.36 -11.83 16 18 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 19 C 0.08 2.10 5.47 -17.33 -0.09 2.00 16 20 N -0.81 -21.20 13.93 55.55 0.77 -20.42 16 21 Si 0.91 20.73 24.36 -169.99 -4.14 16.59 16 22 H -0.27 -6.01 6.77 56.52 0.38 -5.63 16 23 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.24 -5.54 6.45 56.52 0.36 -5.18 16 25 C -0.19 -4.30 9.50 -39.24 -0.37 -4.68 16 26 C -0.01 -0.15 6.30 -39.72 -0.25 -0.40 16 27 Cl -0.12 -1.95 27.70 -51.86 -1.44 -3.38 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.43 7.67 -51.93 -0.40 0.03 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.39 3.56 8.37 -40.82 -0.34 3.22 16 38 H 0.40 5.61 7.65 -40.82 -0.31 5.30 16 39 H 0.14 3.18 5.50 -52.49 -0.29 2.89 16 40 H 0.11 2.57 4.19 -52.48 -0.22 2.35 16 41 H 0.29 6.85 8.30 -40.82 -0.34 6.51 16 42 H 0.12 2.51 8.06 -52.48 -0.42 2.09 16 LS Contribution 348.75 15.07 5.26 5.26 Total: -1.00 -28.64 348.75 -9.77 -38.41 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -5.76 Total: 9.74 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -4.16 Total: -13.76 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: 0.41 Total: -41.01 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.07 Total: -11.84 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.14 Total: 16.59 kcal Atomic # 17 Polarization: -1.95 SS G_CDS: -1.44 Total: -3.38 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.64 -9.77 -38.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335583559.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.835 kcal (2) G-P(sol) polarization free energy of solvation -28.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds