Wall clock time and date at job start Sat Apr 11 2020 00:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30720 * 126.27414 * 2 1 4 4 N 1.28652 * 110.34104 * 179.97438 * 3 2 1 5 5 C 1.32181 * 109.56756 * 0.02562 * 4 3 2 6 6 C 1.41051 * 133.25333 * 179.97438 * 5 4 3 7 7 C 1.35633 * 119.41032 * 180.02562 * 6 5 4 8 8 C 1.41837 * 119.59619 * 0.25659 * 7 6 5 9 9 C 1.47551 * 119.98048 * 179.74413 * 8 7 6 10 10 O 1.21599 * 119.99620 * 180.02562 * 9 8 7 11 11 N 1.34775 * 120.00582 * 359.97438 * 9 8 7 12 12 C 1.39124 * 120.00118 * 175.71413 * 11 9 8 13 13 C 1.39514 * 119.83089 * 215.04635 * 12 11 9 14 14 C 1.36366 * 120.16039 * 179.75900 * 13 12 11 15 15 C 1.40873 * 119.83186 * 0.53448 * 14 13 12 16 16 C 1.41133 * 120.16288 * 179.69407 * 15 14 13 17 17 H 1.08002 * 120.00705 * 214.79462 * 16 15 14 18 18 C 1.39911 * 120.00023 * 34.79800 * 16 15 14 19 19 N 1.30872 * 119.99594 * 355.58735 * 18 16 15 20 20 Si 1.86794 * 120.00512 * 175.58271 * 18 16 15 21 21 H 1.48508 * 109.46984 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47289 * 120.00002 * 20 18 16 23 23 H 1.48504 * 109.47070 * 240.00352 * 20 18 16 24 24 C 1.40877 * 119.68050 * 359.72213 * 15 14 13 25 25 C 1.36367 * 119.82717 * 359.97438 * 24 15 14 26 26 C 1.36531 * 120.03034 * 359.47036 * 8 7 6 27 27 N 1.35846 * 120.38189 * 0.54674 * 26 8 7 28 28 H 1.08998 * 109.46807 * 269.99939 * 1 2 3 29 29 H 1.09006 * 109.46812 * 29.99590 * 1 2 3 30 30 H 1.09000 * 109.47054 * 149.99077 * 1 2 3 31 31 H 1.07999 * 120.29451 * 0.06825 * 6 5 4 32 32 H 1.07996 * 120.20669 * 179.97438 * 7 6 5 33 33 H 0.96996 * 119.99459 * 355.71482 * 11 9 8 34 34 H 1.07999 * 119.91895 * 0.02562 * 13 12 11 35 35 H 1.08003 * 120.07985 * 180.23884 * 14 13 12 36 36 H 0.96998 * 120.00003 * 179.97438 * 19 18 16 37 37 H 1.07996 * 120.08796 * 179.97438 * 24 15 14 38 38 H 1.08001 * 119.91106 * 180.02562 * 25 24 15 39 39 H 1.08002 * 119.80785 * 180.27549 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2804 1.0539 0.0000 4 7 3.5175 0.7007 0.0005 5 6 3.6013 -0.6185 0.0004 6 6 4.6878 -1.5179 0.0003 7 6 4.4475 -2.8528 -0.0004 8 6 3.1095 -3.3236 -0.0066 9 6 2.8383 -4.7740 -0.0132 10 8 1.6914 -5.1779 -0.0189 11 7 3.8617 -5.6510 -0.0138 12 6 3.6078 -7.0163 0.0701 13 6 4.4861 -7.8438 0.7702 14 6 4.2411 -9.1822 0.8609 15 6 3.1039 -9.7304 0.2359 16 6 2.8471 -11.1157 0.3198 17 1 2.3960 -11.6328 -0.5142 18 6 3.1768 -11.8190 1.4834 19 7 3.8014 -11.2119 2.4601 20 14 2.7255 -13.6246 1.6430 21 1 2.0290 -14.0716 0.4099 22 1 3.9595 -14.4283 1.8340 23 1 1.8286 -13.8092 2.8121 24 6 2.2244 -8.8893 -0.4739 25 6 2.4791 -7.5518 -0.5507 26 6 2.0726 -2.4355 -0.0009 27 7 2.3131 -1.0985 -0.0004 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8901 -0.5138 30 1 -0.3633 -0.8899 -0.5140 31 1 5.7021 -1.1470 0.0015 32 1 5.2697 -3.5529 -0.0009 33 1 4.7751 -5.3302 -0.0727 34 1 5.3599 -7.4227 1.2452 35 1 4.9199 -9.8210 1.4064 36 1 4.0298 -11.6994 3.2670 37 1 1.3508 -9.3026 -0.9559 38 1 1.8055 -6.9057 -1.0941 39 1 1.0552 -2.7980 -0.0011 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338385079.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:43:07 Heat of formation + Delta-G solvation = 81.460806 kcal Electronic energy + Delta-G solvation = -24988.077294 eV Core-core repulsion = 21282.576594 eV Total energy + Delta-G solvation = -3705.500701 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.117 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.76669 -41.53568 -39.52092 -38.58566 -36.31425 -35.58586 -34.73305 -33.07747 -31.88663 -31.46893 -30.67054 -28.52486 -27.33795 -25.64336 -24.73201 -23.47255 -22.83533 -22.59352 -21.56357 -19.56574 -19.19225 -18.84868 -18.22825 -17.90000 -17.52319 -16.96839 -16.26423 -16.24903 -15.95310 -15.65216 -15.20493 -14.89411 -14.58854 -14.41629 -14.17552 -13.97927 -13.64075 -13.58035 -13.52887 -13.24501 -13.20177 -12.88733 -12.79402 -12.76615 -12.49070 -12.21624 -11.80818 -11.75508 -11.38311 -11.26504 -10.98493 -10.77205 -10.67515 -9.45238 -9.25948 -8.73703 -8.50696 -6.32747 -0.75601 -0.25932 0.79084 0.96499 1.16030 1.28756 1.41009 1.48917 1.55421 1.77882 2.13258 2.24667 2.37225 2.81244 2.87108 3.30395 3.33044 3.46101 3.58153 3.62388 3.69967 4.12753 4.30760 4.42576 4.54437 4.57675 4.66301 4.72064 4.81583 4.86749 4.94836 4.98481 5.11323 5.15164 5.18867 5.32984 5.42273 5.60921 5.71212 5.89897 6.00568 6.13781 6.39834 6.58654 6.69615 6.97639 6.98806 7.22360 7.28591 8.41722 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.033831 B = 0.002296 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.444196 B =12192.130004 C =12663.012821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.155 3.845 3 N -0.286 5.286 4 N -0.326 5.326 5 C 0.189 3.811 6 C -0.079 4.079 7 C -0.054 4.054 8 C -0.146 4.146 9 C 0.558 3.442 10 O -0.562 6.562 11 N -0.627 5.627 12 C 0.018 3.982 13 C -0.113 4.113 14 C -0.161 4.161 15 C 0.069 3.931 16 C -0.495 4.495 17 H 0.072 0.928 18 C 0.028 3.972 19 N -0.839 5.839 20 Si 0.986 3.014 21 H -0.261 1.261 22 H -0.264 1.264 23 H -0.270 1.270 24 C -0.222 4.222 25 C -0.092 4.092 26 C 0.142 3.858 27 N -0.400 5.400 28 H 0.104 0.896 29 H 0.111 0.889 30 H 0.099 0.901 31 H 0.193 0.807 32 H 0.187 0.813 33 H 0.420 0.580 34 H 0.129 0.871 35 H 0.118 0.882 36 H 0.285 0.715 37 H 0.096 0.904 38 H 0.113 0.887 39 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.745 15.251 -2.889 15.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.108 4.108 3 N -0.124 5.124 4 N -0.170 5.170 5 C -0.061 4.061 6 C -0.100 4.100 7 C -0.079 4.079 8 C -0.154 4.154 9 C 0.346 3.654 10 O -0.442 6.442 11 N -0.272 5.272 12 C -0.076 4.076 13 C -0.133 4.133 14 C -0.181 4.181 15 C 0.066 3.934 16 C -0.526 4.526 17 H 0.090 0.910 18 C -0.184 4.184 19 N -0.467 5.467 20 Si 0.807 3.193 21 H -0.185 1.185 22 H -0.188 1.188 23 H -0.195 1.195 24 C -0.242 4.242 25 C -0.112 4.112 26 C 0.016 3.984 27 N -0.080 5.080 28 H 0.123 0.877 29 H 0.130 0.870 30 H 0.117 0.883 31 H 0.210 0.790 32 H 0.204 0.796 33 H 0.259 0.741 34 H 0.147 0.853 35 H 0.136 0.864 36 H 0.095 0.905 37 H 0.114 0.886 38 H 0.131 0.869 39 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 0.406 16.644 -2.658 16.860 hybrid contribution -0.276 -1.946 0.222 1.978 sum 0.130 14.698 -2.436 14.899 Atomic orbital electron populations 1.20542 0.79777 1.06435 1.05877 1.25853 0.98616 0.79939 1.06392 1.74111 0.96944 1.24771 1.16621 1.74805 1.11433 1.07389 1.23340 1.23018 0.86114 0.92681 1.04337 1.20532 0.97838 0.90135 1.01497 1.21538 0.95459 0.95960 0.94907 1.19335 0.94628 0.92195 1.09208 1.17980 0.84945 0.85515 0.76964 1.90802 1.22363 1.79963 1.51063 1.42604 1.10059 1.03738 1.70759 1.17207 1.00640 0.82488 1.07225 1.20573 0.99966 0.93685 0.99043 1.21185 0.98293 0.94591 1.04070 1.18060 0.90422 0.93987 0.90909 1.19760 1.37471 0.94077 1.01284 0.90995 1.26701 0.92541 1.04567 0.94577 1.69818 1.31607 1.39201 1.06038 0.85091 0.78906 0.76235 0.79046 1.18465 1.18823 1.19528 1.20936 1.00703 0.93565 1.08966 1.20534 0.97270 0.94423 0.99007 1.21876 1.02785 0.78899 0.94843 1.43798 1.09147 1.06997 1.48059 0.87711 0.87040 0.88267 0.79014 0.79616 0.74077 0.85311 0.86379 0.90477 0.88595 0.86939 0.78712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 10.40 71.24 0.74 -0.01 16 2 C 0.15 3.27 8.14 137.68 1.12 4.39 16 3 N -0.29 -7.84 12.18 -49.62 -0.60 -8.44 16 4 N -0.33 -9.21 12.29 -55.22 -0.68 -9.89 16 5 C 0.19 4.31 7.92 134.12 1.06 5.38 16 6 C -0.08 -1.19 10.09 22.36 0.23 -0.97 16 7 C -0.05 -0.74 9.53 22.56 0.21 -0.52 16 8 C -0.15 -2.91 5.84 -20.33 -0.12 -3.03 16 9 C 0.56 15.54 7.59 86.70 0.66 16.20 16 10 O -0.56 -20.30 13.69 -4.03 -0.06 -20.35 16 11 N -0.63 -17.25 5.25 -305.95 -1.61 -18.85 16 12 C 0.02 0.69 6.30 38.60 0.24 0.93 16 13 C -0.11 -4.57 9.90 22.14 0.22 -4.35 16 14 C -0.16 -7.92 8.61 22.48 0.19 -7.73 16 15 C 0.07 3.60 5.55 -21.28 -0.12 3.49 16 16 C -0.50 -26.26 9.02 23.39 0.21 -26.05 16 17 H 0.07 3.71 7.85 -2.91 -0.02 3.69 16 18 C 0.03 1.40 5.42 85.24 0.46 1.86 16 19 N -0.84 -42.74 10.60 21.82 0.23 -42.51 16 20 Si 0.99 37.98 29.56 68.60 2.03 40.01 16 21 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 22 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 23 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 24 C -0.22 -10.86 9.74 22.48 0.22 -10.64 16 25 C -0.09 -4.07 8.61 22.14 0.19 -3.88 16 26 C 0.14 2.76 10.45 83.67 0.87 3.63 16 27 N -0.40 -8.49 2.94 -341.70 -1.00 -9.50 16 28 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.19 1.70 8.06 -2.91 -0.02 1.68 16 32 H 0.19 1.18 6.45 -2.91 -0.02 1.17 16 33 H 0.42 7.61 6.86 -92.71 -0.64 6.97 16 34 H 0.13 4.22 8.06 -2.91 -0.02 4.19 16 35 H 0.12 6.10 6.13 -2.91 -0.02 6.08 16 36 H 0.28 13.15 8.30 -92.71 -0.77 12.38 16 37 H 0.10 4.54 8.06 -2.91 -0.02 4.52 16 38 H 0.11 4.82 6.22 -2.91 -0.02 4.80 16 39 H 0.20 3.34 7.56 -2.91 -0.02 3.32 16 Total: -1.00 -72.15 338.89 5.20 -66.95 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: 0.49 Total: 23.89 kcal Atomic # 6 Polarization: -27.71 SS G_CDS: 6.40 Total: -21.31 kcal Atomic # 7 Polarization: -85.53 SS G_CDS: -3.66 Total: -89.19 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.06 Total: -20.35 kcal Atomic # 14 Polarization: 37.98 SS G_CDS: 2.03 Total: 40.01 kcal Total: -72.15 5.20 -66.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338385079.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.414 kcal (2) G-P(sol) polarization free energy of solvation -72.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds