Wall clock time and date at job start Sat Apr 11 2020 00:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47070 * 2 1 4 4 H 1.08996 * 110.91709 * 308.89679 * 3 2 1 5 5 C 1.55158 * 111.00394 * 184.99488 * 3 2 1 6 6 C 1.54325 * 102.94246 * 206.42272 * 5 3 2 7 7 N 1.47023 * 107.27099 * 22.20098 * 6 5 3 8 8 C 1.34769 * 125.64548 * 181.02159 * 7 6 5 9 9 O 1.21582 * 119.99579 * 180.02562 * 8 7 6 10 10 N 1.34773 * 120.00632 * 0.02562 * 8 7 6 11 11 C 1.39274 * 120.00453 * 186.25069 * 10 8 7 12 12 C 1.39464 * 119.83695 * 21.22721 * 11 10 8 13 13 C 1.36372 * 120.17822 * 179.76185 * 12 11 10 14 14 C 1.40889 * 119.84861 * 0.51536 * 13 12 11 15 15 C 1.41158 * 120.16326 * 179.72092 * 14 13 12 16 16 H 1.07988 * 120.00381 * 156.83385 * 15 14 13 17 17 C 1.39892 * 119.99391 * 336.83631 * 15 14 13 18 18 N 1.30888 * 120.00020 * 327.18472 * 17 15 14 19 19 Si 1.86797 * 119.99989 * 147.19059 * 17 15 14 20 20 H 1.48496 * 109.47460 * 94.98517 * 19 17 15 21 21 H 1.48500 * 109.47259 * 214.98596 * 19 17 15 22 22 H 1.48509 * 109.47084 * 334.98624 * 19 17 15 23 23 C 1.40849 * 119.68562 * 359.73783 * 14 13 12 24 24 C 1.36478 * 119.81290 * 0.02562 * 23 14 13 25 25 Cl 1.73603 * 119.92489 * 179.97438 * 24 23 14 26 26 C 1.47425 * 108.70077 * 1.27888 * 7 6 5 27 27 H 1.08996 * 109.47450 * 300.00219 * 1 2 3 28 28 H 1.09009 * 109.46851 * 60.00128 * 1 2 3 29 29 H 1.09001 * 109.47487 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47378 * 240.00295 * 2 1 3 31 31 H 1.08998 * 109.46955 * 120.00345 * 2 1 3 32 32 H 1.09008 * 110.71826 * 88.06564 * 5 3 2 33 33 H 1.08995 * 110.72259 * 324.79157 * 5 3 2 34 34 H 1.08997 * 109.88589 * 262.77537 * 6 5 3 35 35 H 1.09004 * 109.87566 * 141.61062 * 6 5 3 36 36 H 0.97011 * 119.99521 * 6.52375 * 10 8 7 37 37 H 1.07998 * 119.91234 * 0.02562 * 12 11 10 38 38 H 1.07996 * 120.08087 * 180.23168 * 13 12 11 39 39 H 0.96999 * 119.99998 * 179.97438 * 18 17 15 40 40 H 1.07998 * 120.09081 * 180.02562 * 23 14 13 41 41 H 1.09001 * 110.36266 * 94.48701 * 26 7 6 42 42 H 1.08995 * 110.36479 * 216.80757 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5669 2.0225 -0.7924 5 6 3.5858 1.4859 -0.1261 6 6 3.9508 2.8219 0.5546 7 7 2.8408 3.1715 1.4532 8 6 2.7675 4.2798 2.2164 9 8 1.7975 4.4666 2.9253 10 7 3.7692 5.1812 2.1939 11 6 3.7564 6.2588 3.0761 12 6 2.9970 6.1906 4.2438 13 6 2.9832 7.2398 5.1149 14 6 3.7301 8.3994 4.8278 15 6 3.7159 9.4916 5.7219 16 1 4.5316 10.1993 5.7228 17 6 2.6452 9.6572 6.6067 18 7 1.4404 9.2880 6.2526 19 14 2.9348 10.4053 8.2937 20 1 2.6573 11.8632 8.2430 21 1 2.0308 9.7635 9.2817 22 1 4.3466 10.1840 8.6976 23 6 4.4907 8.4639 3.6441 24 6 4.4987 7.4042 2.7841 25 17 5.4347 7.4808 1.3240 26 6 1.8244 2.1058 1.3857 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8932 -0.5139 0.8899 32 1 3.8872 1.4918 -1.1737 33 1 4.0395 0.6473 0.4021 34 1 4.0769 3.5995 -0.1988 35 1 4.8701 2.7063 1.1287 36 1 4.4972 5.0815 1.5604 37 1 2.4216 5.3029 4.4609 38 1 2.3975 7.1838 6.0205 39 1 0.6980 9.4025 6.8663 40 1 5.0660 9.3494 3.4177 41 1 1.9813 1.3809 2.1844 42 1 0.8233 2.5319 1.4502 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335584545.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:42:25 Heat of formation + Delta-G solvation = -22.335826 kcal Electronic energy + Delta-G solvation = -24441.693388 eV Core-core repulsion = 20832.799222 eV Total energy + Delta-G solvation = -3608.894167 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.119 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.29245 -38.52962 -37.17586 -35.61612 -34.41464 -34.16585 -32.98322 -30.67948 -29.42224 -29.09533 -28.14790 -25.37424 -23.99856 -22.44086 -21.60674 -21.11577 -20.36829 -19.32894 -17.94202 -17.50334 -16.67812 -16.06967 -15.37531 -15.10534 -14.85878 -14.40691 -14.22134 -13.83738 -13.56742 -13.43174 -12.98620 -12.94161 -12.83309 -12.64808 -12.42069 -12.25065 -12.04747 -11.97816 -11.45966 -11.41951 -11.18484 -10.94470 -10.88833 -10.76652 -10.76021 -10.50357 -10.40344 -10.06907 -10.06106 -9.59043 -9.19469 -8.71859 -8.49603 -7.53374 -7.15487 -6.87371 -4.32255 2.53989 2.82565 2.87095 3.01874 3.05956 3.11058 3.15994 3.67394 3.87528 4.15887 4.38355 4.44926 4.51459 4.53966 4.92094 4.98927 5.12327 5.18065 5.29372 5.47793 5.52919 5.54753 5.56850 5.72865 5.75153 5.79739 5.84200 5.98768 6.10907 6.15055 6.28391 6.66889 6.75593 6.87756 7.01491 7.11748 7.23138 7.35173 7.63651 7.82431 7.93509 8.07367 8.42193 8.47539 8.74455 8.79729 9.06348 9.99250 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.018082 B = 0.003074 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.128605 B = 9105.309358 C =10406.637379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.111 4.111 3 C -0.104 4.104 4 H 0.085 0.915 5 C -0.125 4.125 6 C 0.098 3.902 7 N -0.642 5.642 8 C 0.714 3.286 9 O -0.572 6.572 10 N -0.660 5.660 11 C 0.020 3.980 12 C -0.086 4.086 13 C -0.162 4.162 14 C 0.115 3.885 15 C -0.463 4.463 16 H 0.084 0.916 17 C 0.087 3.913 18 N -0.761 5.761 19 Si 0.898 3.102 20 H -0.269 1.269 21 H -0.273 1.273 22 H -0.257 1.257 23 C -0.212 4.212 24 C -0.008 4.008 25 Cl -0.126 7.126 26 C 0.132 3.868 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.394 0.606 37 H 0.132 0.868 38 H 0.110 0.890 39 H 0.286 0.714 40 H 0.107 0.893 41 H 0.063 0.937 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.355 -14.846 -10.362 18.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.149 4.149 3 C -0.123 4.123 4 H 0.103 0.897 5 C -0.162 4.162 6 C -0.026 4.026 7 N -0.382 5.382 8 C 0.417 3.583 9 O -0.449 6.449 10 N -0.306 5.306 11 C -0.074 4.074 12 C -0.106 4.106 13 C -0.182 4.182 14 C 0.111 3.889 15 C -0.490 4.490 16 H 0.102 0.898 17 C -0.136 4.136 18 N -0.384 5.384 19 Si 0.721 3.279 20 H -0.194 1.194 21 H -0.198 1.198 22 H -0.180 1.180 23 C -0.232 4.232 24 C -0.036 4.036 25 Cl -0.097 7.097 26 C 0.009 3.991 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.229 0.771 37 H 0.149 0.851 38 H 0.128 0.872 39 H 0.097 0.903 40 H 0.126 0.874 41 H 0.081 0.919 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.463 -14.648 -9.855 17.715 hybrid contribution 0.518 0.409 0.170 0.682 sum 1.981 -14.239 -9.685 17.334 Atomic orbital electron populations 1.21811 0.95558 1.01661 1.02289 1.21448 0.96176 0.94957 1.02282 1.22505 0.95520 0.96738 0.97551 0.89651 1.22666 0.95791 0.96673 1.01119 1.21976 0.90497 0.97095 0.93034 1.47586 1.22471 1.21561 1.46536 1.15433 0.83157 0.79171 0.80581 1.90865 1.32827 1.77037 1.44193 1.42054 1.24348 1.25244 1.38918 1.16662 1.09309 0.87416 0.94004 1.20792 0.98055 1.00108 0.91641 1.20837 1.04248 0.92957 1.00189 1.17471 0.89229 0.92652 0.89505 1.19439 1.04999 1.09297 1.15257 0.89765 1.25954 0.93967 0.93746 0.99902 1.69959 0.99814 1.33118 1.35465 0.86475 0.80243 0.79515 0.81668 1.19426 1.19820 1.18031 1.20394 1.09644 0.97208 0.95999 1.20081 0.99811 0.95465 0.88247 1.98242 1.73557 1.98391 1.39553 1.22125 0.92607 0.88401 0.95974 0.92288 0.92666 0.92732 0.91581 0.91582 0.90110 0.90441 0.91810 0.91707 0.77120 0.85096 0.87162 0.90343 0.87448 0.91851 0.90452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.09 9.82 37.15 0.36 -0.72 16 2 C -0.11 -0.75 5.44 -26.73 -0.15 -0.90 16 3 C -0.10 -0.88 3.02 -88.35 -0.27 -1.15 16 4 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 5 C -0.12 -0.95 6.42 -24.90 -0.16 -1.11 16 6 C 0.10 1.03 6.17 -3.06 -0.02 1.01 16 7 N -0.64 -9.36 3.32 -176.10 -0.59 -9.95 16 8 C 0.71 13.92 8.31 -86.93 -0.72 13.19 16 9 O -0.57 -13.39 13.55 5.29 0.07 -13.32 16 10 N -0.66 -12.83 5.16 -14.07 -0.07 -12.90 16 11 C 0.02 0.46 6.49 -83.52 -0.54 -0.08 16 12 C -0.09 -2.15 8.68 -39.80 -0.35 -2.49 16 13 C -0.16 -4.26 8.74 -39.25 -0.34 -4.61 16 14 C 0.11 3.02 5.56 -106.80 -0.59 2.43 16 15 C -0.46 -11.96 8.93 -37.86 -0.34 -12.30 16 16 H 0.08 2.08 8.02 -52.49 -0.42 1.66 16 17 C 0.09 2.14 4.74 -17.33 -0.08 2.06 16 18 N -0.76 -19.48 11.89 55.55 0.66 -18.82 16 19 Si 0.90 18.06 29.66 -169.99 -5.04 13.01 16 20 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 21 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 22 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 23 C -0.21 -5.16 9.51 -39.23 -0.37 -5.54 16 24 C -0.01 -0.17 6.30 -39.72 -0.25 -0.42 16 25 Cl -0.13 -2.33 27.69 -51.86 -1.44 -3.76 16 26 C 0.13 1.60 5.86 -2.41 -0.01 1.58 16 27 H 0.06 0.46 7.75 -51.93 -0.40 0.06 16 28 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.44 7.96 -51.93 -0.41 0.03 16 32 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 33 H 0.08 0.53 8.04 -51.93 -0.42 0.11 16 34 H 0.06 0.65 8.11 -51.93 -0.42 0.23 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.39 6.59 6.62 -40.82 -0.27 6.32 16 37 H 0.13 3.33 5.52 -52.49 -0.29 3.04 16 38 H 0.11 2.95 6.62 -52.49 -0.35 2.60 16 39 H 0.29 6.59 8.30 -40.82 -0.34 6.25 16 40 H 0.11 2.49 8.06 -52.49 -0.42 2.06 16 41 H 0.06 0.74 7.91 -51.93 -0.41 0.33 16 42 H 0.08 1.05 8.03 -51.93 -0.42 0.63 16 LS Contribution 356.37 15.07 5.37 5.37 Total: -1.00 -29.51 356.37 -10.77 -40.28 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -5.90 Total: 9.13 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -3.83 Total: -9.04 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: 0.00 Total: -41.67 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.07 Total: -13.32 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.04 Total: 13.01 kcal Atomic # 17 Polarization: -2.33 SS G_CDS: -1.44 Total: -3.76 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.51 -10.77 -40.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335584545.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.940 kcal (2) G-P(sol) polarization free energy of solvation -29.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds