Wall clock time and date at job start Sat Apr 11 2020 00:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 115.55163 * 2 1 4 4 C 1.53003 * 117.49550 * 214.33161 * 2 1 3 5 5 C 1.53007 * 60.00135 * 252.51000 * 4 2 1 6 6 N 1.46495 * 117.50254 * 252.51491 * 5 4 2 7 7 C 1.34775 * 119.99948 * 254.58484 * 6 5 4 8 8 O 1.21588 * 120.00005 * 355.26290 * 7 6 5 9 9 N 1.34779 * 120.00159 * 175.27078 * 7 6 5 10 10 C 1.46497 * 120.00199 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47332 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.47387 * 179.97438 * 11 10 9 13 13 H 1.07998 * 119.99514 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00285 * 180.02562 * 12 11 10 15 15 N 1.31509 * 119.99894 * 180.02562 * 14 12 11 16 16 Si 1.86805 * 119.99760 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.46817 * 90.00482 * 16 14 12 18 18 H 1.48500 * 109.46860 * 210.00033 * 16 14 12 19 19 H 1.48501 * 109.47156 * 330.00248 * 16 14 12 20 20 C 1.50697 * 117.49645 * 107.49009 * 5 4 2 21 21 C 1.38242 * 119.98863 * 25.69011 * 20 5 4 22 22 C 1.38215 * 120.01220 * 179.72614 * 21 20 5 23 23 C 1.38356 * 119.98787 * 0.54654 * 22 21 20 24 24 Cl 1.73597 * 120.01616 * 179.74854 * 23 22 21 25 25 C 1.38361 * 119.97194 * 359.72763 * 23 22 21 26 26 C 1.38211 * 119.98356 * 0.02562 * 25 23 22 27 27 H 1.09001 * 109.47394 * 149.31030 * 1 2 3 28 28 H 1.08997 * 109.47319 * 269.30686 * 1 2 3 29 29 H 1.09000 * 109.47089 * 29.31177 * 1 2 3 30 30 H 1.08998 * 117.50065 * 359.97438 * 4 2 1 31 31 H 1.09005 * 117.49913 * 145.00062 * 4 2 1 32 32 H 0.97003 * 119.99964 * 74.57418 * 6 5 4 33 33 H 0.97000 * 119.99806 * 359.97438 * 9 7 6 34 34 H 1.09001 * 109.46886 * 299.99518 * 10 9 7 35 35 H 1.08993 * 109.47599 * 59.99674 * 10 9 7 36 36 H 1.09000 * 109.47044 * 300.00038 * 11 10 9 37 37 H 1.09003 * 109.47154 * 59.99821 * 11 10 9 38 38 H 0.97008 * 119.99979 * 179.97438 * 15 14 12 39 39 H 1.07996 * 119.99042 * 0.02562 * 21 20 5 40 40 H 1.07998 * 120.00607 * 180.27526 * 22 21 20 41 41 H 1.08001 * 120.00541 * 179.97438 * 25 23 22 42 42 H 1.08001 * 119.98890 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9833 0.0000 4 6 2.2364 -1.1208 -0.7654 5 6 2.2365 -1.1213 0.7646 6 7 3.4932 -0.7912 1.4412 7 6 4.2188 -1.7640 2.0272 8 8 3.7896 -2.9008 2.0696 9 7 5.4203 -1.4768 2.5662 10 6 6.2088 -2.5342 3.2036 11 6 7.5196 -1.9461 3.7299 12 6 8.3304 -3.0337 4.3862 13 1 7.9488 -4.0432 4.4245 14 6 9.5590 -2.7396 4.9387 15 7 10.2668 -3.6889 5.5109 16 14 10.2187 -0.9932 4.8730 17 1 9.7758 -0.2511 6.0807 18 1 11.7026 -1.0260 4.8287 19 1 9.7020 -0.3142 3.6576 20 6 1.3720 -2.1412 1.4600 21 6 1.0494 -3.3241 0.8215 22 6 0.2612 -4.2623 1.4611 23 6 -0.2141 -4.0125 2.7362 24 17 -1.2095 -5.1875 3.5375 25 6 0.1045 -2.8259 3.3725 26 6 0.8969 -1.8908 2.7339 27 1 -0.3634 -0.8837 -0.5245 28 1 -0.3634 -0.0124 1.0275 29 1 -0.3633 0.8961 -0.5031 30 1 1.6111 -1.8583 -1.2686 31 1 3.1713 -0.8747 -1.2690 32 1 3.8031 0.1276 1.4673 33 1 5.7628 -0.5700 2.5321 34 1 5.6432 -2.9596 4.0327 35 1 6.4271 -3.3144 2.4746 36 1 8.0854 -1.5204 2.9012 37 1 7.3009 -1.1661 4.4592 38 1 11.1313 -3.4821 5.8993 39 1 1.4172 -3.5172 -0.1753 40 1 0.0129 -5.1883 0.9639 41 1 -0.2667 -2.6302 4.3677 42 1 1.1460 -0.9647 3.2307 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337642452.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:42:59 Heat of formation + Delta-G solvation = -11.117088 kcal Electronic energy + Delta-G solvation = -24390.432102 eV Core-core repulsion = 20782.024417 eV Total energy + Delta-G solvation = -3608.407686 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.119 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.59685 -40.14937 -38.61237 -37.23813 -36.52191 -34.82339 -34.14429 -32.03384 -31.84095 -31.32225 -29.02342 -26.76686 -24.56683 -23.84548 -22.92809 -22.43472 -21.50907 -20.77309 -19.29900 -18.86376 -18.31106 -17.53459 -16.66920 -16.32737 -16.20826 -16.03256 -15.91923 -15.31638 -15.16916 -14.85589 -14.59648 -14.51073 -14.40384 -14.27512 -13.80117 -13.33454 -13.23120 -13.06187 -12.65842 -12.55976 -12.46123 -12.29632 -12.15277 -12.13327 -11.79416 -11.75706 -11.65282 -11.52588 -11.27917 -10.97668 -10.78454 -10.15068 -9.94638 -9.71411 -9.32544 -8.29542 -6.36906 0.17161 0.37975 1.16092 1.39125 1.42130 1.53333 1.67223 2.18545 2.37283 2.57701 2.93133 3.05556 3.24720 3.51746 3.79916 3.83354 3.96510 3.99978 4.30958 4.37226 4.41994 4.46443 4.48983 4.54501 4.74263 4.76812 4.90491 4.94407 4.97361 5.01440 5.15829 5.19861 5.24670 5.27576 5.42698 5.42842 5.47041 5.50697 5.66625 5.69761 5.85604 6.06205 6.23909 6.70673 7.18754 7.27682 7.69061 8.87456 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.013306 B = 0.003022 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.779520 B = 9262.594578 C =10827.419712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.108 4.108 3 H 0.133 0.867 4 C -0.179 4.179 5 C 0.133 3.867 6 N -0.699 5.699 7 C 0.697 3.303 8 O -0.616 6.616 9 N -0.733 5.733 10 C 0.169 3.831 11 C -0.010 4.010 12 C -0.539 4.539 13 H 0.027 0.973 14 C 0.003 3.997 15 N -0.952 5.952 16 Si 0.961 3.039 17 H -0.265 1.265 18 H -0.287 1.287 19 H -0.235 1.235 20 C -0.017 4.017 21 C -0.094 4.094 22 C -0.117 4.117 23 C -0.049 4.049 24 Cl -0.077 7.077 25 C -0.119 4.119 26 C -0.100 4.100 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.414 0.586 33 H 0.409 0.591 34 H 0.037 0.963 35 H 0.038 0.962 36 H 0.037 0.963 37 H 0.035 0.965 38 H 0.268 0.732 39 H 0.137 0.863 40 H 0.142 0.858 41 H 0.140 0.860 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.027 12.710 -13.411 30.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.127 4.127 3 H 0.151 0.849 4 C -0.218 4.218 5 C 0.045 3.955 6 N -0.355 5.355 7 C 0.397 3.603 8 O -0.496 6.496 9 N -0.389 5.389 10 C 0.045 3.955 11 C -0.048 4.048 12 C -0.578 4.578 13 H 0.045 0.955 14 C -0.194 4.194 15 N -0.592 5.592 16 Si 0.783 3.217 17 H -0.190 1.190 18 H -0.213 1.213 19 H -0.158 1.158 20 C -0.019 4.019 21 C -0.113 4.113 22 C -0.135 4.135 23 C -0.076 4.076 24 Cl -0.049 7.049 25 C -0.137 4.137 26 C -0.119 4.119 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.101 0.899 30 H 0.126 0.874 31 H 0.123 0.877 32 H 0.252 0.748 33 H 0.244 0.756 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.077 0.923 39 H 0.154 0.846 40 H 0.160 0.840 41 H 0.158 0.842 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -24.318 11.523 -13.206 29.976 hybrid contribution 1.100 0.369 0.650 1.330 sum -23.218 11.892 -12.556 28.951 Atomic orbital electron populations 1.21425 0.91289 1.03054 1.02349 1.22928 0.96360 0.94436 0.98981 0.84887 1.23827 1.03368 1.01754 0.92802 1.19088 0.85485 1.00395 0.90493 1.44256 1.22030 1.09797 1.59425 1.16160 0.80767 0.84868 0.78498 1.90930 1.71882 1.21699 1.65046 1.45118 1.18373 1.13451 1.61934 1.20787 0.90961 0.88935 0.94856 1.19626 0.92360 0.96192 0.96616 1.21259 1.03454 0.95678 1.37378 0.95493 1.26101 0.96729 1.02735 0.93822 1.70083 1.13822 1.35750 1.39521 0.85516 0.77125 0.78595 0.80473 1.19005 1.21317 1.15839 1.18916 0.94765 0.94062 0.94116 1.21020 0.96841 0.92479 1.00920 1.21157 0.98383 1.00493 0.93489 1.21012 0.99482 0.92291 0.94806 1.98350 1.68421 1.58185 1.79912 1.21144 0.99339 0.92575 1.00663 1.20933 0.96890 0.99592 0.94446 0.92458 0.92274 0.89918 0.87398 0.87672 0.74792 0.75571 0.94498 0.94332 0.94488 0.94693 0.92338 0.84568 0.83984 0.84191 0.84959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.28 9.27 71.98 0.67 -0.62 16 2 C -0.11 -1.24 6.30 -10.79 -0.07 -1.31 16 3 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 4 C -0.18 -2.63 9.32 30.60 0.29 -2.34 16 5 C 0.13 2.51 2.49 2.86 0.01 2.52 16 6 N -0.70 -14.40 5.56 -441.44 -2.46 -16.86 16 7 C 0.70 21.66 8.42 179.05 1.51 23.16 16 8 O -0.62 -24.68 14.46 -3.99 -0.06 -24.74 16 9 N -0.73 -22.63 5.56 -478.55 -2.66 -25.29 16 10 C 0.17 6.97 5.61 86.38 0.48 7.46 16 11 C -0.01 -0.45 4.16 29.85 0.12 -0.32 16 12 C -0.54 -30.99 9.66 25.60 0.25 -30.74 16 13 H 0.03 1.74 7.99 -2.91 -0.02 1.72 16 14 C 0.00 0.18 5.47 84.66 0.46 0.64 16 15 N -0.95 -59.68 13.96 21.45 0.30 -59.38 16 16 Si 0.96 42.17 27.47 68.60 1.88 44.05 16 17 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 18 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 19 H -0.24 -9.10 6.54 99.48 0.65 -8.45 16 20 C -0.02 -0.40 2.13 -19.86 -0.04 -0.45 16 21 C -0.09 -2.21 9.02 22.27 0.20 -2.01 16 22 C -0.12 -2.76 9.83 22.29 0.22 -2.54 16 23 C -0.05 -1.21 6.32 22.33 0.14 -1.07 16 24 Cl -0.08 -1.76 28.96 -2.72 -0.08 -1.84 16 25 C -0.12 -2.82 9.83 22.29 0.22 -2.60 16 26 C -0.10 -2.34 9.44 22.26 0.21 -2.13 16 27 H 0.06 0.65 7.88 -2.39 -0.02 0.63 16 28 H 0.06 0.71 7.76 -2.39 -0.02 0.69 16 29 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.11 1.48 6.72 -2.39 -0.02 1.47 16 31 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.41 5.57 8.80 -92.71 -0.82 4.75 16 33 H 0.41 9.58 8.49 -92.71 -0.79 8.79 16 34 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.04 1.54 7.20 -2.39 -0.02 1.52 16 37 H 0.03 1.44 7.57 -2.39 -0.02 1.42 16 38 H 0.27 15.56 8.31 -92.70 -0.77 14.79 16 39 H 0.14 2.82 6.71 -2.91 -0.02 2.80 16 40 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 41 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 42 H 0.13 2.74 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -74.79 366.30 0.99 -73.80 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: -0.61 Total: 22.61 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: 4.67 Total: -12.37 kcal Atomic # 7 Polarization: -96.71 SS G_CDS: -4.82 Total: -101.53 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.06 Total: -24.74 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 1.88 Total: 44.05 kcal Atomic # 17 Polarization: -1.76 SS G_CDS: -0.08 Total: -1.84 kcal Total: -74.79 0.99 -73.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337642452.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.688 kcal (2) G-P(sol) polarization free energy of solvation -74.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds