Wall clock time and date at job start Sat Apr 11 2020 00:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30720 * 126.27414 * 2 1 4 4 N 1.28652 * 110.34104 * 179.97438 * 3 2 1 5 5 C 1.32181 * 109.56756 * 0.02562 * 4 3 2 6 6 C 1.41051 * 133.25333 * 179.97438 * 5 4 3 7 7 C 1.35633 * 119.41032 * 180.02562 * 6 5 4 8 8 C 1.41837 * 119.59619 * 0.25659 * 7 6 5 9 9 C 1.47551 * 119.98048 * 179.74413 * 8 7 6 10 10 O 1.21599 * 119.99620 * 180.02562 * 9 8 7 11 11 N 1.34775 * 120.00582 * 359.97438 * 9 8 7 12 12 C 1.39124 * 120.00118 * 175.71413 * 11 9 8 13 13 C 1.39514 * 119.83089 * 215.04635 * 12 11 9 14 14 C 1.36366 * 120.16039 * 179.75900 * 13 12 11 15 15 C 1.40873 * 119.83186 * 0.53448 * 14 13 12 16 16 C 1.41133 * 120.16288 * 179.69407 * 15 14 13 17 17 H 1.08002 * 120.00705 * 214.79462 * 16 15 14 18 18 C 1.39911 * 120.00023 * 34.79800 * 16 15 14 19 19 N 1.30872 * 119.99594 * 355.58735 * 18 16 15 20 20 Si 1.86794 * 120.00512 * 175.58271 * 18 16 15 21 21 H 1.48508 * 109.46984 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47289 * 120.00002 * 20 18 16 23 23 H 1.48504 * 109.47070 * 240.00352 * 20 18 16 24 24 C 1.40877 * 119.68050 * 359.72213 * 15 14 13 25 25 C 1.36367 * 119.82717 * 359.97438 * 24 15 14 26 26 C 1.36531 * 120.03034 * 359.47036 * 8 7 6 27 27 N 1.35846 * 120.38189 * 0.54674 * 26 8 7 28 28 H 1.08998 * 109.46807 * 269.99939 * 1 2 3 29 29 H 1.09006 * 109.46812 * 29.99590 * 1 2 3 30 30 H 1.09000 * 109.47054 * 149.99077 * 1 2 3 31 31 H 1.07999 * 120.29451 * 0.06825 * 6 5 4 32 32 H 1.07996 * 120.20669 * 179.97438 * 7 6 5 33 33 H 0.96996 * 119.99459 * 355.71482 * 11 9 8 34 34 H 1.07999 * 119.91895 * 0.02562 * 13 12 11 35 35 H 1.08003 * 120.07985 * 180.23884 * 14 13 12 36 36 H 0.96998 * 120.00003 * 179.97438 * 19 18 16 37 37 H 1.07996 * 120.08796 * 179.97438 * 24 15 14 38 38 H 1.08001 * 119.91106 * 180.02562 * 25 24 15 39 39 H 1.08002 * 119.80785 * 180.27549 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2804 1.0539 0.0000 4 7 3.5175 0.7007 0.0005 5 6 3.6013 -0.6185 0.0004 6 6 4.6878 -1.5179 0.0003 7 6 4.4475 -2.8528 -0.0004 8 6 3.1095 -3.3236 -0.0066 9 6 2.8383 -4.7740 -0.0132 10 8 1.6914 -5.1779 -0.0189 11 7 3.8617 -5.6510 -0.0138 12 6 3.6078 -7.0163 0.0701 13 6 4.4861 -7.8438 0.7702 14 6 4.2411 -9.1822 0.8609 15 6 3.1039 -9.7304 0.2359 16 6 2.8471 -11.1157 0.3198 17 1 2.3960 -11.6328 -0.5142 18 6 3.1768 -11.8190 1.4834 19 7 3.8014 -11.2119 2.4601 20 14 2.7255 -13.6246 1.6430 21 1 2.0290 -14.0716 0.4099 22 1 3.9595 -14.4283 1.8340 23 1 1.8286 -13.8092 2.8121 24 6 2.2244 -8.8893 -0.4739 25 6 2.4791 -7.5518 -0.5507 26 6 2.0726 -2.4355 -0.0009 27 7 2.3131 -1.0985 -0.0004 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8901 -0.5138 30 1 -0.3633 -0.8899 -0.5140 31 1 5.7021 -1.1470 0.0015 32 1 5.2697 -3.5529 -0.0009 33 1 4.7751 -5.3302 -0.0727 34 1 5.3599 -7.4227 1.2452 35 1 4.9199 -9.8210 1.4064 36 1 4.0298 -11.6994 3.2670 37 1 1.3508 -9.3026 -0.9559 38 1 1.8055 -6.9057 -1.0941 39 1 1.0552 -2.7980 -0.0011 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338385079.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:43:08 Heat of formation + Delta-G solvation = 98.614204 kcal Electronic energy + Delta-G solvation = -24987.333467 eV Core-core repulsion = 21282.576594 eV Total energy + Delta-G solvation = -3704.756874 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.117 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.88321 -40.24783 -38.26202 -37.18377 -34.96261 -34.51333 -33.14789 -32.14058 -31.06526 -29.71243 -28.98592 -27.76029 -25.89909 -24.33238 -23.86999 -22.05320 -21.79878 -21.02645 -20.16105 -18.47124 -17.65510 -17.44643 -17.34780 -17.01103 -16.11640 -15.34751 -15.21410 -15.08422 -14.88571 -14.27587 -14.00235 -13.70495 -13.61190 -13.19488 -13.04061 -12.77906 -12.65503 -12.35960 -12.24688 -11.95228 -11.82385 -11.49306 -11.46752 -11.26166 -11.08689 -10.86579 -10.84348 -10.21461 -9.85377 -9.67554 -9.59515 -9.34600 -9.05011 -8.41668 -7.67201 -7.00481 -6.72513 -4.44996 0.11597 0.55188 1.82865 2.13212 2.51747 2.78060 2.98438 3.03672 3.06806 3.10366 3.29120 3.49141 3.66897 3.90280 4.05336 4.18065 4.30006 4.35644 4.50708 4.59772 4.92190 4.98221 5.04660 5.30598 5.42336 5.50271 5.54541 5.61682 5.67276 5.89622 6.06947 6.30339 6.43300 6.56635 6.76175 6.94782 7.06383 7.17086 7.51807 7.57349 7.69593 7.94558 8.07176 8.19387 8.19514 8.41590 8.55130 8.81987 8.87213 10.18295 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.033831 B = 0.002296 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.444196 B =12192.130004 C =12663.012821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.149 3.851 3 N -0.250 5.250 4 N -0.289 5.289 5 C 0.198 3.802 6 C -0.080 4.080 7 C -0.068 4.068 8 C -0.142 4.142 9 C 0.550 3.450 10 O -0.525 6.525 11 N -0.634 5.634 12 C -0.006 4.006 13 C -0.116 4.116 14 C -0.142 4.142 15 C 0.102 3.898 16 C -0.457 4.457 17 H 0.078 0.922 18 C 0.069 3.931 19 N -0.808 5.808 20 Si 0.916 3.084 21 H -0.261 1.261 22 H -0.274 1.274 23 H -0.274 1.274 24 C -0.207 4.207 25 C -0.081 4.081 26 C 0.134 3.866 27 N -0.394 5.394 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.164 0.836 32 H 0.152 0.848 33 H 0.396 0.604 34 H 0.093 0.907 35 H 0.133 0.867 36 H 0.278 0.722 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.117 14.387 -3.047 14.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.113 4.113 3 N -0.090 5.090 4 N -0.134 5.134 5 C -0.051 4.051 6 C -0.102 4.102 7 C -0.092 4.092 8 C -0.149 4.149 9 C 0.336 3.664 10 O -0.403 6.403 11 N -0.276 5.276 12 C -0.098 4.098 13 C -0.136 4.136 14 C -0.162 4.162 15 C 0.100 3.900 16 C -0.488 4.488 17 H 0.096 0.904 18 C -0.147 4.147 19 N -0.435 5.435 20 Si 0.741 3.259 21 H -0.185 1.185 22 H -0.199 1.199 23 H -0.199 1.199 24 C -0.227 4.227 25 C -0.101 4.101 26 C 0.008 3.992 27 N -0.074 5.074 28 H 0.108 0.892 29 H 0.118 0.882 30 H 0.101 0.899 31 H 0.181 0.819 32 H 0.170 0.830 33 H 0.231 0.769 34 H 0.111 0.889 35 H 0.151 0.849 36 H 0.089 0.911 37 H 0.115 0.885 38 H 0.126 0.874 39 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -0.259 15.710 -2.804 15.961 hybrid contribution -0.035 -1.922 0.318 1.948 sum -0.294 13.789 -2.486 14.014 Atomic orbital electron populations 1.20282 0.82724 1.05035 1.04507 1.25043 0.97129 0.80606 1.08551 1.74184 0.96590 1.23366 1.14834 1.74903 1.10872 1.06036 1.21544 1.22475 0.84981 0.92762 1.04908 1.20167 0.97351 0.90583 1.02054 1.21277 0.95956 0.95564 0.96427 1.19678 0.93040 0.94722 1.07461 1.17583 0.85816 0.84206 0.78774 1.90808 1.20744 1.78974 1.49774 1.42770 1.08454 1.05740 1.70603 1.17202 1.02370 0.80274 1.09953 1.20310 0.98818 0.94770 0.99667 1.21206 0.98509 0.93146 1.03365 1.17760 0.89348 0.93378 0.89532 1.19573 1.35466 0.93335 1.00411 0.90414 1.25912 0.92952 1.00447 0.95357 1.69760 1.30693 1.37569 1.05504 0.86126 0.78976 0.81523 0.79270 1.18519 1.19916 1.19921 1.20812 1.00600 0.92640 1.08636 1.20390 0.96211 0.95045 0.98437 1.21728 1.02225 0.79135 0.96087 1.43682 1.09119 1.06840 1.47734 0.89212 0.88199 0.89938 0.81893 0.83000 0.76854 0.88931 0.84922 0.91053 0.88455 0.87409 0.79704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.40 36.01 0.37 -0.07 16 2 C 0.15 1.67 8.14 -154.12 -1.25 0.42 16 3 N -0.25 -3.49 12.18 32.97 0.40 -3.09 16 4 N -0.29 -4.18 12.29 31.19 0.38 -3.80 16 5 C 0.20 2.45 7.92 -155.95 -1.23 1.21 16 6 C -0.08 -0.74 10.09 -39.45 -0.40 -1.14 16 7 C -0.07 -0.60 9.53 -39.14 -0.37 -0.97 16 8 C -0.14 -1.63 5.84 -105.34 -0.61 -2.24 16 9 C 0.55 8.41 7.59 -12.46 -0.09 8.31 16 10 O -0.53 -9.91 13.69 5.28 0.07 -9.84 16 11 N -0.63 -9.75 5.25 -10.68 -0.06 -9.80 16 12 C -0.01 -0.12 6.30 -83.60 -0.53 -0.65 16 13 C -0.12 -2.44 9.90 -39.78 -0.39 -2.83 16 14 C -0.14 -3.45 8.61 -39.26 -0.34 -3.79 16 15 C 0.10 2.61 5.55 -106.80 -0.59 2.02 16 16 C -0.46 -11.68 9.02 -37.86 -0.34 -12.03 16 17 H 0.08 1.91 7.85 -52.49 -0.41 1.50 16 18 C 0.07 1.67 5.42 -17.33 -0.09 1.58 16 19 N -0.81 -20.19 10.60 55.55 0.59 -19.60 16 20 Si 0.92 18.29 29.56 -169.99 -5.03 13.26 16 21 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 22 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 23 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 24 C -0.21 -4.95 9.74 -39.26 -0.38 -5.33 16 25 C -0.08 -1.80 8.61 -39.78 -0.34 -2.14 16 26 C 0.13 1.46 10.45 -16.39 -0.17 1.29 16 27 N -0.39 -4.56 2.94 -59.36 -0.17 -4.73 16 28 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 32 H 0.15 0.90 6.45 -52.49 -0.34 0.56 16 33 H 0.40 4.50 6.86 -40.82 -0.28 4.22 16 34 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 35 H 0.13 3.34 6.13 -52.48 -0.32 3.02 16 36 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 37 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 38 H 0.11 2.33 6.22 -52.49 -0.33 2.01 16 39 H 0.19 1.79 7.56 -52.49 -0.40 1.40 16 LS Contribution 338.89 15.07 5.11 5.11 Total: -1.00 -31.79 338.89 -9.23 -41.02 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -3.75 Total: 7.83 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -6.78 Total: -16.35 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: 1.14 Total: -41.03 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.07 Total: -9.84 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.26 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.79 -9.23 -41.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338385079.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.633 kcal (2) G-P(sol) polarization free energy of solvation -31.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds